Merge branch 'rel-1.12.0-RC' into main

api/pom.xml

@@ -7,13 +7,13 @@
 
     <groupId>org.vivoweb</groupId>
     <artifactId>vitro-api</artifactId>
-    <version>1.11.2-SNAPSHOT</version>
+    <version>1.12.0-SNAPSHOT</version>
     <packaging>jar</packaging>
 
     <parent>
         <groupId>org.vivoweb</groupId>
         <artifactId>vitro-project</artifactId>
-        <version>1.11.2-SNAPSHOT</version>
+        <version>1.12.0-SNAPSHOT</version>
         <relativePath>..</relativePath>
     </parent>
 
@@ -66,7 +66,7 @@
         <dependency>
             <groupId>org.vivoweb</groupId>
             <artifactId>vitro-dependencies</artifactId>
-            <version>1.11.2-SNAPSHOT</version>
+            <version>1.12.0-SNAPSHOT</version>
             <type>pom</type>
         </dependency>
         <dependency>

api/src/main/java/edu/cornell/mannlib/vitro/webapp/application/ApplicationSetup.java

@@ -24,7 +24,6 @@ import edu.cornell.mannlib.vitro.webapp.utils.jena.criticalsection.LockableModel
  */
 public class ApplicationSetup implements ServletContextListener {
 	private static final String APPLICATION_SETUP_PATH = "config/applicationSetup.n3";
-	private static final String APPLICATION_SETUP_DEFAULT_PATH = "config/default.applicationSetup.n3";
 
 	private ServletContext ctx;
 	private StartupStatus ss;
@@ -46,8 +45,6 @@ public class ApplicationSetup implements ServletContextListener {
 			this.vitroHomeDir = VitroHomeDirectory.find(ctx);
 			ss.info(this, vitroHomeDir.getDiscoveryMessage());
 
-			this.vitroHomeDir.populate();
-
 			locateApplicationConfigFile();
 			loadApplicationConfigFile();
 			createConfigurationBeanLoader();
@@ -66,19 +63,11 @@ public class ApplicationSetup implements ServletContextListener {
 	private void locateApplicationConfigFile() {
 		Path path = this.vitroHomeDir.getPath().resolve(APPLICATION_SETUP_PATH);
 
-		if (!Files.exists(path) || !Files.isReadable(path)) {
-			path = this.vitroHomeDir.getPath().resolve(APPLICATION_SETUP_DEFAULT_PATH);
-		}
-
 		if (!Files.exists(path)) {
-			throw new IllegalStateException("Neither '" + APPLICATION_SETUP_PATH + "' nor '" +
+			throw new IllegalStateException("'" + path + "' does not exist.");
-					APPLICATION_SETUP_DEFAULT_PATH + "' were found in " +
-					this.vitroHomeDir.getPath());
 		}
 		if (!Files.isReadable(path)) {
-			throw new IllegalStateException("No readable '" + APPLICATION_SETUP_PATH + "' nor '" +
+			throw new IllegalStateException("Can't read '" + path + "'");
-					APPLICATION_SETUP_DEFAULT_PATH + "' files were found in " +
-					this.vitroHomeDir.getPath());
 		}
 		this.configFile = path;
 	}

api/src/main/java/edu/cornell/mannlib/vitro/webapp/application/VitroHomeDirectory.java

@@ -4,46 +4,25 @@ package edu.cornell.mannlib.vitro.webapp.application;
 
 import static edu.cornell.mannlib.vitro.webapp.application.BuildProperties.WEBAPP_PATH_BUILD_PROPERTIES;
 
-import java.io.ByteArrayInputStream;
-import java.io.File;
-import java.io.FileOutputStream;
-import java.io.IOException;
-import java.io.InputStream;
-import java.io.OutputStreamWriter;
-import java.nio.charset.StandardCharsets;
 import java.nio.file.Files;
 import java.nio.file.Path;
 import java.nio.file.Paths;
-import java.security.MessageDigest;
-import java.security.NoSuchAlgorithmException;
 import java.util.ArrayList;
-import java.util.HashMap;
 import java.util.List;
 import java.util.Map;
-import java.util.regex.Pattern;
-import java.util.stream.Collectors;
 
+import javax.naming.InitialContext;
 import javax.servlet.ServletContext;
 
-import org.apache.commons.compress.archivers.tar.TarArchiveEntry;
-import org.apache.commons.compress.archivers.tar.TarArchiveInputStream;
-import org.apache.commons.io.FileUtils;
-import org.apache.commons.io.IOUtils;
 import org.apache.commons.logging.Log;
 import org.apache.commons.logging.LogFactory;
 
-import edu.cornell.mannlib.vitro.webapp.config.ContextProperties;
-
 /**
- * Encapsulates some of the info relating to and initializes the Vitro home directory.
+ * Encapsulates some of the info relating to the Vitro home directory.
  */
 public class VitroHomeDirectory {
 	private static final Log log = LogFactory.getLog(VitroHomeDirectory.class);
 
-	private static final String DIGEST_FILE_NAME = "digest.md5";
-
-	private static final Pattern CHECKSUM_PATTERN = Pattern.compile("^[a-f0-9]{32} \\*.+$");
-
 	public static VitroHomeDirectory find(ServletContext ctx) {
 		HomeDirectoryFinder finder = new HomeDirectoryFinder(ctx);
 		return new VitroHomeDirectory(ctx, finder.getPath(),
@@ -73,219 +52,6 @@ public class VitroHomeDirectory {
 		return discoveryMessage;
 	}
 
-	/**
-	 * Populates VIVO home directory with files required to run.
-	 * 
-	 * NOTE: Will not overwrite any modified files on redeploy.
-	 */
-	public void populate() {
-		File vhdDir = getPath().toFile();
-
-		if (!vhdDir.isDirectory() || vhdDir.list() == null) {
-			throw new RuntimeException("Application home dir is not a directory! " + vhdDir);
-		}
-
-		Map<String, String> digest = untar(vhdDir);
-
-		writeDigest(digest);
-	}
-
-	/**
-	 * A non-destructive untar process that returns checksum digest of tarred files.
-	 * 
-	 * Checksum digest can be manually created with the following command.
-	 * 
-	 * `find /vivo/home -type f | cut -c3- | grep -E '^bin/|^config/|^rdf/' | xargs md5sum > /vivo/home/digest.md5`
-	 * 
-	 * @param destination VIVO home directory
-	 * @return digest of each files checksum
-	 */
-	private Map<String, String> untar(File destination) {
-		log.info("Syncing VIVO home at: " + destination.getPath());
-
-		Map<String, String> digest = new HashMap<>();
-		Map<String, String> storedDigest = loadDigest();
-
-		TarArchiveEntry tarEntry;
-		try (
-			InputStream homeDirTar = getHomeDirTar();
-			TarArchiveInputStream tarInput = new TarArchiveInputStream(homeDirTar);
-		) {
-			while ((tarEntry = tarInput.getNextTarEntry()) != null) {
-
-				// Use the example configurations
-				String outFilename = tarEntry.getName().replace("example.", "");
-				File outFile = new File(destination, outFilename);
-
-				// Is the entry a directory?
-				if (tarEntry.isDirectory()) {
-					if (!outFile.exists()) {
-						outFile.mkdirs();
-					}
-				} else {
-					// Entry is a File
-					boolean write = true;
-
-					// reading bytes into memory to avoid having to unreliably reset stream
-					byte[] bytes = IOUtils.toByteArray(tarInput);
-					String newFileChecksum = checksum(bytes);
-					digest.put(outFilename, newFileChecksum);
-
-					// if file already exists and stored digest contains the file,
-					// check to determine if it has changed
-					if (outFile.exists() && storedDigest.containsKey(outFilename)) {
-						String existingFileChecksum = checksum(outFile);
-						// if file has not changed in home and is not the same as new file, overwrite
-						write = storedDigest.get(outFilename).equals(existingFileChecksum)
-							&& !existingFileChecksum.equals(newFileChecksum);
-					}
-
-					if (write) {
-						outFile.getParentFile().mkdirs();
-						try (
-							InputStream is = new ByteArrayInputStream(bytes);
-							FileOutputStream fos = new FileOutputStream(outFile);
-						) {
-							IOUtils.copy(is, fos);
-							log.info(outFile.getAbsolutePath() + " source has changed and has not been "
-							         + "edited in home, updated file has been copied to home directory.");
-						}
-					} else {
-						log.debug(outFile.getAbsolutePath() + " has been preserved.");
-					}
-				}
-			}
-		} catch (IOException | NoSuchAlgorithmException e) {
-			throw new RuntimeException("Error creating home directory!", e);
-		}
-
-		return digest;
-	}
-
-	/**
-	 * Load checksum digest of VIVO home directory.
-	 * 
-	 * @return checksum digest
-	 */
-	private Map<String, String> loadDigest() {
-		File storedDigest = new File(getPath().toFile(), DIGEST_FILE_NAME);
-		if (storedDigest.exists() && storedDigest.isFile()) {
-			log.info("Reading VIVO home digest: " + storedDigest.getPath());
-			try {
-				return FileUtils
-					.readLines(storedDigest, StandardCharsets.UTF_8)
-					.stream()
-					.filter(CHECKSUM_PATTERN.asPredicate())
-					.map(this::split)
-					.collect(Collectors.toMap(this::checksumFile, this::checksumValue));
-			} catch (IOException e) {
-				throw new RuntimeException("Error reading VIVO home checksum digest!", e);
-			}
-		}
-		log.info("VIVO home digest not found: " + storedDigest.getPath());
-
-		return new HashMap<>();
-	}
-
-	/**
-	 * Write VIVO home checksum digest following md5 format; `<checksum> *<file>`.
-	 * 
-	 * @param digest checksum digest to write
-	 */
-	private void writeDigest(Map<String, String> digest) {
-		File storedDigest = new File(getPath().toFile(), DIGEST_FILE_NAME);
-		try (
-			FileOutputStream fos = new FileOutputStream(storedDigest); 
-			OutputStreamWriter osw = new OutputStreamWriter(fos);
-		) {
-			for (Map.Entry<String, String> entry : digest.entrySet()) {
-				String filename = entry.getKey();
-				String checksum = entry.getValue();
-				osw.write(String.format("%s *%s\n", checksum, filename));
-			}
-		} catch (IOException e) {
-			throw new RuntimeException("Error writing home directory checksum digest!", e);
-		}
-		log.info("VIVO home digest created: " + storedDigest.getPath());
-	}
-
-	/**
-	 * Split checksum.
-	 * 
-	 * @param checksum checksum delimited by space and asterisks `<checksum> *<file>`
-	 * @return split checksum
-	 */
-	private String[] split(String checksum) {
-		return checksum.split("\\s+");
-	}
-
-	/**
-	 * Get value from split checksum.
-	 * 
-	 * @param checksum split checksum
-	 * @return checksum value
-	 */
-	private String checksumValue(String[] checksum) {
-		return checksum[0];
-	}
-
-	/**
-	 * Return file from split checksum.
-	 * 
-	 * @param checksum split checksum
-	 * @return filename
-	 */
-	private String checksumFile(String[] checksum) {
-		return checksum[1].substring(1);
-	}
-
-	/**
-	 * Get md5 checksum from file.
-	 * 
-	 * @param file file
-	 * @return md5 checksum as string
-	 * @throws IOException
-	 * @throws NoSuchAlgorithmException
-	 */
-	private String checksum(File file) throws IOException, NoSuchAlgorithmException {
-		return checksum(FileUtils.readFileToByteArray(file));
-	}
-
-	/**
-	 * Get md5 checksum from bytes.
-	 * 
-	 * @param bytes bytes from file
-	 * @return md5 checksum as string
-	 * @throws NoSuchAlgorithmException
-	 */
-	private String checksum(byte[] bytes) throws NoSuchAlgorithmException {
-		MessageDigest md = MessageDigest.getInstance("MD5");
-		md.update(bytes);
-		// bytes to hex
-		StringBuilder result = new StringBuilder();
-		for (byte b : md.digest()) {
-			result.append(String.format("%02x", b));
-		}
-
-		return result.toString();
-	}
-
-	/**
-	 * Get prepacked VIVO home tar file as input stream.
-	 * 
-	 * @return input stream of VIVO home tar file
-	 */
-	private InputStream getHomeDirTar() {
-		String tarLocation = "/WEB-INF/resources/home-files/vivo-home.tar";
-		InputStream tar = ctx.getResourceAsStream(tarLocation);
-		if (tar == null) {
-			log.error("Application home tar not found in: " + tarLocation);
-			throw new RuntimeException("Application home tar not found in: " + tarLocation);
-		}
-
-		return tar;
-	}
-
 	/**
 	 * Find something that specifies the location of the Vitro home directory.
 	 * Look in the JDNI environment, the system properties, and the
@@ -326,13 +92,24 @@ public class VitroHomeDirectory {
 		}
 
 		public void getVhdFromJndi() {
-			String vhdPath = ContextProperties.findJndiProperty(VHD_JNDI_PATH);
+			try {
-			log.debug("'" + VHD_JNDI_PATH + "' as specified by JNDI: " + vhdPath);
+				String vhdPath = (String) new InitialContext()
+						.lookup(VHD_JNDI_PATH);
+				if (vhdPath == null) {
+					log.debug("Didn't find a JNDI value at '" + VHD_JNDI_PATH
+							+ "'.");
+				} else {
+					log.debug("'" + VHD_JNDI_PATH + "' as specified by JNDI: "
+							+ vhdPath);
 					String message = String.format(
 							"JNDI environment '%s' was set to '%s'",
 							VHD_JNDI_PATH, vhdPath);
 					foundLocations.add(new Found(Paths.get(vhdPath), message));
 				}
+			} catch (Exception e) {
+				log.debug("JNDI lookup failed. " + e);
+			}
+		}
 
 		private void getVhdFromSystemProperties() {
 			String vhdPath = System.getProperty(VHD_SYSTEM_PROPERTY);

api/src/main/java/edu/cornell/mannlib/vitro/webapp/beans/UserAccount.java

@@ -7,17 +7,11 @@ import java.util.Collections;
 import java.util.HashSet;
 import java.util.Set;
 
