development for NIHVIVO-2410 (specific type inference in lieu of moniker)
This commit is contained in:
stellamit
parent
73e0916a04
commit
132cbdce2c
2 changed files with 303 additions and 41 deletions
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@ -2,6 +2,7 @@
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package edu.cornell.mannlib.vitro.webapp.reasoner;
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import java.util.ArrayList;
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import java.util.HashSet;
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import java.util.Iterator;
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import java.util.List;
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@ -35,8 +36,7 @@ import com.hp.hpl.jena.vocabulary.RDFS;
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/**
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* Allows for real-time incremental materialization or retraction of RDFS-
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* style class and property subsumption based ABox inferences as statements
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* are added to or removed from the (ABox or TBox) knowledge base.
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*
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* are added to or removed from the (ABox or TBox) knowledge base.
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*/
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public class SimpleReasoner extends StatementListener {
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@ -101,6 +101,7 @@ public class SimpleReasoner extends StatementListener {
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try {
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if (stmt.getPredicate().equals(RDF.type)) {
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addedABoxTypeAssertion(stmt, inferenceModel);
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setMostSpecificTypes(stmt.getSubject(), inferenceModel);
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} else {
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addedABoxAssertion(stmt,inferenceModel);
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}
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@ -121,6 +122,7 @@ public class SimpleReasoner extends StatementListener {
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try {
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if (stmt.getPredicate().equals(RDF.type)) {
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removedABoxTypeAssertion(stmt, inferenceModel);
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setMostSpecificTypes(stmt.getSubject(), inferenceModel);
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} else {
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removedABoxAssertion(stmt, inferenceModel);
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}
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@ -156,22 +158,22 @@ public class SimpleReasoner extends StatementListener {
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OntClass object = tboxModel.getOntClass(((Resource)stmt.getObject()).getURI());
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if (stmt.getPredicate().equals(RDFS.subClassOf)) {
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addedSubClass(subject,object);
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addedSubClass(subject,object,inferenceModel);
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} else {
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// equivalent class is the same as subclass in both directions
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addedSubClass(subject,object);
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addedSubClass(object,subject);
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addedSubClass(subject,object,inferenceModel);
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addedSubClass(object,subject,inferenceModel);
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}
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} else if (stmt.getPredicate().equals(RDFS.subPropertyOf) || stmt.getPredicate().equals(OWL.equivalentProperty)) {
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OntProperty subject = tboxModel.getOntProperty((stmt.getSubject()).getURI());
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OntProperty object = tboxModel.getOntProperty(((Resource)stmt.getObject()).getURI());
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if (stmt.getPredicate().equals(RDFS.subPropertyOf)) {
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addedSubProperty(subject, object, inferenceModel);
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addedSubProperty(subject,object,inferenceModel);
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} else {
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// equivalent property is the same as subProperty in both directions
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addedSubProperty(subject, object, inferenceModel);
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addedSubProperty(object, subject, inferenceModel);
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addedSubProperty(subject,object,inferenceModel);
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addedSubProperty(object,subject,inferenceModel);
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}
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}
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} catch (Exception e) {
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@ -202,11 +204,11 @@ public class SimpleReasoner extends StatementListener {
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OntClass object = tboxModel.getOntClass(((Resource)stmt.getObject()).getURI());
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if (stmt.getPredicate().equals(RDFS.subClassOf)) {
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removedSubClass(subject,object);
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removedSubClass(subject,object,inferenceModel);
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} else {
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// equivalent class is the same as subclass in both directions
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removedSubClass(subject,object);
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removedSubClass(object,subject);
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removedSubClass(subject,object,inferenceModel);
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removedSubClass(object,subject,inferenceModel);
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}
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} else if (stmt.getPredicate().equals(RDFS.subPropertyOf) || stmt.getPredicate().equals(OWL.equivalentProperty)) {
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OntProperty subject = tboxModel.getOntProperty((stmt.getSubject()).getURI());
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@ -494,11 +496,11 @@ public class SimpleReasoner extends StatementListener {
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* individual that is typed as B, either in the ABox or in the
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* inferred model, assert that it is of type A.
