SELECT-based implementation of getIndividualsByVClassURI for SDB
This commit is contained in:
bjl23
parent
e9ca1f9986
commit
30bd6c7d88
3 changed files with 186 additions and 159 deletions
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@ -25,7 +25,7 @@ import edu.cornell.mannlib.vitro.webapp.dao.WebappDaoFactory;
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public class IndividualsListingController extends BaseEditController {
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private static final int MAX_INDIVIDUALS = 50;
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//private static final int MAX_INDIVIDUALS = 50;
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public void doGet(HttpServletRequest request, HttpServletResponse response) {
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VitroRequest vrequest = new VitroRequest(request);
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@ -59,7 +59,8 @@ public class IndividualsListingController extends BaseEditController {
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String vclassURI = request.getParameter("VClassURI");
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VClass vc = vcDao.getVClassByURI(vclassURI);
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List inds = dao.getIndividualsByVClassURI(vclassURI,1,MAX_INDIVIDUALS);
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List inds = dao.getIndividualsByVClassURI(vclassURI);
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//List inds = dao.getIndividualsByVClassURI(vclassURI,1,MAX_INDIVIDUALS);
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ArrayList results = new ArrayList();
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results.add("XX");
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@ -71,6 +71,8 @@ public class IndividualDaoSDB extends IndividualDaoJena {
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return getOntModelSelector().getABoxModel();
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}
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private static final boolean SKIP_INITIALIZATION = true;
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@Override
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public List getIndividualsByVClassURI(String vclassURI, int offset, int quantity ) {
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@ -78,7 +80,7 @@ public class IndividualDaoSDB extends IndividualDaoJena {
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return null;
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}
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List ents = new ArrayList();
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List<Individual> ents = new ArrayList<Individual>();
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Resource theClass = (vclassURI.indexOf(PSEUDO_BNODE_NS) == 0)
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? getOntModel().createResource(new AnonId(vclassURI.split("#")[1]))
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@ -91,54 +93,59 @@ public class IndividualDaoSDB extends IndividualDaoJena {
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ents.addAll(getIndividualsByVClass(vc));
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}
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} else {
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Model model = null;
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DatasetWrapper w = getDatasetWrapper();
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Dataset dataset = w.getDataset();
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dataset.getLock().enterCriticalSection(Lock.READ);
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try {
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DatasetWrapper w = getDatasetWrapper();
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Dataset dataset = w.getDataset();
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dataset.getLock().enterCriticalSection(Lock.READ);
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try {
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String query =
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"CONSTRUCT " +
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"{ ?ind <" + RDFS.label.getURI() + "> ?ooo. \n" +
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"?ind a <" + theClass.getURI() + "> . \n" +
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"?ind <" + VitroVocabulary.MONIKER + "> ?moniker \n" +
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"} WHERE " +
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"{ GRAPH ?g { \n" +
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" ?ind a <" + theClass.getURI() + "> \n" +
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"} \n" +
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"OPTIONAL { GRAPH ?h { ?ind <" + RDFS.label.getURI() + "> ?ooo } }\n" +
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"OPTIONAL { GRAPH ?i { ?ind <" + VitroVocabulary.MONIKER + "> ?moniker } } \n" +
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"}";
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model = QueryExecutionFactory.create(QueryFactory.create(query), dataset).execConstruct();
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} finally {
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dataset.getLock().leaveCriticalSection();
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w.close();
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}
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ResIterator resIt = model.listSubjects();
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try {
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while (resIt.hasNext()) {
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Resource ind = resIt.nextResource();
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if (!ind.isAnon()) {
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//Individual indd = new IndividualImpl(ind.getURI());
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//indd.setLocalName(ind.getLocalName());
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//indd.setName(ind.getLocalName());
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//ents.add(indd);
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ents.add(new IndividualSDB(ind.getURI(), this.dwf, getWebappDaoFactory(), model));
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}
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}
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} finally {
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resIt.close();
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}
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String query =
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"SELECT DISTINCT ?ind ?label ?moniker " +
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"WHERE " +
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"{ GRAPH ?g { \n" +
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" ?ind a <" + theClass.getURI() + "> \n" +
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"} \n" +
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"OPTIONAL { GRAPH ?h { ?ind <" + RDFS.label.getURI() + "> ?label } }\n" +
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"OPTIONAL { GRAPH ?i { ?ind <" + VitroVocabulary.MONIKER + "> ?moniker } } \n" +
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"} ORDER BY ?label";
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ResultSet rs =QueryExecutionFactory.create(
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QueryFactory.create(query), dataset)
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.execSelect();
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Resource res = null;
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while (rs.hasNext()) {
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QuerySolution sol = rs.nextSolution();
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Resource currRes = sol.getResource("ind");
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if ((res == null || !res.equals(currRes))
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&& !currRes.isAnon()) {
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res = currRes;