-import edu.cornell.mannlib.vitro.webapp.controller.authenticate.Authenticator;
+import org.apache.commons.lang3.RandomStringUtils;
 
 /**
  * Information about the account of a user. URI, email, password, etc.
  *
- * The "password link expires hash" is just a string that is derived from the
- * value in the passwordLinkExpires field. It doesn't have to be a hash, and
- * there is no need for it to be cryptographic, but it seems embarrassing to
- * just send the value as a clear string. There is no real need for security
- * here, except that a brute force attack would allow someone to change the
- * password on an account that they know has a password change pending.
  */
 public class UserAccount {
 	public static final int MIN_PASSWORD_LENGTH = 6;
@@ -52,6 +46,7 @@ public class UserAccount {
 	private String md5Password = ""; // Never null.
 	private String oldPassword = ""; // Never null.
 	private long passwordLinkExpires = 0L; // Never negative.
+	private String emailKey = "";
 	private boolean passwordChangeRequired = false;
 
 	private int loginCount = 0; // Never negative.
@@ -133,15 +128,27 @@ public class UserAccount {
 		return passwordLinkExpires;
 	}
 
-	public String getPasswordLinkExpiresHash() {
-		return limitStringLength(8, Authenticator.applyArgon2iEncoding(String
-				.valueOf(passwordLinkExpires)));
-	}
-
 	public void setPasswordLinkExpires(long passwordLinkExpires) {
 		this.passwordLinkExpires = Math.max(0, passwordLinkExpires);
 	}
 
+	public void generateEmailKey() {
+		boolean useLetters = true;
+		boolean useNumbers = true;
+		int length = 64;
+		emailKey = RandomStringUtils.random(length, useLetters, useNumbers);
+	}
+	
+	public void setEmailKey(String emailKey) {
+		if (emailKey != null) {
+			this.emailKey = emailKey;	
+		}
+	}
+	
+	public String getEmailKey() {
+		return emailKey;
+	}
+
 	public boolean isPasswordChangeRequired() {
 		return passwordChangeRequired;
 	}
@@ -247,6 +254,7 @@ public class UserAccount {
 				+ (", oldPassword=" + oldPassword)
 				+ (", argon2password=" + argon2Password)
 				+ (", passwordLinkExpires=" + passwordLinkExpires)
+				+ (", emailKey =" + emailKey)
 				+ (", passwordChangeRequired=" + passwordChangeRequired)
 				+ (", externalAuthOnly=" + externalAuthOnly)
 				+ (", loginCount=" + loginCount) + (", status=" + status)

api/src/main/java/edu/cornell/mannlib/vitro/webapp/config/ConfigurationProperties.java

@@ -109,7 +109,7 @@ public abstract class ConfigurationProperties {
 			throw new NullPointerException("bean may not be null.");
 		}
 		context.setAttribute(ATTRIBUTE_NAME, bean);
-		log.info(bean);
+		log.debug(bean);
 	}
 
 	/** Package access, so unit tests can call it. */

api/src/main/java/edu/cornell/mannlib/vitro/webapp/config/ConfigurationPropertiesImpl.java

@@ -32,10 +32,8 @@ public class ConfigurationPropertiesImpl extends ConfigurationProperties {
 
 	public ConfigurationPropertiesImpl(InputStream stream,
 			Map<String, String> preemptiveProperties,
-			Map<String, String> buildProperties,
+			Map<String, String> buildProperties) throws IOException {
-			Map<String, String> contextProperties) throws IOException {
 		Map<String, String> map = new HashMap<>(buildProperties);
-		map.putAll(contextProperties);
 
 		Properties props = loadFromPropertiesFile(stream);
 		for (String key: props.stringPropertyNames()) {

api/src/main/java/edu/cornell/mannlib/vitro/webapp/config/ConfigurationPropertiesSetup.java

@@ -49,12 +49,12 @@ public class ConfigurationPropertiesSetup implements ServletContextListener {
 	/** Name of the file that contains runtime properties. */
 	private static final String FILE_RUNTIME_PROPERTIES = "runtime.properties";
 
-	/** Fall-back name of the file that contains runtime properties. */
-	private static final String FILE_DEFAULT_RUNTIME_PROPERTIES = "default.runtime.properties";
-
 	/** Configuration property to store the Vitro home directory */
 	private static final String VHD_CONFIGURATION_PROPERTY = "vitro.home";
 
+	/** Configuration property used to determine if there are runtime.properties files in multiple locations **/
+	static final String RP_MULTIPLE = "rp.multiple";
+
 	@Override
 	public void contextInitialized(ServletContextEvent sce) {
 		ServletContext ctx = sce.getServletContext();
@@ -69,17 +69,18 @@ public class ConfigurationPropertiesSetup implements ServletContextListener {
 				File vitroHomeDirConfig = new File(vitroHomeDir.getPath()
 						.concat(File.separator).concat("config"));
 
+				String rpfLocation = findMultipleRuntimePropertiesFiles(
+						vitroHomeDir, vitroHomeDirConfig);
+
 				File runtimePropertiesFile = locateRuntimePropertiesFile(
-						vitroHomeDirConfig, ss);
+					vitroHomeDir, vitroHomeDirConfig, ss);
 				stream = new FileInputStream(runtimePropertiesFile);
 
 				Map<String, String> preempts = createPreemptiveProperties(
-						VHD_CONFIGURATION_PROPERTY, vitroHomeDir);
+						VHD_CONFIGURATION_PROPERTY, vitroHomeDir, RP_MULTIPLE, rpfLocation);
 
 				ConfigurationPropertiesImpl bean = new ConfigurationPropertiesImpl(
-						stream, preempts,
+						stream, preempts, new BuildProperties(ctx).getMap());
-						new BuildProperties(ctx).getMap(),
-						new ContextProperties().getMap());
 
 				ConfigurationProperties.setBean(ctx, bean);
 				ss.info(this, "Loaded " + bean.getPropertyMap().size()
@@ -98,36 +99,53 @@ public class ConfigurationPropertiesSetup implements ServletContextListener {
 		}
 	}
 
-	private File locateRuntimePropertiesFile(File vitroHomeDirConfig, StartupStatus ss) {
+	private String findMultipleRuntimePropertiesFiles(File vitroHomeDir,
+			File vitroHomeDirConfig) {
 
-		// First look for the user-customized runtime.properties
+		File rpf = new File(vitroHomeDir, FILE_RUNTIME_PROPERTIES);
-		File rpf = new File(vitroHomeDirConfig, FILE_RUNTIME_PROPERTIES);
+		File rpfc = new File(vitroHomeDirConfig, FILE_RUNTIME_PROPERTIES);
 
-		// Have we found a suitable runtime.properties file?
+		if (rpf.exists() && !rpfc.exists()) {
-		if (!rpf.exists() || !rpf.isFile() || !rpf.canRead()) {
+			return "home";
-
+		} else if (rpf.exists() && rpfc.exists()) {
-			// If not... look for the default runtime.properties
+			return "both";
-			rpf = new File(vitroHomeDirConfig, FILE_DEFAULT_RUNTIME_PROPERTIES);
+		} else if (rpfc.exists()) {
+			return "config";
+		} else {
+			throw new IllegalStateException("Did not find '"
+					+ FILE_RUNTIME_PROPERTIES + "' in vitro home directory '"
+					+ vitroHomeDir + "' or config directory '" + vitroHomeDirConfig + "'");
+		}
 	}
 
-		if (!rpf.exists() || !rpf.isFile()) {
+	private File locateRuntimePropertiesFile(File vitroHomeDir,
-			throw new IllegalStateException("Neither '" + FILE_RUNTIME_PROPERTIES + "' nor '" +
+			File vitroHomeDirConfig, StartupStatus ss) {
-					FILE_DEFAULT_RUNTIME_PROPERTIES + "' were found in " +
+
-					vitroHomeDirConfig.getAbsolutePath());
+		File rpf = new File(vitroHomeDir, FILE_RUNTIME_PROPERTIES);
+		File rpfc = new File(vitroHomeDirConfig, FILE_RUNTIME_PROPERTIES);
+
+		if (!rpf.exists()) {
+			rpf = rpfc;
+		}
+
+		if (!rpf.isFile()) {
+			throw new IllegalStateException("'" + rpf.getPath()
+					+ "' is not a file.");
 		}
 		if (!rpf.canRead()) {
-			throw new IllegalStateException("No readable '" + FILE_RUNTIME_PROPERTIES + "' nor '" +
+			throw new IllegalStateException("Cannot read '" + rpf.getPath()
-					FILE_DEFAULT_RUNTIME_PROPERTIES + "' files were found in " +
+					+ "'.");
-					vitroHomeDirConfig.getAbsolutePath());
 		}
 		ss.info(this, "Loading runtime properties from '" + rpf.getPath() + "'");
 		return rpf;
 	}
 
 	private Map<String, String> createPreemptiveProperties(
-			String propertyVitroHome, File vitroHomeDir) {
+			String propertyVitroHome, File vitroHomeDir, String propertyRpfMultiple,
+			String rpfLocation) {
 		Map<String, String> map = new HashMap<String, String>();
 		map.put(propertyVitroHome, vitroHomeDir.getAbsolutePath());
+		map.put(propertyRpfMultiple, rpfLocation);
 		return map;
 	}
 

api/src/main/java/edu/cornell/mannlib/vitro/webapp/config/ConfigurationPropertiesSmokeTests.java

@@ -48,6 +48,7 @@ public class ConfigurationPropertiesSmokeTests implements
 		StartupStatus ss = StartupStatus.getBean(ctx);
 
 		checkDefaultNamespace(ctx, props, ss);
+		checkMultipleRPFs(ctx, props, ss);
 		checkLanguages(ctx, props, ss);
 		checkEncryptionParameters(props, ss);
 
@@ -85,6 +86,32 @@ public class ConfigurationPropertiesSmokeTests implements
 		}
 	}
 