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*/
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public void addedSubClass(OntClass subClass, OntClass superClass) {
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public void addedSubClass(OntClass subClass, OntClass superClass, Model inferenceModel) {
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log.debug("subClass = " + subClass.getURI() + " superClass = " + superClass.getURI());
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aboxModel.enterCriticalSection(Lock.READ);
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aboxModel.enterCriticalSection(Lock.WRITE);
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inferenceModel.enterCriticalSection(Lock.WRITE);
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try {
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@ -517,6 +519,7 @@ public class SimpleReasoner extends StatementListener {
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if (!inferenceModel.contains(infStmt)) {
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inferenceModel.add(infStmt);
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setMostSpecificTypes(infStmt.getSubject(), inferenceModel);
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}
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}
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} finally {
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@ -532,11 +535,11 @@ public class SimpleReasoner extends StatementListener {
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* UNLESS the individual is of some type C that is a subClass
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* of A (including A itself)
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*/
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public void removedSubClass(OntClass subClass, OntClass superClass) {
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public void removedSubClass(OntClass subClass, OntClass superClass, Model inferenceModel) {
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log.debug("subClass = " + subClass.getURI() + ". superClass = " + superClass.getURI());
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aboxModel.enterCriticalSection(Lock.READ);
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aboxModel.enterCriticalSection(Lock.WRITE);
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inferenceModel.enterCriticalSection(Lock.WRITE);
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try {
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@ -559,6 +562,7 @@ public class SimpleReasoner extends StatementListener {
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if (inferenceModel.contains(infStmt)) {
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inferenceModel.remove(infStmt);
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setMostSpecificTypes(infStmt.getSubject(), inferenceModel);
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}
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}
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} finally {
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@ -661,9 +665,9 @@ public class SimpleReasoner extends StatementListener {
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* indicate them for the individual with the core:mostSpecificType
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* annotation.
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*/
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public void setMostSpecificTypes(Resource individual) {
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public void setMostSpecificTypes(Resource individual, Model inferenceModel) {
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aboxModel.enterCriticalSection(Lock.READ);
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aboxModel.enterCriticalSection(Lock.WRITE);
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inferenceModel.enterCriticalSection(Lock.READ);
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tboxModel.enterCriticalSection(Lock.READ);
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@ -672,12 +676,13 @@ public class SimpleReasoner extends StatementListener {
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unionModel.addSubModel(aboxModel);
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unionModel.addSubModel(inferenceModel);
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HashSet<String> typeURIs = new HashSet<String>();
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StmtIterator iter = unionModel.listStatements((Resource) null, RDF.type, (RDFNode) null);
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List<OntClass> types = new ArrayList<OntClass>();
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StmtIterator stmtIter = unionModel.listStatements(individual, RDF.type, (RDFNode) null);
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while (iter.hasNext()) {
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while (stmtIter.hasNext()) {
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Statement stmt = iter.next();
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Statement stmt = stmtIter.next();
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if ( !stmt.getObject().isResource() ) {
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log.warn("The object of this rdf:type assertion is expected to be a resource: " + stmtString(stmt));
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@ -692,21 +697,48 @@ public class SimpleReasoner extends StatementListener {
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}
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if (ontClass.isAnon()) continue;
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if (ontClass.hasSubClass()) continue;
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typeURIs.add(ontClass.getURI());
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Iterator<OntClass> eIter = ontClass.listEquivalentClasses();
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while (eIter.hasNext()) {
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OntClass equivClass = eIter.next();
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if (equivClass.isAnon()) continue;
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typeURIs.add(equivClass.getURI());
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}
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types.add(ontClass);
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}
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HashSet<String> typeURIs = new HashSet<String>();
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List<OntClass> types2 = new ArrayList<OntClass>();
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types2.addAll(types);
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setMostSpecificTypes(individual, typeURIs);
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Iterator<OntClass> typeIter = types.iterator();
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while (typeIter.hasNext()) {
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OntClass type = typeIter.next();
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boolean add = true;
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Iterator<OntClass> typeIter2 = types2.iterator();
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while (typeIter2.hasNext()) {
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OntClass type2 = typeIter2.next();
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if (type.equals(type2)) {
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continue;
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}
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if (type.hasSubClass(type2, false) && !type2.hasSubClass(type, false)) {
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add = false;
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break;
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}
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}
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if (add) {
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typeURIs.add(type.getURI());
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Iterator<OntClass> eIter = type.listEquivalentClasses();
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while (eIter.hasNext()) {