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Individual ent = new IndividualSDB(currRes.getURI(),
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this.dwf, getWebappDaoFactory(),
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SKIP_INITIALIZATION);
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Literal label = sol.getLiteral("label");
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if (label != null) {
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ent.setName(label.getLexicalForm());
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}
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Literal moniker = sol.getLiteral("moniker");
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if (moniker != null) {
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ent.setMoniker(moniker.getLexicalForm());
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}
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ents.add(ent);
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}
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}
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} finally {
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if (model != null && !model.isClosed()) {
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model.close();
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}
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dataset.getLock().leaveCriticalSection();
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w.close();
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}
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}
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java.util.Collections.sort(ents);
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if (quantity > 0 && offset > 0) {
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List<Individual> sublist = new ArrayList<Individual>();
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for (int i = offset - 1; i < ((offset - 1) + quantity); i++) {
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sublist.add(ents.get(i));
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}
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return sublist;
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}
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return ents;
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}
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@ -97,67 +97,75 @@ public class IndividualSDB extends IndividualImpl implements Individual {
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OntModel ontModel = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM, model);
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this.ind = ontModel.createOntResource(individualURI);
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if (ind != null) {
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if (ind.isAnon()) {
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this.setNamespace(VitroVocabulary.PSEUDO_BNODE_NS);
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this.setLocalName(ind.getId().toString());
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} else {
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this.URI = ind.getURI();
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this.namespace = ind.getNameSpace();
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this.localName = ind.getLocalName();
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}
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} else if (individualURI != null) {
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log.warn("Null individual returned for URI " + individualURI);
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}
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setUpURIParts(ind);
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this.webappDaoFactory = wadf;
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}
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public IndividualSDB(String individualURI, DatasetWrapperFactory datasetWrapperFactory, WebappDaoFactoryJena wadf) {
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public IndividualSDB(String individualURI,
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DatasetWrapperFactory datasetWrapperFactory,
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WebappDaoFactoryJena wadf,
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boolean skipInitialization) {
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this.individualURI = individualURI;
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this.dwf = datasetWrapperFactory;
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DatasetWrapper w = getDatasetWrapper();
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Dataset dataset = w.getDataset();
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try {
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dataset.getLock().enterCriticalSection(Lock.READ);
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String getStatements =
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"CONSTRUCT " +
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"{ <"+individualURI+"> <" + RDFS.label.getURI() + "> ?ooo. \n" +
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"<"+individualURI+"> a ?type . \n" +
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"<"+individualURI+"> <" + VitroVocabulary.MONIKER + "> ?moniker \n" +
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"} WHERE {" +
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"{ GRAPH ?g { \n" +
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"{ <"+individualURI+"> <" + RDFS.label.getURI() + "> ?ooo } \n" +
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"UNION { <"+individualURI+"> <" + VitroVocabulary.MONIKER + "> ?moniker } \n" +
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"} \n" +
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"} UNION { GRAPH <http://vitro.mannlib.cornell.edu/default/vitro-kb-2> { <"+individualURI+"> a ?type } } \n" +
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"}";
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model = QueryExecutionFactory.create(QueryFactory.create(getStatements), dataset).execConstruct();
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} finally {
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dataset.getLock().leaveCriticalSection();
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w.close();
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}
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OntModel ontModel = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM, model);
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this.ind = ontModel.createOntResource(individualURI);
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if (ind != null) {
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if (ind.isAnon()) {
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this.setNamespace(VitroVocabulary.PSEUDO_BNODE_NS);
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this.setLocalName(ind.getId().toString());
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} else {
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this.URI = ind.getURI();
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this.namespace = ind.getNameSpace();
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this.localName = ind.getLocalName();
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}
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} else if (individualURI != null) {
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log.warn("Null individual returned for URI " + individualURI);
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if (skipInitialization) {
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OntModel ontModel = ModelFactory.createOntologyModel(
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OntModelSpec.OWL_MEM);
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this.ind = ontModel.createOntResource(individualURI);
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} else {
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DatasetWrapper w = getDatasetWrapper();
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Dataset dataset = w.getDataset();