+	/**
+	 * Warn if runtime.properties exists in multiple locations
+	 * or is located vivo.home instead of vivo.home/config
+	 */
+	private void checkMultipleRPFs(ServletContext ctx,
+			ConfigurationProperties props, StartupStatus ss) {
+		String rpfStatus = props.getProperty(ConfigurationPropertiesSetup.RP_MULTIPLE);
+
+		if (rpfStatus.equals("both")) {
+			ss.warning(this,
+					"Deprecation warning: Files matching the name 'runtime.properties' "
+							+ "were found in both vivo.home and vivo.home/config. Using "
+							+ "the file in vivo.home. Future releases may require "
+							+ "runtime.properties be placed in vivo.home/config.");
+		}
+
+		if (rpfStatus.equals("home")) {
+			ss.warning(this,
+					"Deprecation warning: runtime.properties was found in the "
+							+ "vivo.home directory. The recommended directory for "
+							+ "runtime.properties is now vivo.home/config. Future releases "
+							+ "may require runtime.properties be placed in "
+							+ "vivo.home/config.");
+		}
+	}
+
 	/**
 	 * Warn if we set up the languages incorrectly:
 	 *

api/src/main/java/edu/cornell/mannlib/vitro/webapp/config/ContextProperties.java

@@ -1,76 +0,0 @@
-/* $This file is distributed under the terms of the license in LICENSE$ */
-
-package edu.cornell.mannlib.vitro.webapp.config;
-
-import java.util.Collections;
-import java.util.HashMap;
-import java.util.Map;
-
-import javax.naming.InitialContext;
-import javax.naming.NamingException;
-
-import org.apache.commons.logging.Log;
-import org.apache.commons.logging.LogFactory;
-
-/**
- * Obtains and provides the properties from the web application's context.xml
- *
- * @author awoods
- * @since 2020-10-23
- */
-public class ContextProperties {
-	private static final Log log = LogFactory.getLog(ContextProperties.class);
-
-	private static final String DEFAULT_NAMESPACE_JNDI_PATH = "java:comp/env/vitro/defaultNamespace";
-	private static final String ROOT_USER_ADDRESS_JNDI_PATH = "java:comp/env/vitro/rootUserAddress";
-	private static final String APP_NAME_JNDI_PATH = "java:comp/env/vitro/appName";
-
-	private static final String DEFAULT_NAMESPACE_KEY = "Vitro.defaultNamespace";
-	private static final String ROOT_USER_ADDRESS_KEY = "rootUser.emailAddress";
-	private static final String APP_NAME_KEY = "app-name";
-
-	private final Map<String, String> propertyMap;
-
-	public ContextProperties() {
-		Map<String, String> map = new HashMap<>();
-
-		// Find default namespace
-		map.put(DEFAULT_NAMESPACE_KEY, findJndiProperty(DEFAULT_NAMESPACE_JNDI_PATH));
-
-		// Find root user email address
-		map.put(ROOT_USER_ADDRESS_KEY, findJndiProperty(ROOT_USER_ADDRESS_JNDI_PATH));
-
-		// Find application name
-		map.put(APP_NAME_KEY, findJndiProperty(APP_NAME_JNDI_PATH));
-
-		propertyMap = Collections.unmodifiableMap(map);
-	}
-
-	public static String findJndiProperty(String jndiProperty) {
-		try {
-			return  (String) new InitialContext().lookup(jndiProperty);
-
-		} catch (NamingException e) {
-			log.error("Unable to find name in JNDI: " + jndiProperty, e);
-
-			StringBuilder msg = new StringBuilder("\n====================\n");
-			msg.append("Error loading JNDI property: ");
-			msg.append(jndiProperty);
-			msg.append("\n");
-			msg.append("\tAn application context XML file (named after deployed war file, e.g. vivo.xml) ");
-			msg.append("must be placed in servlet container.\n");
-			msg.append("\tFor Tomcat, see documentation for location of file: \n");
-			msg.append("\t\thttps://tomcat.apache.org/tomcat-9.0-doc/config/context.html#Defining_a_context \n");
-			msg.append("\tThe common location on the server is: $CATALINA_BASE/conf/[enginename]/[hostname]/ \n");
-			msg.append("\t\te.g. /var/lib/tomcat9/conf/Catalina/localhost/vivo.xml\n");
-			msg.append("\tAn example 'context.xml' file is in the META-INF directory of this project.\n");
-			msg.append("====================\n");
-			throw new RuntimeException(msg.toString(), e);
-		}
-	}
-
-	public Map<String, String> getMap() {
-		return this.propertyMap;
-	}
-
-}

api/src/main/java/edu/cornell/mannlib/vitro/webapp/controller/accounts/UserAccountsSelector.java

@@ -249,6 +249,7 @@ public class UserAccountsSelector {
 			user.setMd5Password(ifLiteralPresent(solution, "md5pwd", ""));
 			user.setArgon2Password(ifLiteralPresent(solution, "a2pwd", ""));
 			user.setPasswordLinkExpires(ifLongPresent(solution, "expire", 0L));
+			user.setEmailKey(ifLiteralPresent(solution, "emailKey", ""));
 			user.setLoginCount(ifIntPresent(solution, "count", 0));
 			user.setLastLoginTime(ifLongPresent(solution, "lastLogin", 0));
 			user.setStatus(parseStatus(solution, "status", null));

api/src/main/java/edu/cornell/mannlib/vitro/webapp/controller/accounts/admin/UserAccountsAddPage.java

@@ -156,6 +156,7 @@ public class UserAccountsAddPage extends UserAccountsPage {
 		u.setOldPassword("");
 		u.setPasswordChangeRequired(false);
 		u.setPasswordLinkExpires(0);
+		u.setEmailKey("");
 		u.setLoginCount(0);
 		u.setLastLoginTime(0L);
 		u.setStatus(Status.INACTIVE);

api/src/main/java/edu/cornell/mannlib/vitro/webapp/controller/accounts/admin/UserAccountsAddPageStrategy.java

@@ -84,6 +84,7 @@ public abstract class UserAccountsAddPageStrategy extends UserAccountsPage {
 				u.setStatus(Status.ACTIVE);
 			} else {
 				u.setPasswordLinkExpires(figureExpirationDate().getTime());
+				u.generateEmailKey();
 				u.setStatus(Status.INACTIVE);
 			}
 		}
@@ -119,10 +120,8 @@ public abstract class UserAccountsAddPageStrategy extends UserAccountsPage {
 		private String buildCreatePasswordLink() {
 			try {
 				String email = page.getAddedAccount().getEmailAddress();
-				String hash = page.getAddedAccount()
+				String key = page.getAddedAccount().getEmailKey();
-						.getPasswordLinkExpiresHash();
+				String relativeUrl = UrlBuilder.getUrl(CREATE_PASSWORD_URL,	"user", email, "key", key);
-				String relativeUrl = UrlBuilder.getUrl(CREATE_PASSWORD_URL,
-						"user", email, "key", hash);
 
 				URL context = new URL(vreq.getRequestURL().toString());
 				URL url = new URL(context, relativeUrl);

api/src/main/java/edu/cornell/mannlib/vitro/webapp/controller/accounts/admin/UserAccountsEditPage.java

@@ -274,6 +274,7 @@ public class UserAccountsEditPage extends UserAccountsPage {
 			userAccount.setOldPassword("");
 			userAccount.setPasswordChangeRequired(false);
 			userAccount.setPasswordLinkExpires(0L);
+			userAccount.setEmailKey("");
 		}
 
 		if (isRootUser()) {

api/src/main/java/edu/cornell/mannlib/vitro/webapp/controller/accounts/admin/UserAccountsEditPageStrategy.java

@@ -82,6 +82,7 @@ public abstract class UserAccountsEditPageStrategy extends UserAccountsPage {
 		protected void setAdditionalProperties(UserAccount u) {
 			if (resetPassword && !page.isExternalAuthOnly()) {
 				u.setPasswordLinkExpires(figureExpirationDate().getTime());
+				u.generateEmailKey();
 			}
 		}
 
@@ -121,10 +122,8 @@ public abstract class UserAccountsEditPageStrategy extends UserAccountsPage {
 		private String buildResetPasswordLink() {
 			try {
 				String email = page.getUpdatedAccount().getEmailAddress();
-				String hash = page.getUpdatedAccount()
+				String key = page.getUpdatedAccount().getEmailKey();
-						.getPasswordLinkExpiresHash();
+				String relativeUrl = UrlBuilder.getUrl(RESET_PASSWORD_URL, "user", email, "key", key);
-				String relativeUrl = UrlBuilder.getUrl(RESET_PASSWORD_URL,
-						"user", email, "key", hash);
 
 				URL context = new URL(vreq.getRequestURL().toString());
 				URL url = new URL(context, relativeUrl);

api/src/main/java/edu/cornell/mannlib/vitro/webapp/controller/accounts/user/UserAccountsCreatePasswordPage.java

@@ -36,6 +36,7 @@ public class UserAccountsCreatePasswordPage extends
 		userAccount.setArgon2Password(Authenticator.applyArgon2iEncoding(newPassword));
 		userAccount.setMd5Password("");
 		userAccount.setPasswordLinkExpires(0L);
+		userAccount.setEmailKey("");
 		userAccount.setPasswordChangeRequired(false);
 		userAccount.setStatus(Status.ACTIVE);
 		userAccountsDao.updateUserAccount(userAccount);
@@ -54,6 +55,11 @@ public class UserAccountsCreatePasswordPage extends
 		return i18n.text("account_already_activated", userEmail);
 	}
 	
+	@Override
+	protected String passwordChangeInavlidKeyMessage() {
+		return i18n.text("password_change_invalid_key", userEmail);
+	}
+
 	@Override
 	protected String templateName() {
 		return TEMPLATE_NAME;

api/src/main/java/edu/cornell/mannlib/vitro/webapp/controller/accounts/user/UserAccountsFirstTimeExternalPage.java

@@ -195,6 +195,7 @@ public class UserAccountsFirstTimeExternalPage extends UserAccountsPage {
 		u.setExternalAuthId(externalAuthId);
 		u.setPasswordChangeRequired(false);
 		u.setPasswordLinkExpires(0);
+		u.setEmailKey("");
 		u.setExternalAuthOnly(true);
 		u.setLoginCount(0);
 		u.setStatus(Status.ACTIVE);

api/src/main/java/edu/cornell/mannlib/vitro/webapp/controller/accounts/user/UserAccountsMyAccountPageStrategy.java

@@ -159,6 +159,7 @@ public abstract class UserAccountsMyAccountPageStrategy extends
 				userAccount.setMd5Password("");
 				userAccount.setPasswordChangeRequired(false);
 				userAccount.setPasswordLinkExpires(0L);
+				userAccount.setEmailKey("");
 			}
 		}
 

api/src/main/java/edu/cornell/mannlib/vitro/webapp/controller/accounts/user/UserAccountsPasswordBasePage.java

@@ -103,12 +103,12 @@ public abstract class UserAccountsPasswordBasePage extends UserAccountsPage {
 			return;
 		}
 
-		String expectedKey = userAccount.getPasswordLinkExpiresHash();
+		String expectedKey = userAccount.getEmailKey();
-		if (!key.equals(expectedKey)) {
+		if (key.isEmpty() || !key.equals(expectedKey)) {
 			log.warn("Password request for '" + userEmail + "' is bogus: key ("
 					+ key + ") doesn't match expected key (" + expectedKey
 					+ ")");
-			bogusMessage = passwordChangeNotPendingMessage();
+			bogusMessage = passwordChangeInavlidKeyMessage();
 			return;
 		}
 
@@ -153,7 +153,7 @@ public abstract class UserAccountsPasswordBasePage extends UserAccountsPage {
 		body.put("minimumLength", UserAccount.MIN_PASSWORD_LENGTH);
 		body.put("maximumLength", UserAccount.MAX_PASSWORD_LENGTH);
 		body.put("userAccount", userAccount);
-		body.put("key", userAccount.getPasswordLinkExpiresHash());
+		body.put("key", userAccount.getEmailKey());
 		body.put("newPassword", newPassword);
 		body.put("confirmPassword", confirmPassword);
 		body.put("formUrls", buildUrlsMap());
@@ -177,5 +177,7 @@ public abstract class UserAccountsPasswordBasePage extends UserAccountsPage {
 
 	protected abstract String passwordChangeNotPendingMessage();
 	
+	protected abstract String passwordChangeInavlidKeyMessage();
+
 	protected abstract String templateName();
 }

api/src/main/java/edu/cornell/mannlib/vitro/webapp/controller/accounts/user/UserAccountsResetPasswordPage.java

@@ -56,6 +56,11 @@ public class UserAccountsResetPasswordPage extends UserAccountsPasswordBasePage
 		return i18n.text("password_change_not_pending", userEmail);
 	}
 	
+	@Override
+	protected String passwordChangeInavlidKeyMessage() {
+		return i18n.text("password_change_invalid_key", userEmail);
+	}
+
 	@Override
 	protected String templateName() {
 		return TEMPLATE_NAME;

api/src/main/java/edu/cornell/mannlib/vitro/webapp/controller/authenticate/BasicAuthenticator.java

@@ -134,6 +134,7 @@ public class BasicAuthenticator extends Authenticator {
 		userAccount.setMd5Password("");
 		userAccount.setPasswordChangeRequired(false);
 		userAccount.setPasswordLinkExpires(0L);
+		userAccount.setEmailKey("");
 		getUserAccountsDao().updateUserAccount(userAccount);
 	}
 

api/src/main/java/edu/cornell/mannlib/vitro/webapp/controller/authenticate/LoginRedirector.java

@@ -108,7 +108,9 @@ public class LoginRedirector {
 			throws IOException {
 		try {
 			DisplayMessage.setMessage(request, assembleWelcomeMessage());
-			response.sendRedirect(getRedirectionUriForLoggedInUser());
+			String redirectUrl = getRedirectionUriForLoggedInUser();
+			log.debug("Sending redirect to path: " + redirectUrl);
+			response.sendRedirect(redirectUrl);
 		} catch (IOException e) {
 			log.debug("Problem with re-direction", e);
 			response.sendRedirect(getApplicationHomePageUrl());
@@ -175,21 +177,13 @@ public class LoginRedirector {
 		}
 	}
 