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OntClass equivClass = eIter.next();
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if (equivClass.isAnon()) continue;
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typeURIs.add(equivClass.getURI());
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}
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}
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}
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setMostSpecificTypes(individual, typeURIs, inferenceModel);
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} finally {
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aboxModel.leaveCriticalSection();
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@ -717,27 +749,30 @@ public class SimpleReasoner extends StatementListener {
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return;
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}
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public void setMostSpecificTypes(Resource individual, HashSet<String> typeURIs) {
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public void setMostSpecificTypes(Resource individual, HashSet<String> typeURIs, Model inferenceModel) {
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aboxModel.enterCriticalSection(Lock.WRITE);
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try {
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Model retractions = ModelFactory.createDefaultModel();
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// remove obsolete most-specific-type assertions
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StmtIterator iter = aboxModel.listStatements((Resource) null, mostSpecificType, (RDFNode) null);
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StmtIterator iter = aboxModel.listStatements(individual, mostSpecificType, (RDFNode) null);
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while (iter.hasNext()) {
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Statement stmt = iter.next();
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if ( !stmt.getObject().isLiteral() ) {
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log.warn("The object of this assertion is expected to be a literal: " + stmtString(stmt));
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continue;
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}
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if (!typeURIs.contains(stmt.getObject().asLiteral().getLexicalForm())) {
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aboxModel.remove(stmt);
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retractions.add(stmt);
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}
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}
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aboxModel.remove(retractions);
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// add new most-specific-type assertions
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Iterator<String> typeIter = typeURIs.iterator();
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@ -746,6 +781,7 @@ public class SimpleReasoner extends StatementListener {
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Literal uriLiteral = ResourceFactory.createTypedLiteral(typeURI, XSDDatatype.XSDanyURI);
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if (!aboxModel.contains(individual, mostSpecificType, uriLiteral)) {
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Statement toAdd = ResourceFactory.createStatement(individual, mostSpecificType, uriLiteral);
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aboxModel.add(individual, mostSpecificType, uriLiteral);
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}
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}
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@ -791,7 +827,7 @@ public class SimpleReasoner extends StatementListener {
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// recompute the inferences
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inferenceRebuildModel.enterCriticalSection(Lock.WRITE);
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aboxModel.enterCriticalSection(Lock.READ);
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aboxModel.enterCriticalSection(Lock.WRITE);
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tboxModel.enterCriticalSection(Lock.READ);
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try {
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@ -802,6 +838,7 @@ public class SimpleReasoner extends StatementListener {
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while (iter.hasNext()) {
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Statement stmt = iter.next();
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addedABoxTypeAssertion(stmt, inferenceRebuildModel);
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setMostSpecificTypes(stmt.getSubject(), inferenceRebuildModel);
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}
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log.info("Computing property-based ABox inferences");
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@ -9,15 +9,20 @@ import org.junit.Before;
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import org.junit.Test;
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import org.mindswap.pellet.jena.PelletReasonerFactory;
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import com.hp.hpl.jena.datatypes.xsd.XSDDatatype;
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import com.hp.hpl.jena.ontology.AnnotationProperty;
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import com.hp.hpl.jena.ontology.OntClass;
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import com.hp.hpl.jena.ontology.OntModel;
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import com.hp.hpl.jena.ontology.OntModelSpec;
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import com.hp.hpl.jena.ontology.OntProperty;
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import com.hp.hpl.jena.rdf.model.Model;
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import com.hp.hpl.jena.rdf.model.ModelFactory;
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import com.hp.hpl.jena.rdf.model.RDFNode;
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import com.hp.hpl.jena.rdf.model.Resource;
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import com.hp.hpl.jena.rdf.model.ResourceFactory;
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import com.hp.hpl.jena.rdf.model.Statement;
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import com.hp.hpl.jena.rdf.model.StmtIterator;
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import com.hp.hpl.jena.vocabulary.OWL;
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import com.hp.hpl.jena.vocabulary.RDF;
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import edu.cornell.mannlib.vitro.testing.AbstractTestClass;
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@ -28,6 +33,7 @@ public class SimpleReasonerTest extends AbstractTestClass {
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private Resource objectProperty = ResourceFactory.createResource("http://www.w3.org/2002/07/owl#ObjectProperty");
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private static final String mostSpecificTypePropertyURI = "http://vivoweb.org/ontology/core#mostSpecificType";
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@Before
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public void suppressErrorOutput() {
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@ -35,7 +41,7 @@ public class SimpleReasonerTest extends AbstractTestClass {
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// Turn off log messages to console
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setLoggerLevel(SimpleReasoner.class, Level.OFF);
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}
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/*
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* Test that when an individual is asserted to be of a type,
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* its asserted type is not added to the inference graph
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@ -46,6 +52,7 @@ public class SimpleReasonerTest extends AbstractTestClass {
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// Create a Tbox with a simple class hierarchy. B is a subclass of A.