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try {
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dataset.getLock().enterCriticalSection(Lock.READ);
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String getStatements =
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"CONSTRUCT " +
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"{ <"+individualURI+"> <" + RDFS.label.getURI() + "> ?ooo. \n" +
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"<"+individualURI+"> a ?type . \n" +
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"<"+individualURI+"> <" + VitroVocabulary.MONIKER + "> ?moniker \n" +
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"} WHERE {" +
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"{ GRAPH ?g { \n" +
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"{ <"+individualURI+"> <" + RDFS.label.getURI() + "> ?ooo } \n" +
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"UNION { <"+individualURI+"> <" + VitroVocabulary.MONIKER + "> ?moniker } \n" +
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"} \n" +
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"} UNION { GRAPH <http://vitro.mannlib.cornell.edu/default/vitro-kb-2> { <"+individualURI+"> a ?type } } \n" +
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"}";
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model = QueryExecutionFactory.create(QueryFactory.create(getStatements), dataset).execConstruct();
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} finally {
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dataset.getLock().leaveCriticalSection();
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w.close();
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}
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OntModel ontModel = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM, model);
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this.ind = ontModel.createOntResource(individualURI);
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}
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setUpURIParts(ind);
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this.webappDaoFactory = wadf;
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}
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private static final boolean SKIP_INITIALIZATION = true;
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public IndividualSDB(String individualURI,
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DatasetWrapperFactory datasetWrapperFactory,
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WebappDaoFactoryJena wadf) {
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this(individualURI, datasetWrapperFactory, wadf, !SKIP_INITIALIZATION);
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}
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private void setUpURIParts(OntResource ind) {
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if (ind != null) {
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if (ind.isAnon()) {
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this.setNamespace(VitroVocabulary.PSEUDO_BNODE_NS);
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this.setLocalName(ind.getId().toString());
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} else {
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this.URI = ind.getURI();
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this.namespace = ind.getNameSpace();
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this.localName = ind.getLocalName();
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}
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} else if (individualURI != null) {
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log.warn("Null individual returned for URI " + individualURI);
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}
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}
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private DatasetWrapper getDatasetWrapper() {
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return this.dwf.getDatasetWrapper();
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}
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@ -1016,36 +1024,45 @@ public class IndividualSDB extends IndividualImpl implements Individual {
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}
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private List<VClass> getMyVClasses(boolean direct) {
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long mstart = System.currentTimeMillis();
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List<VClass> vClassList = new ArrayList<VClass>();
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//this.dataset.getLock().enterCriticalSection(Lock.READ);
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//Model tempModel = ModelFactory.createDefaultModel();
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Model tempModel = ind.getModel();
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//try {
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//String getTypes =
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// "CONSTRUCT{ <" + this.individualURI + "> <" + RDF.type + "> ?types }\n" +
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// "WHERE{ GRAPH " + ((true) ? "<http://vitro.mannlib.cornell.edu/default/vitro-kb-2>" : "?g")
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// + " { <" + this.individualURI +"> <" +RDF.type+ "> ?types \n" +
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// "} } \n";
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//long startTime = System.currentTimeMillis();
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//tempModel = QueryExecutionFactory.create(QueryFactory.create(getTypes), dataset).execConstruct();
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//System.out.println((System.currentTimeMillis() - startTime));
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StmtIterator stmtItr = tempModel.listStatements((Resource) null, RDF.type, (RDFNode) null);
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LinkedList<String> list = new LinkedList<String>();
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while(stmtItr.hasNext()){
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Statement stmt = stmtItr.nextStatement();
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if (stmt.getObject().isResource() && !stmt.getObject().isAnon()) {
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list.add(((Resource) stmt.getObject()).getURI());
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}
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Model tempModel = null;
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if (ind.getModel().size() > 0) {
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tempModel = ind.getModel();
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}
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else {
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String getTypes =
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"CONSTRUCT{ <" + this.individualURI + "> <" + RDF.type + "> ?types }\n" +
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"WHERE{ GRAPH " + ((true) ? "<http://vitro.mannlib.cornell.edu/default/vitro-kb-2>" : "?g")
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+ " { <" + this.individualURI +"> <" +RDF.type+ "> ?types \n" +
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"} } \n";
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DatasetWrapper w = getDatasetWrapper();
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Dataset dataset = w.getDataset();
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dataset.getLock().enterCriticalSection(Lock.READ);
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try {
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tempModel = QueryExecutionFactory.create(
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QueryFactory.create(getTypes), dataset).execConstruct();
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} finally {
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dataset.getLock().leaveCriticalSection();
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w.close();
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}