-	/**
-	 * The application home page can be overridden by an attribute in the
-	 * ServletContext. Further, it can either be an absolute URL, or it can be
-	 * relative to the application. Weird.
-	 */
 	private String getApplicationHomePageUrl() {
-		String contextRedirect = (String) session.getServletContext()
+		String contextPath = request.getContextPath();
-				.getAttribute("postLoginRequest");
+		if (contextPath.equals("")) {
-		if (contextRedirect != null) {
+			return "/";
-			if (contextRedirect.indexOf(":") == -1) {
+		}
-				return request.getContextPath() + contextRedirect;
+		else {
-			} else {
+			return contextPath;
-				return contextRedirect;
 		}
 	}
-		return request.getContextPath();
-	}
 }

api/src/main/java/edu/cornell/mannlib/vitro/webapp/controller/freemarker/ViewLabelsServlet.java

@@ -11,28 +11,29 @@ import java.util.HashSet;
 import java.util.List;
 import java.util.Locale;
 import java.util.Map;
+import java.util.Set;
 
 import javax.servlet.ServletException;
 import javax.servlet.annotation.WebServlet;
 import javax.servlet.http.HttpServletRequest;
 import javax.servlet.http.HttpServletResponse;
 
+import org.apache.commons.lang3.LocaleUtils;
 import org.apache.commons.lang3.StringUtils;
 import org.apache.commons.logging.Log;
 import org.apache.commons.logging.LogFactory;
-
 import org.apache.jena.query.QuerySolution;
 import org.apache.jena.query.ResultSet;
 import org.apache.jena.rdf.model.Literal;
 
 import edu.cornell.mannlib.vitro.webapp.beans.Individual;
 import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
-import edu.cornell.mannlib.vitro.webapp.controller.freemarker.FreemarkerHttpServlet;
 import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ExceptionResponseValues;
 import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
 import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
 import edu.cornell.mannlib.vitro.webapp.dao.jena.QueryUtils;
 import edu.cornell.mannlib.vitro.webapp.i18n.selection.SelectedLocale;
+import edu.cornell.mannlib.vitro.webapp.rdfservice.filter.LanguageFilteringUtils;
 
 
 /*Servlet to view all labels in various languages for individual*/
@@ -47,12 +48,13 @@ public class ViewLabelsServlet extends FreemarkerHttpServlet{
 		String subjectUri = vreq.getParameter("subjectUri");
 		body.put("subjectUri", subjectUri);
 		try {
-			//Get all language codes/labels in the system, and this list is sorted by language name
-	        List<HashMap<String, String>> locales = this.getLocales(vreq);
-	        //Get code to label hashmap - we use this to get the language name for the language code returned in the rdf literal
-	        HashMap<String, String> localeCodeToNameMap = this.getFullCodeToLanguageNameMap(locales);
 	        //the labels already added by the user
             ArrayList<Literal> existingLabels = this.getExistingLabels(subjectUri, vreq);
+			//Get all language codes/labels used in the list of existing labels
+	        List<HashMap<String, String>> locales = this.getLocales(vreq, existingLabels);
+	        //Get code to label hashmap - we use this to get the language name for the language code returned in the rdf literal
+	        HashMap<String, String> localeCodeToNameMap = this.getFullCodeToLanguageNameMap(locales);
+
 			//existing labels keyed by language name and each of the list of labels is sorted by language name
 			HashMap<String, List<LabelInformation>> existingLabelsByLanguageName = this.getLabelsSortedByLanguageName(existingLabels, localeCodeToNameMap, vreq, subjectUri);
 			//Get available locales for the drop down for adding a new label, also sorted by language name
@@ -137,20 +139,26 @@ public class ViewLabelsServlet extends FreemarkerHttpServlet{
 		doGet(request, response);
 	}
 
-    //get locales
+    //get locales present in list of literals
-    public List<HashMap<String, String>> getLocales(VitroRequest vreq) {
+    public List<HashMap<String, String>> getLocales(VitroRequest vreq, 
-    	List<Locale> selectables = SelectedLocale.getSelectableLocales(vreq);
+            List<Literal> existingLiterals) {
-		if (selectables.isEmpty()) {
+        Set<Locale> locales = new HashSet<Locale>();
+        for(Literal literal : existingLiterals) {
+            String language = literal.getLanguage();
+            if(!StringUtils.isEmpty(language)) {
+                locales.add(LanguageFilteringUtils.languageToLocale(language));
+            }
+        }
+		if (locales.isEmpty()) {
 			return Collections.emptyList();
 		}
 		List<HashMap<String, String>> list = new ArrayList<HashMap<String, String>>();
 		Locale currentLocale = SelectedLocale.getCurrentLocale(vreq);
-		for (Locale locale : selectables) {
+		for (Locale locale : locales) {
 			try {
 				list.add(buildLocaleMap(locale, currentLocale));
 			} catch (FileNotFoundException e) {
-				log.warn("Can't show the Locale selector for '" + locale
+				log.warn("Can't show locale '" + locale + "': " + e);
-						+ "': " + e);
 			}
 		}
 
@@ -188,8 +196,8 @@ public class ViewLabelsServlet extends FreemarkerHttpServlet{
 
         ArrayList<Literal>  labels = new ArrayList<Literal>();
         try {
-        	//We want to get the labels for all the languages, not just the display language
+        	// Show only labels with current language filtering
-            ResultSet results = QueryUtils.getLanguageNeutralQueryResults(queryStr, vreq);
+            ResultSet results = QueryUtils.getQueryResults(queryStr, vreq);
             while (results.hasNext()) {
                 QuerySolution soln = results.nextSolution();
                 Literal nodeLiteral = soln.get("label").asLiteral();

api/src/main/java/edu/cornell/mannlib/vitro/webapp/controller/individual/IndividualResponseBuilder.java

@@ -6,14 +6,13 @@ import java.io.IOException;
 import java.sql.SQLException;
 import java.util.ArrayList;
 import java.util.HashMap;
+import java.util.HashSet;
 import java.util.List;
 import java.util.Map;
+import java.util.Set;
 
-import org.apache.jena.rdf.model.RDFNode;
-import edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual.IndividualTemplateModelBuilder;
 import org.apache.commons.logging.Log;
 import org.apache.commons.logging.LogFactory;
-
 import org.apache.jena.query.QuerySolution;
 import org.apache.jena.query.ResultSet;
 
@@ -36,6 +35,7 @@ import edu.cornell.mannlib.vitro.webapp.i18n.selection.SelectedLocale;
 import edu.cornell.mannlib.vitro.webapp.utils.dataGetter.ExecuteDataRetrieval;
 import edu.cornell.mannlib.vitro.webapp.web.beanswrappers.ReadOnlyBeansWrapper;
 import edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual.IndividualTemplateModel;
+import edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual.IndividualTemplateModelBuilder;
 import edu.ucsf.vitro.opensocial.OpenSocialManager;
 import freemarker.ext.beans.BeansWrapper;
 import freemarker.template.TemplateModel;
@@ -123,8 +123,10 @@ class IndividualResponseBuilder {
 		 * into the data model: no real data can be modified.
 		 */
 		// body.put("individual", wrap(itm, BeansWrapper.EXPOSE_SAFE));
-	    body.put("labelCount", getLabelCount(itm.getUri(), vreq));
+		LabelAndLanguageCount labelAndLanguageCount = getLabelAndLanguageCount(
-	    body.put("languageCount", getLanguagesRepresentedCount(itm.getUri(), vreq));
+		        itm.getUri(), vreq);
+	    body.put("labelCount", labelAndLanguageCount.getLabelCount());
+	    body.put("languageCount", labelAndLanguageCount.getLanguageCount());
 	    //We also need to know the number of available locales
 	    body.put("localesCount", SelectedLocale.getSelectableLocales(vreq).size());
 	    body.put("profileType", getProfileType(itm.getUri(), vreq));
@@ -282,61 +284,103 @@ class IndividualResponseBuilder {
     	return map;
     }
 
-    private static String LABEL_COUNT_QUERY = ""
+    private static String LABEL_QUERY = ""
             + "PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> \n"
-        + "SELECT ( str(COUNT(?label)) AS ?labelCount ) WHERE { \n"
+            + "SELECT ?label WHERE { \n"
             + "    ?subject rdfs:label ?label \n"
             + "    FILTER isLiteral(?label) \n"
             + "}" ;
     
-    private static String DISTINCT_LANGUAGE_QUERY = ""
+//    Queries that were previously used for counts via RDFService that didn't
-            + "PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> \n"
+//        filter results by language.  With language filtering, aggregate 
-            + "SELECT ( str(COUNT(DISTINCT lang(?label))) AS ?languageCount ) WHERE { \n"
+//        functions like COUNT() cannot be used.
-            + "    ?subject rdfs:label ?label \n"
-            + "    FILTER isLiteral(?label) \n"
-            + "}" ;
     
-    private static Integer getLabelCount(String subjectUri, VitroRequest vreq) {
+//    private static String LABEL_COUNT_QUERY = ""
-        String queryStr = QueryUtils.subUriForQueryVar(LABEL_COUNT_QUERY, "subject", subjectUri);
+//        + "PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> \n"
+//        + "SELECT ( str(COUNT(?label)) AS ?labelCount ) WHERE { \n"
+//        + "    ?subject rdfs:label ?label \n"
+//        + "    FILTER isLiteral(?label) \n"
+//        + "}" ;
+
+//    private static String DISTINCT_LANGUAGE_QUERY = ""
+//            + "PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> \n"
+//            + "SELECT ( str(COUNT(DISTINCT lang(?label))) AS ?languageCount ) WHERE { \n"
+//            + "    ?subject rdfs:label ?label \n"
+//            + "    FILTER isLiteral(?label) \n"
+//            + "}" ;
+
+    private static LabelAndLanguageCount getLabelAndLanguageCount(
+            String subjectUri, VitroRequest vreq) {
+        // 1.12.0 Now filtering to only the labels for the current locale so as
+        // to be consistent with other editing forms.  Because the language
+        // filter can only act on a result set containing actual literals,
+        // we can't do the counting with a COUNT() in the query itself.  So
+        // we will now use the LABEL_QUERY instead of LABEL_COUNT_QUERY and 
+        // count the rows and the number of distinct languages represented.
+        Set<String> distinctLanguages = new HashSet<String>();
+        String queryStr = QueryUtils.subUriForQueryVar(LABEL_QUERY, "subject", subjectUri);
         log.debug("queryStr = " + queryStr);
-        int theCount = 0;
+        int labelCount = 0;
         try {   
-            //ResultSet results = QueryUtils.getQueryResults(queryStr, vreq);
+            ResultSet results = QueryUtils.getQueryResults(queryStr, vreq);
-            //Get query results across all languages in order for template to show manage labels link correctly
+            while(results.hasNext()) {
-            ResultSet results = QueryUtils.getLanguageNeutralQueryResults(queryStr, vreq);
+                QuerySolution qsoln = results.next();
-            if (results.hasNext()) {
+                labelCount++;
-                QuerySolution soln = results.nextSolution();
+                String lang = qsoln.getLiteral("label").getLanguage();
-                RDFNode labelCount = soln.get("labelCount");
+                if(lang == null) {
-                if (labelCount != null && labelCount.isLiteral()) {
+                    lang = "";
-                    theCount = labelCount.asLiteral().getInt();
                 }
+                distinctLanguages.add(lang);
             }
         } catch (Exception e) {
             log.error(e, e);
         }
-        return theCount;
+        return new LabelAndLanguageCount(labelCount, distinctLanguages.size());
+    }
+    
+    private static class LabelAndLanguageCount {
+        
+        private Integer labelCount;
+        private Integer languageCount;
+        
+        public LabelAndLanguageCount(Integer labelCount, Integer languageCount) {
+            this.labelCount = labelCount;
+            this.languageCount = languageCount;
+        }
+        
+        public Integer getLabelCount() {
+            return this.labelCount;
+        }
+        
+        public Integer getLanguageCount() {
+            return this.languageCount;
+        }
+        
     }
 