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// Pellet will compute TBox inferences
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OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
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AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
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OntClass classA = tBox.createClass("http://test.vivo/A");
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classA.setLabel("class A", "en-US");
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@ -84,6 +91,7 @@ public class SimpleReasonerTest extends AbstractTestClass {
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// Create a Tbox with a simple class hierarchy. D and E are subclasses
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// of C. B and C are subclasses of A. Pellet will compute TBox inferences.
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OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
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AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
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OntClass classA = tBox.createClass("http://test.vivo/A");
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classA.setLabel("class A", "en-US");
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@ -137,6 +145,7 @@ public class SimpleReasonerTest extends AbstractTestClass {
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// Pellet will compute TBox inferences
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OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
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AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
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OntModel aBox = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
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Model inf = ModelFactory.createDefaultModel();
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@ -184,6 +193,7 @@ public class SimpleReasonerTest extends AbstractTestClass {
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// Pellet will compute TBox inferences
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OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
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AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
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OntModel aBox = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
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Model inf = ModelFactory.createDefaultModel();
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@ -223,6 +233,7 @@ public class SimpleReasonerTest extends AbstractTestClass {
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// Pellet will compute TBox inferences
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OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
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AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
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OntModel aBox = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
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Model inf = ModelFactory.createDefaultModel();
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@ -271,6 +282,7 @@ public class SimpleReasonerTest extends AbstractTestClass {
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// and B is a subclass of A. Pellet will compute TBox inferences.
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OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
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AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
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OntClass classA = tBox.createClass("http://test.vivo/A");
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classA.setLabel("class A", "en-US");
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@ -336,6 +348,7 @@ public class SimpleReasonerTest extends AbstractTestClass {
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// Pellet will compute TBox inferences
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OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
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AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
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OntModel aBox = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
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Model inf = ModelFactory.createDefaultModel();
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@ -403,6 +416,7 @@ public class SimpleReasonerTest extends AbstractTestClass {
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// Pellet will compute TBox inferences
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OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
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AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
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OntModel aBox = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
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Model inf = ModelFactory.createDefaultModel();
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@ -462,6 +476,7 @@ public class SimpleReasonerTest extends AbstractTestClass {
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// Pellet will compute TBox inferences
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OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
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AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
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OntModel aBox = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
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Model inf = ModelFactory.createDefaultModel();
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@ -547,6 +562,7 @@ public class SimpleReasonerTest extends AbstractTestClass {
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// Pellet will compute TBox inferences
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OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
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AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
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OntModel aBox = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
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Model inf = ModelFactory.createDefaultModel();
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@ -589,6 +605,7 @@ public class SimpleReasonerTest extends AbstractTestClass {
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// Pellet will compute TBox inferences
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OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
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AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
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OntModel aBox = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
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Model inf = ModelFactory.createDefaultModel();
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@ -630,6 +647,7 @@ public class SimpleReasonerTest extends AbstractTestClass {
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// Pellet will compute TBox inferences
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OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
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AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
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OntModel aBox = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
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Model inf = ModelFactory.createDefaultModel();
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@ -684,6 +702,7 @@ public class SimpleReasonerTest extends AbstractTestClass {
|
|||
// Pellet will compute TBox inferences
|
||||
|
||||
OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
|
||||
AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
|
||||
OntModel aBox = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
|
||||
Model inf = ModelFactory.createDefaultModel();
|
||||
|
||||
|
|
@ -726,6 +745,7 @@ public class SimpleReasonerTest extends AbstractTestClass {
|
|||
// Pellet will compute TBox inferences
|
||||
|
||||
OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
|
||||
AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
|
||||
OntModel aBox = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
|
||||
Model inf = ModelFactory.createDefaultModel();
|
||||
|
||||
|
|
@ -782,6 +802,7 @@ public class SimpleReasonerTest extends AbstractTestClass {
|
|||
// Pellet will compute TBox inferences
|
||||
|
||||
OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
|
||||
AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
|
||||
OntModel aBox = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
|
||||
Model inf = ModelFactory.createDefaultModel();
|
||||
|
||||
|
|
@ -849,6 +870,7 @@ public class SimpleReasonerTest extends AbstractTestClass {
|
|||
// Pellet will compute TBox inferences
|
||||
|
||||
OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
|
||||
AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
|
||||
OntModel aBox = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
|
||||
Model inf = ModelFactory.createDefaultModel();
|
||||
|
||||
|
|
@ -933,6 +955,209 @@ public class SimpleReasonerTest extends AbstractTestClass {
|
|||
}
|
||||
|
||||
|
||||
@Test
|
||||
/*
|
||||
* Test computation of mostSpecificType annotations in response
|
||||
* to an added/removed ABox type assertion.