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Iterator<String> itr = null;
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VClassDao checkSubClass = this.webappDaoFactory.getVClassDao();
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boolean directTypes = false;
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String currentType = null;
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ArrayList<String> done = new ArrayList<String>();
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}
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StmtIterator stmtItr = tempModel.listStatements(
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(Resource) null, RDF.type, (RDFNode) null);
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LinkedList<String> list = new LinkedList<String>();
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while(stmtItr.hasNext()){
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Statement stmt = stmtItr.nextStatement();
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if (stmt.getObject().isResource() && !stmt.getObject().isAnon()) {
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list.add(((Resource) stmt.getObject()).getURI());
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}
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}
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Iterator<String> itr = null;
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VClassDao checkSubClass = this.webappDaoFactory.getVClassDao();
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boolean directTypes = false;
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String currentType = null;
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ArrayList<String> done = new ArrayList<String>();
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/* Loop for comparing starts here */
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if(direct){
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/* Loop for comparing starts here */
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if(direct){
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while(!directTypes){
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itr = list.listIterator();
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@ -1058,48 +1075,50 @@ public class IndividualSDB extends IndividualImpl implements Individual {
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}while(done.contains(currentType));
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if(directTypes)
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break; // check to see if its all over otherwise start comparing
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break;
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// check to see if it's all over otherwise start comparing
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else
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itr = list.listIterator();
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while(itr.hasNext()){
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String nextType = itr.next();
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if(checkSubClass.isSubClassOf(currentType, nextType) && !currentType.equalsIgnoreCase(nextType)){
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//System.out.println(currentType + " is subClassOf " + nextType);
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itr.remove();
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}
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while(itr.hasNext()){
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String nextType = itr.next();
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if(checkSubClass.isSubClassOf(currentType, nextType)
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&& !currentType.equalsIgnoreCase(nextType)){
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itr.remove();
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}
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}
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done.add(currentType); // add the uri to done list.
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}
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}
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done.add(currentType); // add the uri to done list.
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}
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}
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/* Loop for comparing ends here */
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Iterator<String> typeIt = list.iterator();
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try {
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for (Iterator it = typeIt; it.hasNext();) {
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Resource type = ResourceFactory.createResource(it.next().toString());
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String typeURI = (!type.isAnon()) ? type.getURI() : VitroVocabulary.PSEUDO_BNODE_NS + type.getId().toString();
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if (type.getNameSpace() == null || (!webappDaoFactory.getNonuserNamespaces().contains(type.getNameSpace())) ) {
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VClass vc = webappDaoFactory.getVClassDao().getVClassByURI(type.getURI());
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if (vc != null) {
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vClassList.add(vc);
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}
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}
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/* Loop for comparing ends here */
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Iterator<String> typeIt = list.iterator();
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for (Iterator it = typeIt; it.hasNext();) {
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Resource type = ResourceFactory
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.createResource(it.next().toString());
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String typeURI = (!type.isAnon())
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? type.getURI()
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: VitroVocabulary.PSEUDO_BNODE_NS
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+ type.getId().toString();
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if (type.getNameSpace() == null ||
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(!webappDaoFactory.getNonuserNamespaces()
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.contains(type.getNameSpace())) ) {
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VClass vc = webappDaoFactory.getVClassDao()
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.getVClassByURI(type.getURI());
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if (vc != null) {
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vClassList.add(vc);
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}
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} finally {
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//typeIt.close();
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}
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//} finally {
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// tempModel.close();
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// this.dataset.getLock().leaveCriticalSection();
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//}
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}
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try {
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Collections.sort(vClassList);
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} catch (Exception e) {}
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} catch (Exception e) {
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log.error("Unable to sort VClass list", e);
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}
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//System.out.println("Overall: " + (System.currentTimeMillis() - mstart));
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return vClassList;
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}
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