     //what is the number of languages represented across the labels
-    private static Integer getLanguagesRepresentedCount(String subjectUri, VitroRequest vreq) {
+    // This version not compatible with language-filtering RDF services
-    	   String queryStr = QueryUtils.subUriForQueryVar(DISTINCT_LANGUAGE_QUERY, "subject", subjectUri);
+//    private static Integer getLanguagesRepresentedCount(String subjectUri, VitroRequest vreq) {
-           log.debug("queryStr = " + queryStr);
+//    	   String queryStr = QueryUtils.subUriForQueryVar(DISTINCT_LANGUAGE_QUERY, "subject", subjectUri);
-           int theCount = 0;
+//           log.debug("queryStr = " + queryStr);
-           try {
+//           int theCount = 0;
-
+//           try {
-               ResultSet results = QueryUtils.getLanguageNeutralQueryResults(queryStr, vreq);
+//
-               if (results.hasNext()) {
+//               ResultSet results = QueryUtils.getLanguageNeutralQueryResults(queryStr, vreq);
-                   QuerySolution soln = results.nextSolution();
+//               if (results.hasNext()) {
-                   RDFNode languageCount = soln.get("languageCount");
+//                   QuerySolution soln = results.nextSolution();
-                   if (languageCount != null && languageCount.isLiteral()) {
+//                   RDFNode languageCount = soln.get("languageCount");
-                       theCount = languageCount.asLiteral().getInt();
+//                   if (languageCount != null && languageCount.isLiteral()) {
-                   }
+//                       theCount = languageCount.asLiteral().getInt();
-               }
+//                       log.info("Language count is " + theCount);
-           } catch (Exception e) {
+//                   }
-               log.error(e, e);
+//               }
-           }
+//           } catch (Exception e) {
-           return theCount;
+//               log.error(e, e);
-    }
+//           }
+//           log.info("Returning language count " + theCount);
+//           return theCount;
+//    }
 
     private static String PROFILE_TYPE_QUERY = ""
         + "PREFIX display: <http://vitro.mannlib.cornell.edu/ontologies/display/1.1#> \n"

api/src/main/java/edu/cornell/mannlib/vitro/webapp/dao/VitroVocabulary.java

@@ -155,6 +155,7 @@ public class VitroVocabulary {
     public static final String USERACCOUNT_LAST_LOGIN_TIME = VITRO_AUTH + "lastLoginTime";
     public static final String USERACCOUNT_STATUS = VITRO_AUTH + "status";
     public static final String USERACCOUNT_PASSWORD_LINK_EXPIRES = VITRO_AUTH + "passwordLinkExpires";
+    public static final String USERACCOUNT_EMAIL_KEY = VITRO_AUTH + "emailKey";
     public static final String USERACCOUNT_PASSWORD_CHANGE_REQUIRED = VITRO_AUTH + "passwordChangeRequired";
     public static final String USERACCOUNT_EXTERNAL_AUTH_ID = VITRO_AUTH + "externalAuthId";
     public static final String USERACCOUNT_EXTERNAL_AUTH_ONLY = VITRO_AUTH + "externalAuthOnly";

api/src/main/java/edu/cornell/mannlib/vitro/webapp/dao/jena/JenaBaseDaoCon.java

@@ -121,6 +121,7 @@ public class JenaBaseDaoCon {
     protected  DatatypeProperty   USERACCOUNT_LAST_LOGIN_TIME = _constModel.createDatatypeProperty(VitroVocabulary.USERACCOUNT_LAST_LOGIN_TIME);
     protected  DatatypeProperty   USERACCOUNT_STATUS = _constModel.createDatatypeProperty(VitroVocabulary.USERACCOUNT_STATUS);
     protected  DatatypeProperty   USERACCOUNT_PASSWORD_LINK_EXPIRES = _constModel.createDatatypeProperty(VitroVocabulary.USERACCOUNT_PASSWORD_LINK_EXPIRES);
+    protected  DatatypeProperty   USERACCOUNT_EMAIL_KEY = _constModel.createDatatypeProperty(VitroVocabulary.USERACCOUNT_EMAIL_KEY);
     protected  DatatypeProperty   USERACCOUNT_PASSWORD_CHANGE_REQUIRED = _constModel.createDatatypeProperty(VitroVocabulary.USERACCOUNT_PASSWORD_CHANGE_REQUIRED);
     protected  DatatypeProperty   USERACCOUNT_EXTERNAL_AUTH_ID = _constModel.createDatatypeProperty(VitroVocabulary.USERACCOUNT_EXTERNAL_AUTH_ID);
     protected  DatatypeProperty   USERACCOUNT_EXTERNAL_AUTH_ONLY = _constModel.createDatatypeProperty(VitroVocabulary.USERACCOUNT_EXTERNAL_AUTH_ONLY);

api/src/main/java/edu/cornell/mannlib/vitro/webapp/dao/jena/RDFServiceGraph.java

@@ -12,10 +12,10 @@ import java.util.function.Supplier;
 import org.apache.commons.lang3.StringUtils;
 import org.apache.commons.logging.Log;
 import org.apache.commons.logging.LogFactory;
-
 import org.apache.jena.graph.Capabilities;
 import org.apache.jena.graph.Graph;
 import org.apache.jena.graph.GraphEventManager;
+import org.apache.jena.graph.GraphListener;
 import org.apache.jena.graph.GraphStatisticsHandler;
 import org.apache.jena.graph.Node;
 import org.apache.jena.graph.TransactionHandler;
@@ -23,7 +23,6 @@ import org.apache.jena.graph.Triple;
 import org.apache.jena.graph.impl.GraphWithPerform;
 import org.apache.jena.graph.impl.SimpleEventManager;
 import org.apache.jena.query.QuerySolution;
-import org.apache.jena.rdf.listeners.StatementListener;
 import org.apache.jena.rdf.model.Model;
 import org.apache.jena.rdf.model.ModelFactory;
 import org.apache.jena.rdf.model.StmtIterator;
@@ -409,7 +408,18 @@ public class RDFServiceGraph implements GraphWithPerform {
     @Override
     public GraphEventManager getEventManager() {
         if (eventManager == null) {
-            eventManager = new SimpleEventManager(this);
+            eventManager = new SimpleEventManager() {                
+                @Override
+                public void notifyEvent(Graph g, Object event) {
+                    ChangeSet changeSet = rdfService.manufactureChangeSet();
+                    changeSet.addPreChangeEvent(event);
+                    try {
+                        rdfService.changeSetUpdate(changeSet);
+                    } catch (RDFServiceException e) {
+                        throw new RuntimeException(e);
+                    }   
+                }                
+            };
         }
         return eventManager;
     }
@@ -595,21 +605,7 @@ public class RDFServiceGraph implements GraphWithPerform {
     }
 
     public static Model createRDFServiceModel(final RDFServiceGraph g) {
-        Model m = VitroModelFactory.createModelForGraph(g);
+        return VitroModelFactory.createModelForGraph(g);
-        m.register(new StatementListener() {
-            @Override
-            public void notifyEvent(Model m, Object event) {
-                ChangeSet changeSet = g.getRDFService().manufactureChangeSet();
-                changeSet.addPreChangeEvent(event);
-                try {
-                    g.getRDFService().changeSetUpdate(changeSet);
-                } catch (RDFServiceException e) {
-                    throw new RuntimeException(e);
-                }
-            }
-
-        });
-        return m;
     }
 
 	@Override

api/src/main/java/edu/cornell/mannlib/vitro/webapp/dao/jena/UserAccountsDaoJena.java

@@ -4,7 +4,6 @@ package edu.cornell.mannlib.vitro.webapp.dao.jena;
 
 import java.util.ArrayList;
 import java.util.Collection;
-import java.util.Collections;
 import java.util.Comparator;
 import java.util.List;
 import java.util.Random;
@@ -98,6 +97,8 @@ public class UserAccountsDaoJena extends JenaBaseDao implements UserAccountsDao
 			u.setOldPassword(getPropertyStringValue(r, USERACCOUNT_OLD_PASSWORD));
 			u.setPasswordLinkExpires(getPropertyLongValue(r,
 					USERACCOUNT_PASSWORD_LINK_EXPIRES));
+			u.setEmailKey(getPropertyStringValue(r,USERACCOUNT_EMAIL_KEY));
+			
 			u.setPasswordChangeRequired(getPropertyBooleanValue(r,
 					USERACCOUNT_PASSWORD_CHANGE_REQUIRED));
 			u.setExternalAuthOnly(getPropertyBooleanValue(r,
@@ -240,6 +241,8 @@ public class UserAccountsDaoJena extends JenaBaseDao implements UserAccountsDao
 					userAccount.getLoginCount(), model);
 			addPropertyLongValue(res, USERACCOUNT_LAST_LOGIN_TIME,
 					userAccount.getLastLoginTime(), model);
+			addPropertyStringValue(res, USERACCOUNT_EMAIL_KEY,
+					userAccount.getEmailKey(), model);
 			if (userAccount.getStatus() != null) {
 				addPropertyStringValue(res, USERACCOUNT_STATUS, userAccount
 						.getStatus().toString(), model);
@@ -306,6 +309,8 @@ public class UserAccountsDaoJena extends JenaBaseDao implements UserAccountsDao
 					userAccount.getLoginCount(), model);
 			updatePropertyLongValue(res, USERACCOUNT_LAST_LOGIN_TIME,
 					userAccount.getLastLoginTime(), model);
+			updatePropertyStringValue(res, USERACCOUNT_EMAIL_KEY,
+					userAccount.getEmailKey(), model);
 			if (userAccount.getStatus() == null) {
 				updatePropertyStringValue(res, USERACCOUNT_STATUS, null, model);
 			} else {

api/src/main/java/edu/cornell/mannlib/vitro/webapp/edit/n3editing/configuration/generators/BaseEditConfigurationGenerator.java

@@ -16,6 +16,7 @@ import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.EditConfigurationVTw
 import edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.IdModelSelector;
 import edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.StandardModelSelector;
 import edu.cornell.mannlib.vitro.webapp.modelaccess.ModelAccess;
+import edu.cornell.mannlib.vitro.webapp.modelaccess.ModelAccess.LanguageOption;
 
 public abstract class BaseEditConfigurationGenerator implements EditConfigurationGenerator {
 
@@ -63,6 +64,7 @@ public abstract class BaseEditConfigurationGenerator implements EditConfiguratio
         setupModelSelectorsFromVitroRequest(vreq, editConfig);
 
         OntModel queryModel = ModelAccess.on(vreq).getOntModel();
+        OntModel languageNeutralModel = vreq.getLanguageNeutralUnionFullModel();
 
         if( editConfig.getSubjectUri() == null)
             editConfig.setSubjectUri( EditConfigurationUtils.getSubjectUri(vreq));
@@ -78,7 +80,10 @@ public abstract class BaseEditConfigurationGenerator implements EditConfiguratio
             editConfig.prepareForObjPropUpdate(queryModel);
         } else if( dataKey != null ) { // edit of a data prop statement
             //do nothing since the data prop form generator must take care of it
-            editConfig.prepareForDataPropUpdate(queryModel, vreq.getWebappDaoFactory().getDataPropertyDao());
+            // Use language-neutral model to ensure that a data property statement
+            // is found for any literal hash, even if the UI locale is changed.
+            editConfig.prepareForDataPropUpdate(languageNeutralModel,
+                    vreq.getWebappDaoFactory().getDataPropertyDao());
         } else{
             //this might be a create new or a form
             editConfig.prepareForNonUpdate(queryModel);

api/src/main/java/edu/cornell/mannlib/vitro/webapp/edit/n3editing/configuration/generators/ManageLabelsForIndividualGenerator.java

@@ -15,6 +15,7 @@ import java.util.HashSet;
 import java.util.List;
 import java.util.Locale;
 import java.util.Map;
+import java.util.Set;
 
 import javax.servlet.http.HttpSession;
 
@@ -41,6 +42,7 @@ import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.fields.FieldVTwo;
 import edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.FoafNameToRdfsLabelPreprocessor;
 import edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.ManageLabelsForIndividualPreprocessor;
 import edu.cornell.mannlib.vitro.webapp.i18n.selection.SelectedLocale;
+import edu.cornell.mannlib.vitro.webapp.rdfservice.filter.LanguageFilteringUtils;
 import edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual.DataPropertyStatementTemplateModel;
 
 /**
@@ -202,12 +204,12 @@ public class ManageLabelsForIndividualGenerator extends BaseEditConfigurationGen
 
 	private void addFormSpecificData(EditConfigurationVTwo config,
 			VitroRequest vreq) {
-		//Get all language codes/labels in the system, and this list is sorted by language name
-        List<HashMap<String, String>> locales = this.getLocales(vreq);
-        //Get code to label hashmap - we use this to get the language name for the language code returned in the rdf literal
-        HashMap<String, String> localeCodeToNameMap = this.getFullCodeToLanguageNameMap(locales);
 	    //the labels already added by the user
         ArrayList<Literal> existingLabels = this.getExistingLabels(config.getSubjectUri(), vreq);
+		//Get language codes/labels for languages present in the existing labels
+        List<HashMap<String, String>> locales = this.getLocales(vreq, existingLabels);
+        //Get code to label hashmap - we use this to get the language name for the language code returned in the rdf literal
+        HashMap<String, String> localeCodeToNameMap = this.getFullCodeToLanguageNameMap(locales);		
 		int numberExistingLabels = existingLabels.size();
 		//existing labels keyed by language name and each of the list of labels is sorted by language name
 		HashMap<String, List<LabelInformation>> existingLabelsByLanguageName = this.getLabelsSortedByLanguageName(existingLabels, localeCodeToNameMap, config, vreq);
@@ -373,8 +375,9 @@ public class ManageLabelsForIndividualGenerator extends BaseEditConfigurationGen
 