|
||||
*/
|
||||
public void mstTest1(){
|
||||
// Create TBox, ABox and Inference models and register
|
||||
// the ABox reasoner listeners with the ABox and TBox
|
||||
// Pellet will compute TBox inferences
|
||||
|
||||
OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
|
||||
OntModel aBox = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
|
||||
Model inf = ModelFactory.createDefaultModel();
|
||||
|
||||
SimpleReasoner simpleReasoner = new SimpleReasoner(tBox, aBox, inf);
|
||||
aBox.register(simpleReasoner);
|
||||
tBox.register(new SimpleReasonerTBoxListener(simpleReasoner));
|
||||
|
||||
// Set up the Tbox with a class hierarchy. C is a subclass of A
|
||||
// and Y. D and E are subclasses C. B is a subclass of D.
|
||||
// Pellet will compute TBox inferences.
|
||||
|
||||
AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
|
||||
|
||||
OntClass classA = tBox.createClass("http://test.vivo/A");
|
||||
classA.setLabel("class A", "en-US");
|
||||
|
||||
OntClass classB = tBox.createClass("http://test.vivo/B");
|
||||
classB.setLabel("class B", "en-US");
|
||||
|
||||
OntClass classC = tBox.createClass("http://test.vivo/C");
|
||||
classC.setLabel("class C", "en-US");
|
||||
|
||||
OntClass classD = tBox.createClass("http://test.vivo/D");
|
||||
classD.setLabel("class D", "en-US");
|
||||
|
||||
OntClass classE = tBox.createClass("http://test.vivo/E");
|
||||
classE.setLabel("class E", "en-US");
|
||||
|
||||
OntClass classY = tBox.createClass("http://test.vivo/Y");
|
||||
classE.setLabel("class Y", "en-US");
|
||||
|
||||
classY.addSubClass(classC);
|
||||
classA.addSubClass(classC);
|
||||
|
||||
classC.addSubClass(classD);
|
||||
classC.addSubClass(classE);
|
||||
|
||||
classD.addSubClass(classB);
|
||||
|
||||
// Add the statement individual x is of type Y to the ABox
|
||||
Resource ind_x = aBox.createResource("http://test.vivo/x");
|
||||
aBox.add(ind_x, RDF.type, classD);
|
||||
|
||||
// Verify ind_x mostSpecificType annotation for D
|
||||
Assert.assertTrue(aBox.contains(ind_x, mostSpecificType, ResourceFactory.createTypedLiteral(classD.getURI(), XSDDatatype.XSDanyURI)));
|
||||
|
||||
// Verify ind_x doesn't have a mostSpecificType annotation for
|
||||
// A, Y, C, E or B.
|
||||
Assert.assertFalse(aBox.contains(ind_x, mostSpecificType, ResourceFactory.createTypedLiteral(classA.getURI(), XSDDatatype.XSDanyURI)));
|
||||
Assert.assertFalse(aBox.contains(ind_x, mostSpecificType, ResourceFactory.createTypedLiteral(classY.getURI(), XSDDatatype.XSDanyURI)));
|
||||
Assert.assertFalse(aBox.contains(ind_x, mostSpecificType, ResourceFactory.createTypedLiteral(classC.getURI(), XSDDatatype.XSDanyURI)));
|
||||
Assert.assertFalse(aBox.contains(ind_x, mostSpecificType, ResourceFactory.createTypedLiteral(classE.getURI(), XSDDatatype.XSDanyURI)));
|
||||
Assert.assertFalse(aBox.contains(ind_x, mostSpecificType, ResourceFactory.createTypedLiteral(classB.getURI(), XSDDatatype.XSDanyURI)));
|
||||
|
||||
aBox.remove(ind_x, RDF.type, classD); // retract assertion that x is of type D.