         ArrayList<Literal>  labels = new ArrayList<Literal>();
         try {
-        	//We want to get the labels for all the languages, not just the display language
+        	// Get results filtered to current locale so as to be consistent
-            ResultSet results = QueryUtils.getLanguageNeutralQueryResults(queryStr, vreq);
+            // with other editing forms.
+            ResultSet results = QueryUtils.getQueryResults(queryStr, vreq);
             while (results.hasNext()) {
                 QuerySolution soln = results.nextSolution();
                 Literal nodeLiteral = soln.get("label").asLiteral();
@@ -401,30 +404,32 @@ public class ManageLabelsForIndividualGenerator extends BaseEditConfigurationGen
     	return template;
     }
 
-
+    //get locales present in list of literals
-
+    public List<HashMap<String, String>> getLocales(VitroRequest vreq, 
-    //get locales
+            List<Literal> existingLiterals) {
-    public List<HashMap<String, String>> getLocales(VitroRequest vreq) {
+        Set<Locale> locales = new HashSet<Locale>();
-    	List<Locale> selectables = SelectedLocale.getSelectableLocales(vreq);
+        for(Literal literal : existingLiterals) {
-		if (selectables.isEmpty()) {
+            String language = literal.getLanguage();
+            if(!StringUtils.isEmpty(language)) {
+                locales.add(LanguageFilteringUtils.languageToLocale(language));
+            }
+        }
+        if (locales.isEmpty()) {
             return Collections.emptyList();
         }
         List<HashMap<String, String>> list = new ArrayList<HashMap<String, String>>();
         Locale currentLocale = SelectedLocale.getCurrentLocale(vreq);
-		for (Locale locale : selectables) {
+        for (Locale locale : locales) {
             try {
                 list.add(buildLocaleMap(locale, currentLocale));
             } catch (FileNotFoundException e) {
-				log.warn("Can't show the Locale selector for '" + locale
+                log.warn("Can't show locale '" + locale + "': " + e);
-						+ "': " + e);
             }
         }
 
         return list;
     }
 
-
-
     public HashMap<String, String> getFullCodeToLanguageNameMap(List<HashMap<String, String>> localesList) {
     	HashMap<String, String> codeToLanguageMap = new HashMap<String, String>();
     	for(Map<String, String> locale: localesList) {

api/src/main/java/edu/cornell/mannlib/vitro/webapp/edit/n3editing/controller/EditRequestDispatchController.java

@@ -68,12 +68,15 @@ public class EditRequestDispatchController extends FreemarkerHttpServlet {
     //TODO: Create this generator
     final String RDFS_LABEL_FORM = "edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.RDFSLabelGenerator";
     final String DEFAULT_DELETE_FORM = "edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.DefaultDeleteGenerator";
+    final String MANAGE_MENUS_FORM = "edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.generators.ManagePageGenerator";
     
 	@Override
 	protected AuthorizationRequest requiredActions(VitroRequest vreq) {
 		// If request is for new individual, return simple do back end editing action permission
 		if (StringUtils.isNotEmpty(EditConfigurationUtils.getTypeOfNew(vreq))) {
 			return SimplePermission.DO_BACK_END_EDITING.ACTION;
+		} else if(MANAGE_MENUS_FORM.equals(vreq.getParameter("editForm"))) {
+		    return SimplePermission.MANAGE_MENUS.ACTION;
 		}
 		// Check if this statement can be edited here and return unauthorized if not
 		String subjectUri = EditConfigurationUtils.getSubjectUri(vreq);

api/src/main/java/edu/cornell/mannlib/vitro/webapp/modelaccess/impl/RequestModelAccessImpl.java

@@ -202,7 +202,7 @@ public class RequestModelAccessImpl implements RequestModelAccess {
 
 	@Override
 	public OntModel getOntModel(String name, LanguageOption... options) {
-		return addLanguageAwareness(getOntModel(new OntModelKey(name, options)));
+		return getOntModel(new OntModelKey(name, options));
 	}
 
 	private OntModel getOntModel(OntModelKey key) {

api/src/main/java/edu/cornell/mannlib/vitro/webapp/rdfservice/filter/FilteredResultSet.java

@@ -9,6 +9,7 @@ import org.apache.jena.query.QuerySolution;
 import org.apache.jena.query.ResultSet;
 import org.apache.jena.rdf.model.Model;
 import org.apache.jena.sparql.engine.binding.Binding;
+import org.apache.jena.sparql.engine.binding.BindingUtils;
 
 public class FilteredResultSet implements ResultSet {
 
@@ -53,7 +54,7 @@ public class FilteredResultSet implements ResultSet {
 
     @Override
     public Binding nextBinding() {
-        throw new UnsupportedOperationException("Can we ignore this?");
+        return BindingUtils.asBinding(nextSolution());
     }
 
     @Override

api/src/main/java/edu/cornell/mannlib/vitro/webapp/rdfservice/filter/LangSort.java

@@ -36,8 +36,14 @@ public class LangSort {
     }
     
     protected int compareLangs(String t1lang, String t2lang) {
+        int index1 = languageIndex(t1lang);
+        int index2 = languageIndex(t2lang);
+        if(index1 == index2) {
+            return t1lang.compareTo(t2lang);
+        } else {
             return languageIndex(t1lang) - languageIndex(t2lang);
         }
+    }
 
     /**
      * Return index of exact match, or index of partial match, or

api/src/main/java/edu/cornell/mannlib/vitro/webapp/rdfservice/impl/jena/RDFServiceJena.java

@@ -201,8 +201,8 @@ public abstract class RDFServiceJena extends RDFServiceImpl implements RDFServic
         log.debug("blank node model size " + blankNodeModel.size());
 
         if (blankNodeModel.size() == 1) {
-            log.warn("Deleting single triple with blank node: " + blankNodeModel);
+            log.debug("Deleting single triple with blank node: " + blankNodeModel);
-            log.warn("This likely indicates a problem; excessive data may be deleted.");
+            log.debug("This could result in the deletion of multiple triples if multiple blank nodes match the same triple pattern.");
         }
 
         Query rootFinderQuery = QueryFactory.create(BNODE_ROOT_QUERY);

api/src/main/java/edu/cornell/mannlib/vitro/webapp/rdfservice/impl/jena/tdb/RDFServiceTDB.java

@@ -13,6 +13,8 @@ import java.nio.file.Paths;
 import java.util.List;
 
 import org.apache.jena.rdf.model.Model;
+import org.apache.jena.rdf.model.RDFNode;
+
 import edu.cornell.mannlib.vitro.webapp.rdfservice.ResultSetConsumer;
 import org.apache.commons.io.IOUtils;
 import org.apache.commons.logging.Log;
@@ -75,9 +77,17 @@ public class RDFServiceTDB extends RDFServiceJena {
 			notifyListenersOfPreChangeEvents(changeSet);
 
 			dataset.begin(ReadWrite.WRITE);          
+            try {
+                boolean committed = false;
                 try {                   
                     applyChangeSetToModel(changeSet, dataset);
                     dataset.commit();
+                    committed = true;
+                } finally {
+                    if(!committed) {
+                        dataset.abort();
+                    }
+                }
             } finally {                
 				dataset.end();
 			}
@@ -93,6 +103,10 @@ public class RDFServiceTDB extends RDFServiceJena {
 		}
 	}
 
+        @Override
+        public boolean preferPreciseOptionals() {
+            return true;
+        }
 
 	@Override
 	public void close() {
@@ -232,6 +246,28 @@ public class RDFServiceTDB extends RDFServiceJena {
 		return isEquivalentGraph(graphURI, inStream, ModelSerializationFormat.NTRIPLE);
 	}
 
+	@Override
+    public long countTriples(RDFNode subject, RDFNode predicate, RDFNode object)
+            throws RDFServiceException {
+	    dataset.begin(ReadWrite.READ);
+        try {
+            return super.countTriples(subject, predicate, object);
+        } finally {
+            dataset.end();
+        }
+	}
+	
+	@Override
+    public Model getTriples(RDFNode subject, RDFNode predicate, RDFNode object, 
+            long limit, long offset) throws RDFServiceException {
+	    dataset.begin(ReadWrite.READ);
+	    try {
+	        return super.getTriples(subject, predicate, object, limit, offset);
+	    } finally {
+	        dataset.end();
+	    }	    
+	}
+	
 	/**
 	 * Convert all of the references to integer compatible type to "integer" in the serialized graph.
 	 *

api/src/main/java/edu/cornell/mannlib/vitro/webapp/utils/developer/DeveloperSettings.java

@@ -202,23 +202,18 @@ public class DeveloperSettings {
 			File dsFile = homeDir.resolve("config/developer.properties")
 					.toFile();
 
-			if (!dsFile.exists()) {
-				dsFile = homeDir.resolve("config/default.developer.properties").toFile();
-			}
-
 			try (FileReader reader = new FileReader(dsFile)) {
 				Properties dsProps = new Properties();
 				dsProps.load(reader);
 				devSettings.updateFromProperties(dsProps);
 				log.info(devSettings);
-				ss.info(this, "Loaded the '" + dsFile.getName() + "' file: "
+				ss.info(this, "Loaded the 'developer.properties' file: "
 						+ devSettings);
 			} catch (FileNotFoundException e) {
-				ss.info(this, "Neither 'developer.properties' nor 'default.developer.properties' " +
+				ss.info(this, "'developer.properties' file does not exist.");
-						"files exist.");
 			} catch (Exception e) {
 				ss.warning(this,
-						"Failed to load the '" + dsFile.getAbsolutePath() + "' file.", e);
+						"Failed to load the 'developer.properties' file.", e);
 			}
 		}
 

api/src/main/java/org/vivoweb/linkeddatafragments/servlet/VitroLinkedDataFragmentServlet.java

@@ -1,15 +1,24 @@
 package org.vivoweb.linkeddatafragments.servlet;
 
-import com.fasterxml.jackson.databind.JsonNode;
+import java.io.IOException;
-import edu.cornell.mannlib.vitro.webapp.beans.Ontology;
+import java.io.InputStream;
-import edu.cornell.mannlib.vitro.webapp.controller.VitroHttpServlet;
+import java.io.StringReader;
-import edu.cornell.mannlib.vitro.webapp.dao.OntologyDao;
+import java.util.HashMap;
-import edu.cornell.mannlib.vitro.webapp.modelaccess.ModelAccess;
+import java.util.List;
-import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
+import java.util.Map.Entry;
-import edu.cornell.mannlib.vitro.webapp.config.ConfigurationProperties;
+
+import javax.servlet.ServletConfig;
+import javax.servlet.ServletContext;
+import javax.servlet.ServletException;
+import javax.servlet.annotation.WebServlet;
+import javax.servlet.http.HttpServletRequest;
+import javax.servlet.http.HttpServletResponse;
+
 import org.apache.commons.io.IOUtils;
-import org.apache.jena.riot.Lang;
 import org.apache.commons.lang3.StringUtils;
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
+import org.apache.jena.riot.Lang;
 import org.linkeddatafragments.config.ConfigReader;
 import org.linkeddatafragments.datasource.DataSourceFactory;
 import org.linkeddatafragments.datasource.DataSourceTypesRegistry;
@@ -22,26 +31,19 @@ import org.linkeddatafragments.fragments.ILinkedDataFragment;
 import org.linkeddatafragments.fragments.ILinkedDataFragmentRequest;
 import org.linkeddatafragments.util.MIMEParse;
 import org.linkeddatafragments.views.ILinkedDataFragmentWriter;
-import org.vivoweb.linkeddatafragments.views.HtmlTriplePatternFragmentWriterImpl;
-import org.vivoweb.linkeddatafragments.views.LinkedDataFragmentWriterFactory;
 import org.vivoweb.linkeddatafragments.datasource.rdfservice.RDFServiceBasedRequestProcessorForTPFs;
 import org.vivoweb.linkeddatafragments.datasource.rdfservice.RDFServiceDataSourceType;
+import org.vivoweb.linkeddatafragments.views.HtmlTriplePatternFragmentWriterImpl;
+import org.vivoweb.linkeddatafragments.views.LinkedDataFragmentWriterFactory;
 
-import javax.servlet.ServletConfig;
+import com.fasterxml.jackson.databind.JsonNode;
-import javax.servlet.ServletContext;
+
-import javax.servlet.ServletException;
+import edu.cornell.mannlib.vitro.webapp.beans.Ontology;
-import javax.servlet.annotation.WebServlet;
+import edu.cornell.mannlib.vitro.webapp.config.ConfigurationProperties;
-import javax.servlet.http.HttpServletRequest;
+import edu.cornell.mannlib.vitro.webapp.controller.VitroHttpServlet;
-import javax.servlet.http.HttpServletResponse;
+import edu.cornell.mannlib.vitro.webapp.dao.OntologyDao;
-import java.io.File;
+import edu.cornell.mannlib.vitro.webapp.modelaccess.ModelAccess;
-import java.io.IOException;
+import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
-import java.io.InputStream;
-import java.io.StringReader;
-import java.util.ArrayList;
-import java.util.Collection;
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map.Entry;
 
 /**
  * Servlet that responds with a Linked Data Fragment.
@@ -52,29 +54,13 @@ public class VitroLinkedDataFragmentServlet extends VitroHttpServlet {
 	private final static long serialVersionUID = 1L;
 	
 	private static final String PROPERTY_TPF_ACTIVE_FLAG = "tpf.activeFlag";
+	private static final Log log = LogFactory.getLog(VitroLinkedDataFragmentServlet.class);
 	
     private ConfigReader config;
     private final HashMap<String, IDataSource> dataSources = new HashMap<>();
-    private final Collection<String> mimeTypes = new ArrayList<>();
     private ConfigurationProperties configProps;
     private String tpfActiveFlag;
 
-    private File getConfigFile(ServletConfig config) throws IOException {
-        String path = config.getServletContext().getRealPath("/");
-        if (path == null) {
-            // this can happen when running standalone
-            path = System.getProperty("user.dir");
-        }
-        File cfg = new File(path, "config-example.json");
-        if (!cfg.exists()) {
-            throw new IOException("Configuration file " + cfg + " not found.");
-        }
-        if (!cfg.isFile()) {
-            throw new IOException("Configuration file " + cfg + " is not a file.");
-        }
-        return cfg;
-    }
-
     @Override
     public void init(ServletConfig servletConfig) throws ServletException {
         try {
@@ -82,11 +68,11 @@ public class VitroLinkedDataFragmentServlet extends VitroHttpServlet {
             configProps = ConfigurationProperties.getBean(ctx);
             
             if (!configurationPresent()) {
-            	throw new ServletException("TPF is currently disabled. To enable, add 'tpfActive.flag=true' to the runtime.properties.");
+            	throw new ServletException("TPF is currently disabled. To enable, add '" 
-            } else {
+                        + PROPERTY_TPF_ACTIVE_FLAG + " = true' to runtime.properties.");
-            	if (!tpfActiveFlag.equalsIgnoreCase("true")) {
+            } else if (!tpfActiveFlag.equalsIgnoreCase("true")) {
-            		throw new ServletException("TPF is currently disabled. To enable, set 'tpfActive.flag=true' in runtime.properties.");
+        		throw new ServletException("TPF is currently disabled. To enable, set '" 
-            	}
+        	            + PROPERTY_TPF_ACTIVE_FLAG + " = true' in runtime.properties.");
             }
             
             RDFService rdfService = ModelAccess.on(ctx).getRDFService();
@@ -215,18 +201,18 @@ public class VitroLinkedDataFragmentServlet extends VitroHttpServlet {
                 writer.writeFragment(response.getOutputStream(), dataSource, fragment, ldfRequest);
 
             } catch (DataSourceNotFoundException ex) {
+                log.error(ex, ex);
                 try {
                     response.setStatus(404);
                     writer.writeNotFound(response.getOutputStream(), request);
                 } catch (Exception ex1) {
+                    log.error(ex1, ex1);
                     throw new ServletException(ex1);
                 }
-            } catch (Exception e) {
-                response.setStatus(500);
-                writer.writeError(response.getOutputStream(), e);
             } 
 
         } catch (Exception e) {
+            log.error(e, e);
             throw new ServletException(e);
         }
         finally {

api/src/test/java/edu/cornell/mannlib/vitro/webapp/dao/jena/RDFServiceGraphTest.java

@@ -0,0 +1,62 @@
+package edu.cornell.mannlib.vitro.webapp.dao.jena;
+
+import static org.junit.Assert.assertEquals;
+
+import org.apache.jena.rdf.model.Model;
+import org.apache.jena.rdf.model.ModelFactory;
+import org.junit.Test;
+
+import edu.cornell.mannlib.vitro.testing.AbstractTestClass;
+import edu.cornell.mannlib.vitro.webapp.rdfservice.ChangeListener;
+import edu.cornell.mannlib.vitro.webapp.rdfservice.ModelChange;
+import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFService;
+import edu.cornell.mannlib.vitro.webapp.rdfservice.RDFServiceException;
+import edu.cornell.mannlib.vitro.webapp.rdfservice.impl.jena.model.RDFServiceModel;
+
+
+public class RDFServiceGraphTest extends AbstractTestClass {
+
+    @Test
+    /**
+     * Test that creating a new model with the same underlying RDFServiceGraph
+     * does not result in a new listener registered on that graph.  No matter
+     * how many models have been created using a given RDFServiceGraph, an event
+     * sent to the last-created model should be heard only once by the 
+     * RDFService.
+     * @throws RDFServiceException
+     */
+    public void testEventListening() throws RDFServiceException {
+        Model m = ModelFactory.createDefaultModel();
+        RDFService rdfService = new RDFServiceModel(m);
+        EventsCounter counter = new EventsCounter();
+        rdfService.registerListener(counter);
+        RDFServiceGraph g = new RDFServiceGraph(rdfService);
+        Model model = null;
+        for (int i = 0; i < 100; i++) {
+            model = RDFServiceGraph.createRDFServiceModel(g);
+        }
+        model.notifyEvent("event");
+        assertEquals(1, counter.getCount());
+    }
+    
+    private class EventsCounter implements ChangeListener {
+
+        private int count = 0;
+        
+        public int getCount() {
+            return count;
+        }
+        
+        @Override
+        public void notifyModelChange(ModelChange modelChange) {
+            // TODO Auto-generated method stub            
+        }
+
+        @Override
+        public void notifyEvent(String graphURI, Object event) {
+            count++;
+        }
+        
+    }
+    
+}

dependencies/pom.xml

@@ -7,13 +7,13 @@
 
     <groupId>org.vivoweb</groupId>
     <artifactId>vitro-dependencies</artifactId>
-    <version>1.11.2-SNAPSHOT</version>
+    <version>1.12.0-SNAPSHOT</version>
     <packaging>pom</packaging>
 
     <parent>
         <groupId>org.vivoweb</groupId>
         <artifactId>vitro-project</artifactId>
-        <version>1.11.2-SNAPSHOT</version>
+        <version>1.12.0-SNAPSHOT</version>
         <relativePath>..</relativePath>
     </parent>
 

home/pom.xml

@@ -7,13 +7,13 @@
 
     <groupId>org.vivoweb</groupId>
     <artifactId>vitro-home</artifactId>
-    <version>1.11.2-SNAPSHOT</version>
+    <version>1.12.0-SNAPSHOT</version>
     <packaging>pom</packaging>
 
     <parent>
         <groupId>org.vivoweb</groupId>
         <artifactId>vitro-project</artifactId>
-        <version>1.11.2-SNAPSHOT</version>
+        <version>1.12.0-SNAPSHOT</version>
         <relativePath>..</relativePath>
     </parent>
 

home/src/main/resources/config/example.applicationSetup.n3

@@ -26,7 +26,7 @@
     :hasSearchIndexer             :basicSearchIndexer ;
     :hasImageProcessor            :iioImageProcessor ;
     :hasFileStorage               :ptiFileStorage ;
-    :hasContentTripleSource       :sdbContentTripleSource ;
+    :hasContentTripleSource       :tdbContentTripleSource ;
     :hasConfigurationTripleSource :tdbConfigurationTripleSource ;
     :hasTBoxReasonerModule        :jfactTBoxReasonerModule .
 
@@ -82,22 +82,22 @@
 # ----------------------------
 #
 # Content triples source module: holds data contents
-#    The SDB-based implementation is the default option. It reads its parameters
+#    The TDB-based implementation is the default option. It reads its parameters
 #    from the runtime.properties file, for backward compatibility.
 #
-#    Other implementations are based on a local TDB instance, a "standard" SPARQL
+#    Other implementations are based on an SDB instance, a "standard" SPARQL
 #    endpoint, or a Virtuoso endpoint, with parameters as shown.
 #
 
-:sdbContentTripleSource
+#:sdbContentTripleSource
-    a   vitroWebapp:triplesource.impl.sdb.ContentTripleSourceSDB ,
+#    a   vitroWebapp:triplesource.impl.sdb.ContentTripleSourceSDB ,
-        vitroWebapp:modules.tripleSource.ContentTripleSource .
+#        vitroWebapp:modules.tripleSource.ContentTripleSource .
 
-#:tdbContentTripleSource
+:tdbContentTripleSource
-#    a   vitroWebapp:triplesource.impl.tdb.ContentTripleSourceTDB ,
+    a   vitroWebapp:triplesource.impl.tdb.ContentTripleSourceTDB ,
-#        vitroWebapp:modules.tripleSource.ContentTripleSource ;
+        vitroWebapp:modules.tripleSource.ContentTripleSource ;
-#    # May be an absolute path, or relative to the Vitro home directory.
+    # May be an absolute path, or relative to the Vitro home directory.
-#    :hasTdbDirectory "tdbContentModels" .
+    :hasTdbDirectory "tdbContentModels" .
 
 #:sparqlContentTripleSource
 #    a   vitroWebapp:triplesource.impl.virtuoso.ContentTripleSourceSPARQL ,

home/src/main/resources/config/example.runtime.properties

@@ -9,53 +9,92 @@
 #
 # -----------------------------------------------------------------------------
 
+#
+# This namespace will be used when generating URIs for objects created in the
+# editor. In order to serve linked data, the default namespace must be composed
+# as follows (optional elements in parentheses):
+#
+# scheme + server_name (+ port) (+ servlet_context) + "/individual/"
+#
+# For example, Cornell's default namespace is:
+#
+# http://vivo.cornell.edu/individual/
+#
+Vitro.defaultNamespace = http://vivo.mydomain.edu/individual/
+
 #
 # URL of Solr context used in local Vitro search. This will usually consist of:
-#     scheme + server_name + port + vitro_webapp_name + "solr"
+#     scheme + server_name + port + "solr" + solr_core_name
-# In the standard installation, the Solr context will be on the same server as Vitro,
+# In a standard Solr installation, the Solr service will be available on port
-# and in the same Tomcat instance. The path will be the Vitro webapp.name (specified
+# 8983. The path will be /solr followed by the name used when adding a core
-# above) + "solr"
+# for Vitro.
 #   Example:
-#     vitro.local.solr.url = http://localhost:8080/vitrosolr
+#     vitro.local.solr.url = http://localhost:8983/solr/vitrocore
-vitro.local.solr.url = http://localhost:8080/vitrosolr
+#
+vitro.local.solr.url = http://localhost:8983/solr/vitrocore
 
 #
 # Email parameters which VIVO can use to send mail. If these are left empty,
 # the "Contact Us" form will be disabled and users will not be notified of
 # changes to their accounts.
+  #   Example:
+  #     email.smtpHost = smtp.mydomain.edu
+  #     email.replyTo = vitroAdmin@mydomain.edu
   #
-email.smtpHost = smtp.my.domain.edu
+email.smtpHost =
-email.replyTo = vivoAdmin@my.domain.edu
+email.replyTo =
 
 #
-# The basic parameters for a MySQL database connection. Change the end of the
+# NOTE: VitroConnection.DataSource.* properties are only used in conjuction with
-# URL to reflect your database name (if it is not "vitro"). Change the username
+#       an SDB triple store.
-# and password to match the authorized user you created in MySQL.
 #
-VitroConnection.DataSource.url = jdbc:mysql://localhost/vitro
+# The basic parameters for a database connection. Change the end of the
-VitroConnection.DataSource.username = vitroweb
+# URL to reflect your database name (if it is not "vitrodb"). Change the username
-VitroConnection.DataSource.password = vitrovitro
+# and password to match the authorized database user you created.
+#
+# VitroConnection.DataSource.url = jdbc:mysql://localhost/vitrodb
+# VitroConnection.DataSource.username = vitrodbUsername
+# VitroConnection.DataSource.password = vitrodbPassword
 
 #
 # The maximum number of active connections in the database connection pool.
 # Increase this value to support a greater number of concurrent page requests.
 #
-VitroConnection.DataSource.pool.maxActive = 40
+# VitroConnection.DataSource.pool.maxActive = 40
 