|
||||
// Verify that D is not longer the most specific type
|
||||
Assert.assertFalse(aBox.contains(ind_x, mostSpecificType, ResourceFactory.createTypedLiteral(classD.getURI(), XSDDatatype.XSDanyURI)));
|
||||
}
|
||||
|
||||
@Test
|
||||
/*
|
||||
* Test computation of mostSpecificType annotations in response
|
||||
* to an added ABox type assertion.
|
||||
*/
|
||||
public void mstTest2(){
|
||||
// Create TBox, ABox and Inference models and register
|
||||
// the ABox reasoner listeners with the ABox and TBox
|
||||
// Pellet will compute TBox inferences
|
||||
|
||||
OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
|
||||
OntModel aBox = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
|
||||
Model inf = ModelFactory.createDefaultModel();
|
||||
|
||||
SimpleReasoner simpleReasoner = new SimpleReasoner(tBox, aBox, inf);
|
||||
aBox.register(simpleReasoner);
|
||||
tBox.register(new SimpleReasonerTBoxListener(simpleReasoner));
|
||||
|
||||
// Set up the Tbox with a class hierarchy. B is a subclass of A,
|
||||
// C is a subclass of B, and A is a subclass of C.
|
||||
// Pellet should infer these three classes to be equivalent.
|
||||
|
||||
AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
|
||||
|
||||
OntClass classA = tBox.createClass("http://test.vivo/A");
|
||||
classA.setLabel("class A", "en-US");
|
||||
|
||||
OntClass classB = tBox.createClass("http://test.vivo/B");
|
||||
classB.setLabel("class B", "en-US");
|
||||
|
||||
OntClass classC = tBox.createClass("http://test.vivo/C");
|
||||
classC.setLabel("class C", "en-US");
|
||||
|
||||
classA.addSubClass(classB);
|
||||
classB.addSubClass(classC);
|
||||
classC.addSubClass(classA);
|
||||
|
||||
// Add the statement individual x is of type B to the ABox
|
||||
Resource ind_x = aBox.createResource("http://test.vivo/x");
|
||||
aBox.add(ind_x, RDF.type, classB);
|
||||
|
||||
StmtIterator stmtIterator = aBox.listStatements(ind_x, mostSpecificType, (RDFNode)null);
|
||||
|
||||
// Verify ind_x mostSpecificType annotation for A, B and C
|
||||
Assert.assertTrue(aBox.contains(ind_x, mostSpecificType, ResourceFactory.createTypedLiteral(classA.getURI(), XSDDatatype.XSDanyURI)));
|
||||
Assert.assertTrue(aBox.contains(ind_x, mostSpecificType, ResourceFactory.createTypedLiteral(classB.getURI(), XSDDatatype.XSDanyURI)));
|
||||
Assert.assertTrue(aBox.contains(ind_x, mostSpecificType, ResourceFactory.createTypedLiteral(classC.getURI(), XSDDatatype.XSDanyURI)));
|
||||
}
|
||||
|
||||
@Test
|
||||
/*
|
||||
* Test computation of mostSpecificType annotations in response
|
||||
* to an added/removed TBox assertions.