 #
 # The maximum number of database connections that will be allowed
 # to remain idle in the connection pool.  Default is 25%
 # of the maximum number of active connections.
 #
-VitroConnection.DataSource.pool.maxIdle = 10
+# VitroConnection.DataSource.pool.maxIdle = 10
 
 #
-# Parameters to change in order to use VIVO with a database other than
+# Parameters to change in order to use Vitro with a database other than
 # MySQL.
 #
-VitroConnection.DataSource.dbtype = MySQL
+# VitroConnection.DataSource.dbtype = MySQL
-VitroConnection.DataSource.driver = com.mysql.jdbc.Driver
+# VitroConnection.DataSource.driver = com.mysql.jdbc.Driver
-VitroConnection.DataSource.validationQuery = SELECT 1
+# VitroConnection.DataSource.validationQuery = SELECT 1
+
+#
+# Include sections between <precise-subquery></precise-subquery>
+# tags when executing 'list view' queries that retrieve data
+# for property lists on profile pages.
+#
+# Including these optional sections does not change the query
+# semantics, but may improve performance.
+#
+# Default is true if not set.
+#
+# listview.usePreciseSubquery = true
+
+#
+# The email address of the root user for the VIVO application. The password
+# for this user is initially set to "rootPassword", but you will be asked to
+# change the password the first time you log in.
+#
+rootUser.emailAddress = root@myDomain.com
 
 #
 # Argon2 password hashing parameters for time, memory and parallelism required to
@@ -134,7 +173,15 @@ proxy.eligibleTypeList = http://www.w3.org/2002/07/owl#Thing
 #
 # languages.selectableLocales = en, es, fr
 
-# Triple pattern fragments is a very fast, very simple means for querying a triple store.
+# Triple Pattern Fragments is a very fast, very simple means for querying a
-# The triple pattern fragments API in VIVO puts little load on the server, providing a simple means for getting data from the triple store. The API has a web interface for manual use, can be used from the command line via curl, and can be used by programs.
+# triple store.  The Triple Pattern Fragments API in VIVO puts little load on
-
+# the server, providing a simple means for getting data from the triple store.
+# The API has a web interface for manual use, can be used from the command line
+# via curl, and can be used by programs.
+#
+# Vitro's Triple Pattern Fragments API does not require authentication and
+# makes the full RDF graph available regardless of display or publish levels
+# set on particular properties.  Enable Triple Pattern Fragments only if your
+# Vitro does not contain restricted data that should not be shared with others.
+#
 # tpf.activeFlag = true

installer/example-settings.xml

@@ -0,0 +1,21 @@
+<settings xmlns="http://maven.apache.org/SETTINGS/1.1.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+          xsi:schemaLocation="http://maven.apache.org/SETTINGS/1.1.0 http://maven.apache.org/xsd/settings-1.1.0.xsd">
+
+    <profiles>
+        <profile>
+            <id>defaults</id>
+            <properties>
+                <app-name>vitro</app-name>
+
+                <vitro-dir>/usr/local/vitro/home</vitro-dir>
+                <tomcat-dir>/usr/local/tomcat</tomcat-dir>
+
+                <default-theme>vitro</default-theme>
+            </properties>
+        </profile>
+    </profiles>
+
+    <activeProfiles>
+        <activeProfile>defaults</activeProfile>
+    </activeProfiles>
+</settings>

installer/home/pom.xml

@@ -7,13 +7,13 @@
 
     <groupId>org.vivoweb</groupId>
     <artifactId>vitro-installer-home</artifactId>
-    <version>1.11.2-SNAPSHOT</version>
+    <version>1.12.0-SNAPSHOT</version>
     <packaging>pom</packaging>
 
     <parent>
         <groupId>org.vivoweb</groupId>
         <artifactId>vitro-installer</artifactId>
-        <version>1.11.2-SNAPSHOT</version>
+        <version>1.12.0-SNAPSHOT</version>
         <relativePath>..</relativePath>
     </parent>
 

installer/pom.xml

@@ -7,13 +7,13 @@
 
     <groupId>org.vivoweb</groupId>
     <artifactId>vitro-installer</artifactId>
-    <version>1.11.2-SNAPSHOT</version>
+    <version>1.12.0-SNAPSHOT</version>
     <packaging>pom</packaging>
 
     <parent>
         <groupId>org.vivoweb</groupId>
         <artifactId>vitro-project</artifactId>
-        <version>1.11.2-SNAPSHOT</version>
+        <version>1.12.0-SNAPSHOT</version>
         <relativePath>..</relativePath>
     </parent>
 

installer/solr/pom.xml

@@ -7,13 +7,13 @@
 
     <groupId>org.vivoweb</groupId>
     <artifactId>vitro-installer-solr</artifactId>
-    <version>1.11.0-SNAPSHOT</version>
+    <version>1.12.0-SNAPSHOT</version>
     <packaging>war</packaging>
 
     <parent>
         <groupId>org.vivoweb</groupId>
         <artifactId>vitro-installer</artifactId>
-        <version>1.11.0-SNAPSHOT</version>
+        <version>1.12.0-SNAPSHOT</version>
         <relativePath>..</relativePath>
     </parent>
 

installer/webapp/pom.xml

@@ -7,13 +7,13 @@
 
     <groupId>org.vivoweb</groupId>
     <artifactId>vitro-installer-webapp</artifactId>
-    <version>1.11.2-SNAPSHOT</version>
+    <version>1.12.0-SNAPSHOT</version>
     <packaging>war</packaging>
 
     <parent>
         <groupId>org.vivoweb</groupId>
         <artifactId>vitro-installer</artifactId>
-        <version>1.11.2-SNAPSHOT</version>
+        <version>1.12.0-SNAPSHOT</version>
         <relativePath>..</relativePath>
     </parent>
 

installer/webapp/src/main/webResources/META-INF/context.xml

@@ -1,51 +1,8 @@
 <Context> <!-- useHttpOnly="false" -->
-
-   <!--
-     # The 'home' property specifies the location of Vitro HOME.
-     # The system user used to run the Vitro web application must have write access
-     # to the parent directory of the directory defined in this property, if Vitro HOME
-     # does not already exist.
-     # If this directory already exists, the system user used to run the Vitro web application
-     # must have write access to this directory.
-   -->
    <Environment
            type="java.lang.String"
            name="vitro/home"
-           value="${vivo-dir}" override="true"/>
+           value="${vitro-dir}" override="true"/>
-
-   <!--
-     # The name of the application (possibly not used).
-   -->
-   <Environment
-           type="java.lang.String"
-           name="vitro/appName"
-           value="vivo" override="true"/>
-
-   <!--
-     # The email address of the root user for the Vitro application. The password
-     # for this user is initially set to "rootPassword", but you will be asked to
-     # change the password the first time you log in.
-   -->
-   <Environment
-           type="java.lang.String"
-           name="vitro/rootUserAddress"
-           value="vivo_root@mydomain.edu" override="true"/>
-
-   <!--
-     # This namespace will be used when generating URIs for objects created in the
-     # editor. In order to serve linked data, the default namespace must be composed
-     # as follows (optional elements in parentheses):
-     #
-     # scheme + server_name (+ port) (+ servlet_context) + "/individual/"
-     #
-     # For example, Cornell's default namespace is:
-     #
-     # http://vivo.cornell.edu/individual/
-   -->
-   <Environment
-           type="java.lang.String"
-           name="vitro/defaultNamespace"
-           value="http://vivo.mydomain.edu/individual/" override="true"/>
 
    <!-- Disable persist sessions on shut down.-->
    <Manager pathname="" />

pom.xml

@@ -7,7 +7,7 @@
 
     <groupId>org.vivoweb</groupId>
     <artifactId>vitro-project</artifactId>
-    <version>1.11.2-SNAPSHOT</version>
+    <version>1.12.0-SNAPSHOT</version>
     <packaging>pom</packaging>
 
     <name>Vitro</name>

webapp/pom.xml

@@ -7,13 +7,13 @@
 
     <groupId>org.vivoweb</groupId>
     <artifactId>vitro-webapp</artifactId>
-    <version>1.11.2-SNAPSHOT</version>
+    <version>1.12.0-SNAPSHOT</version>
     <packaging>war</packaging>
 
     <parent>
         <groupId>org.vivoweb</groupId>
         <artifactId>vitro-project</artifactId>
-        <version>1.11.2-SNAPSHOT</version>
+        <version>1.12.0-SNAPSHOT</version>
         <relativePath>..</relativePath>
     </parent>
 
@@ -41,7 +41,7 @@
         <dependency>
             <groupId>org.vivoweb</groupId>
             <artifactId>vitro-api</artifactId>
-            <version>1.11.2-SNAPSHOT</version>
+            <version>1.12.0-SNAPSHOT</version>
         </dependency>
     </dependencies>
 </project>

webapp/src/main/webapp/templates/freemarker/body/accounts/userAccounts-createPassword.ftl

@@ -26,7 +26,7 @@
 
     <form method="POST" action="${formUrls.createPassword}" class="customForm" role="create password">
         <input type="hidden" name="user" value="${userAccount.emailAddress}" role="input" />
-        <input type="hidden" name="key"  value="${userAccount.passwordLinkExpiresHash}" role="input" />
+        <input type="hidden" name="key"  value="${userAccount.emailKey}" role="input" />
 
         <label for="new-password">${strings.new_password}<span class="requiredHint"> *</span></label>
         <input type="password" name="newPassword" value="${newPassword}" id="new-password" role="input" />

webapp/src/main/webapp/templates/freemarker/body/accounts/userAccounts-resetPassword.ftl

@@ -26,7 +26,7 @@
 <section id="reset-password" role="region">
     <form method="POST" action="${formUrls.resetPassword}" class="customForm" role="create password">
         <input type="hidden" name="user" value="${userAccount.emailAddress}" />
-        <input type="hidden" name="key"  value="${userAccount.passwordLinkExpiresHash}" />
+        <input type="hidden" name="key"  value="${userAccount.emailKey}" />
 
         <label for="new-password">${strings.new_password}<span class="requiredHint"> *</span></label>
         <input type="password" name="newPassword" value="${newPassword}" id="new-password" role="input" />

webapp/src/main/webapp/templates/freemarker/lib/lib-properties.ftl

@@ -183,16 +183,16 @@ name will be used as the label. -->
 	<#local url = statement.editUrl>
 	<#if url?has_content>
 		<#if propertyLocalName?contains("ARG_2000028")>
-		    <#if rangeUri?contains("Address")>
+		    <#if rangeUri?contains("Address") && statement.address??>
-		        <#local url = url + "&addressUri=" + "${statement.address!}">
+		        <#local url = url + "&addressUri=" + "${statement.address?url}">
-		    <#elseif rangeUri?contains("Telephone") || rangeUri?contains("Fax")>
+		    <#elseif (rangeUri?contains("Telephone") || rangeUri?contains("Fax")) && statement.phone??>
-		        <#local url = url + "&phoneUri=" + "${statement.phone!}">
+		        <#local url = url + "&phoneUri=" + "${statement.phone?url}">
-		    <#elseif rangeUri?contains("Work") || rangeUri?contains("Email")>
+		    <#elseif (rangeUri?contains("Work") || rangeUri?contains("Email")) && statement.email??>
-		        <#local url = url + "&emailUri=" + "${statement.email!}">
+		        <#local url = url + "&emailUri=" + "${statement.email?url}">
-		    <#elseif rangeUri?contains("Name")>
+		    <#elseif rangeUri?contains("Name") && statement.fullName??>
-		        <#local url = url + "&fullNameUri=" + "${statement.fullName!}">
+		        <#local url = url + "&fullNameUri=" + "${statement.fullName?url}">
-		    <#elseif rangeUri?contains("Title")>
+		    <#elseif rangeUri?contains("Title") && statement.title??>
-		        <#local url = url + "&titleUri=" + "${statement.title!}">
+		        <#local url = url + "&titleUri=" + "${statement.title?url}">
 		    </#if>
 		</#if>
         <@showEditLink propertyLocalName rangeUri url />

webapp/src/main/webapp/templates/freemarker/page/partials/doctype.html

@@ -1,3 +1,3 @@
 <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
     "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
-<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="${country}" lang="${country}">

webapp/src/main/webapp/themes/vitro/templates/page-home.ftl

@@ -4,7 +4,7 @@
 <#import "lib-home-page.ftl" as lh>
 
 <!DOCTYPE html>
-<html lang="en">
+<html lang="${country}">
     <head>
         <#include "head.ftl">
     </head>

webapp/src/main/webapp/themes/vitro/templates/page.ftl

@@ -3,7 +3,7 @@
 <#import "lib-list.ftl" as l>
 
 <!DOCTYPE html>
-<html lang="en">
+<html lang="${country}">
     <head>
         <#include "head.ftl">
     </head>