|
||||
*/
|
||||
public void mstTest3(){
|
||||
// Create TBox, ABox and Inference models and register
|
||||
// the ABox reasoner listeners with the ABox and TBox
|
||||
// Pellet will compute TBox inferences
|
||||
|
||||
OntModel tBox = ModelFactory.createOntologyModel(PelletReasonerFactory.THE_SPEC);
|
||||
OntModel aBox = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
|
||||
Model inf = ModelFactory.createDefaultModel();
|
||||
|
||||
SimpleReasoner simpleReasoner = new SimpleReasoner(tBox, aBox, inf);
|
||||
aBox.register(simpleReasoner);
|
||||
tBox.register(new SimpleReasonerTBoxListener(simpleReasoner));
|
||||
|
||||
OntClass OWL_THING = tBox.createClass(OWL.Thing.getURI());
|
||||
AnnotationProperty mostSpecificType = tBox.createAnnotationProperty(mostSpecificTypePropertyURI);
|
||||
|
||||
// Set up the Tbox with classes A, B, C, D,
|
||||
// E, F and G
|
||||
|
||||
OntClass classA = tBox.createClass("http://test.vivo/A");
|
||||
classA.setLabel("class A", "en-US");
|
||||
|
||||
OntClass classB = tBox.createClass("http://test.vivo/B");
|
||||
classB.setLabel("class B", "en-US");
|
||||
|
||||
OntClass classC = tBox.createClass("http://test.vivo/C");
|
||||
classC.setLabel("class C", "en-US");
|
||||
|
||||
OntClass classD = tBox.createClass("http://test.vivo/D");
|
||||
classD.setLabel("class D", "en-US");
|
||||
|
||||
OntClass classE = tBox.createClass("http://test.vivo/E");
|
||||
classE.setLabel("class E", "en-US");
|
||||
|
||||
OntClass classF = tBox.createClass("http://test.vivo/F");
|
||||
classE.setLabel("class F", "en-US");
|
||||
|
||||
OntClass classG = tBox.createClass("http://test.vivo/G");
|
||||
classE.setLabel("class G", "en-US");
|
||||
|
||||
// add individuals x, y and z to the aBox
|
||||
Resource ind_x = aBox.createResource("http://test.vivo/x");
|
||||
Resource ind_y = aBox.createResource("http://test.vivo/y");
|
||||
|
||||
aBox.add(ind_x, RDF.type, OWL_THING);
|
||||
aBox.add(ind_y, RDF.type, classD);
|
||||
|
||||
Assert.assertTrue(aBox.contains(ind_x, mostSpecificType, ResourceFactory.createTypedLiteral(OWL.Thing.getURI(), XSDDatatype.XSDanyURI)));
|
||||
Assert.assertTrue(aBox.contains(ind_y, mostSpecificType, ResourceFactory.createTypedLiteral(classD.getURI(), XSDDatatype.XSDanyURI)));
|
||||
|
||||
aBox.add(ind_x, RDF.type, classC);
|
||||
aBox.add(ind_y, RDF.type, classF);
|
||||
|
||||
Assert.assertFalse(aBox.contains(ind_x, mostSpecificType, ResourceFactory.createTypedLiteral(OWL.Thing.getURI(), XSDDatatype.XSDanyURI)));
|
||||
Assert.assertTrue(aBox.contains(ind_x, mostSpecificType, ResourceFactory.createTypedLiteral(classC.getURI(), XSDDatatype.XSDanyURI)));
|
||||
Assert.assertTrue(aBox.contains(ind_y, mostSpecificType, ResourceFactory.createTypedLiteral(classD.getURI(), XSDDatatype.XSDanyURI)));
|
||||
Assert.assertTrue(aBox.contains(ind_y, mostSpecificType, ResourceFactory.createTypedLiteral(classF.getURI(), XSDDatatype.XSDanyURI)));
|
||||
|
||||
// Set up a class hierarchy.
|
||||
// Pellet will compute TBox inferences.
|
||||
|
||||
classA.addSubClass(classB);
|
||||
classA.addSubClass(classC);
|
||||
classA.addSubClass(classD);
|
||||
|
||||
classC.addSubClass(classE);
|
||||
|
||||
classD.addSubClass(classF);
|
||||
classD.addSubClass(classG);
|
||||
|
||||
Assert.assertFalse(aBox.contains(ind_y, mostSpecificType, ResourceFactory.createTypedLiteral(classD.getURI(), XSDDatatype.XSDanyURI)));
|
||||
Assert.assertTrue(aBox.contains(ind_y, mostSpecificType, ResourceFactory.createTypedLiteral(classF.getURI(), XSDDatatype.XSDanyURI)));
|
||||
|
||||
// If F is removed as a subclass of D, then D should once again be a most specific type
|
||||
// for y.
|
||||
classD.removeSubClass(classF);
|
||||
Assert.assertTrue(aBox.contains(ind_y, mostSpecificType, ResourceFactory.createTypedLiteral(classD.getURI(), XSDDatatype.XSDanyURI)));
|
||||
|
||||
}
|
||||
// To help in debugging the unit test
|
||||
void printModels(OntModel ontModel) {
|
||||
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue