some refactoring of SimpleReasoner
This commit is contained in:
stellamit
parent
b84407eba2
commit
5a7f70e1d7
2 changed files with 201 additions and 198 deletions
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@ -144,6 +144,7 @@ public class SimpleReasoner extends StatementListener {
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} catch (Exception e) {
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// don't stop the edit if there's an exception
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log.error("Exception while computing inferences: " + e.getMessage());
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e.printStackTrace();
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}
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}
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@ -164,6 +165,7 @@ public class SimpleReasoner extends StatementListener {
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} catch (Exception e) {
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// don't stop the edit if there's an exception
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log.error("Exception while retracting inferences: ", e);
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e.printStackTrace();
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}
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}
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@ -339,7 +341,6 @@ public class SimpleReasoner extends StatementListener {
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StmtIterator iter = null;
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aboxModel.enterCriticalSection(Lock.READ);
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try {
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iter = aboxModel.listStatements(individual, RDF.type, (RDFNode) null);
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@ -370,13 +371,11 @@ public class SimpleReasoner extends StatementListener {
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cls = tboxModel.getOntClass(stmt.getObject().asResource().getURI());
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if (cls != null) {
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List<OntClass> parents = (cls.listSuperClasses(false)).toList();
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parents.addAll((cls.listEquivalentClasses()).toList());
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Iterator<OntClass> parentIt = parents.iterator();
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if (parentIt.hasNext()) {
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List<Resource> sameIndividuals = getSameIndividuals(stmt.getSubject().asResource(), inferenceModel);
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while (parentIt.hasNext()) {
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OntClass parentClass = parentIt.next();
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@ -387,28 +386,7 @@ public class SimpleReasoner extends StatementListener {
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if (parentClass.isAnon()) continue;
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Statement infStmt = ResourceFactory.createStatement(stmt.getSubject(), RDF.type, parentClass);
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aboxModel.enterCriticalSection(Lock.READ);
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try {
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inferenceModel.enterCriticalSection(Lock.WRITE);
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try {
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if (!inferenceModel.contains(infStmt) && !aboxModel.contains(infStmt)) {
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inferenceModel.add(infStmt);
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}
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Iterator<Resource> sameIter = sameIndividuals.iterator();
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while (sameIter.hasNext()) {
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Resource subject = sameIter.next();
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if (!inferenceModel.contains(subject,infStmt.getPredicate(),infStmt.getObject()) && !aboxModel.contains(subject,infStmt.getPredicate(),infStmt.getObject())) {
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inferenceModel.add(subject,infStmt.getPredicate(),infStmt.getObject());
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}
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}
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} finally {
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inferenceModel.leaveCriticalSection();
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}
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} finally {
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aboxModel.leaveCriticalSection();
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}
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addInference(infStmt,inferenceModel,true);
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}
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}
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} else {
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@ -427,6 +405,15 @@ public class SimpleReasoner extends StatementListener {
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} finally {
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tboxModel.leaveCriticalSection();
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}
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inferenceModel.enterCriticalSection(Lock.WRITE);
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try {
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if (inferenceModel.contains(stmt)) {
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inferenceModel.remove(stmt);
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}
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} finally {
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inferenceModel.leaveCriticalSection();
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}
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}
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/*
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@ -471,24 +458,17 @@ public class SimpleReasoner extends StatementListener {
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while (infIter.hasNext()) {
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Statement infStmt = infIter.next();
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aboxModel.enterCriticalSection(Lock.READ);
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try {
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inferenceModel.enterCriticalSection(Lock.WRITE);
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try {
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if (inferenceModel.contains(stmt)) {
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inferenceModel.remove(stmt);
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}
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if (!inferenceModel.contains(infStmt) && !aboxModel.contains(infStmt) ) {
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inferenceModel.add(infStmt);
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}
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} finally {
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inferenceModel.leaveCriticalSection();
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}
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} finally {
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aboxModel.leaveCriticalSection();
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}
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addInference(infStmt,inferenceModel,false);
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}
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inferenceModel.enterCriticalSection(Lock.WRITE);
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try {
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if (inferenceModel.contains(stmt)) {
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inferenceModel.remove(stmt);
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}
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} finally {
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inferenceModel.leaveCriticalSection();
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}
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}
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/*
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@ -531,17 +511,20 @@ public class SimpleReasoner extends StatementListener {
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ArrayList<Resource> sameIndividuals = new ArrayList<Resource>();
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aboxModel.enterCriticalSection(Lock.READ);
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inferenceModel.enterCriticalSection(Lock.READ);
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try {
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Iterator<Statement> iter = unionModel.listStatements(ind, OWL.sameAs, (RDFNode) null);
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inferenceModel.enterCriticalSection(Lock.READ);
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try {
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Iterator<Statement> iter = unionModel.listStatements(ind, OWL.sameAs, (RDFNode) null);
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while (iter.hasNext()) {
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Statement stmt = iter.next();
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if (stmt.getObject() == null || !stmt.getObject().isResource() || stmt.getObject().asResource().getURI() == null) continue;
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sameIndividuals.add(stmt.getObject().asResource());
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while (iter.hasNext()) {
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Statement stmt = iter.next();
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if (stmt.getObject() == null || !stmt.getObject().isResource() || stmt.getObject().asResource().getURI() == null) continue;
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sameIndividuals.add(stmt.getObject().asResource());
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}
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} finally {
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inferenceModel.leaveCriticalSection();
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}
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} finally {
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inferenceModel.leaveCriticalSection();
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aboxModel.leaveCriticalSection();
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}
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@ -555,6 +538,7 @@ public class SimpleReasoner extends StatementListener {
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* the inference graph and then recompute the inferences for x and
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* y based on their respective assertions. that x owl:sameAs y, then all asserted and inferred
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*/
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//TODO - I think I need to handle sameAs chains here
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public void removedABoxSameAsAssertion(Statement stmt, Model inferenceModel) {
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Resource subject = null;
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@ -582,19 +566,8 @@ public class SimpleReasoner extends StatementListener {
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return;
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}
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inferenceModel.enterCriticalSection(Lock.WRITE);
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try {
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if (inferenceModel.contains(stmt)) {
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inferenceModel.remove(stmt);
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}
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if (!inferenceModel.contains(object, OWL.sameAs, subject) && !aboxModel.contains(object, OWL.sameAs, subject) ) {
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inferenceModel.add(object, OWL.sameAs, subject);
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}
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} finally {
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inferenceModel.leaveCriticalSection();
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}
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Statement infStmt = ResourceFactory.createStatement(object,OWL.sameAs,subject);
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removeInference(infStmt,inferenceModel,false);
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recomputeInferencesForIndividual(subject, inferenceModel);
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recomputeInferencesForIndividual(object, inferenceModel);
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}
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@ -643,57 +616,36 @@ public class SimpleReasoner extends StatementListener {
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* Performs incremental property-based reasoning.
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*
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* Materializes inferences based on the owl:inverseOf relationship.
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* and owl:sameAs
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*
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* If it is added that x prop1 y, and prop2 is an inverseOf prop1
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* then add y prop2 x to the inference graph, if it is not already in
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* the assertions graph.
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*
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*/
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public void addedABoxAssertion(Statement stmt, Model inferenceModel) {
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List<Resource> sameIndividuals = getSameIndividuals(stmt.getSubject().asResource(), inferenceModel);
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List<OntProperty> inverseProperties = getInverseProperties(stmt);
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Iterator<OntProperty> inverseIter = inverseProperties.iterator();
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while (inverseIter.hasNext()) {
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Property inverseProp = inverseIter.next();
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Statement infStmt = ResourceFactory.createStatement(stmt.getObject().asResource(), inverseProp, stmt.getSubject());
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aboxModel.enterCriticalSection(Lock.READ);
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try {
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inferenceModel.enterCriticalSection(Lock.WRITE);
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try {
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if (!inferenceModel.contains(infStmt) && !aboxModel.contains(infStmt) ) {
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inferenceModel.add(infStmt);
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}
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Iterator<Resource> sameIter = sameIndividuals.iterator();
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while (sameIter.hasNext()) {
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Resource subject = sameIter.next();
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if (!inferenceModel.contains(subject,infStmt.getPredicate(),infStmt.getObject()) && !aboxModel.contains(subject,infStmt.getPredicate(),infStmt.getObject())) {
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inferenceModel.add(subject,infStmt.getPredicate(),infStmt.getObject());
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}
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}
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} finally {
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inferenceModel.leaveCriticalSection();
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}
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} finally {
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aboxModel.leaveCriticalSection();
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}
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addInference(infStmt,inferenceModel,true);
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}
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List<Resource> sameIndividuals = getSameIndividuals(stmt.getSubject().asResource(), inferenceModel);
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Iterator<Resource> sameIter = sameIndividuals.iterator();
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while (sameIter.hasNext()) {
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Resource subject = sameIter.next();
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Statement sameStmt = ResourceFactory.createStatement(subject,stmt.getPredicate(),stmt.getObject());
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addInference(sameStmt,inferenceModel,false);
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}
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inferenceModel.enterCriticalSection(Lock.WRITE);
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try {
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if (inferenceModel.contains(stmt)) {
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inferenceModel.remove(stmt);
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}
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Iterator<Resource> sameIter = sameIndividuals.iterator();
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while (sameIter.hasNext()) {
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Resource subject = sameIter.next();
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if (!inferenceModel.contains(subject,stmt.getPredicate(),stmt.getObject()) && !aboxModel.contains(subject,stmt.getPredicate(),stmt.getObject())) {
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inferenceModel.add(subject,stmt.getPredicate(),stmt.getObject());
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}
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}
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} finally {
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inferenceModel.leaveCriticalSection();
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}
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@ -706,9 +658,7 @@ public class SimpleReasoner extends StatementListener {
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*
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*/
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protected void removedABoxTypeAssertion(Statement stmt, Model inferenceModel) {
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tboxModel.enterCriticalSection(Lock.READ);
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try {
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OntClass cls = null;
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@ -786,48 +736,29 @@ public class SimpleReasoner extends StatementListener {
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*/
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public void removedABoxAssertion(Statement stmt, Model inferenceModel) {
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List<Resource> sameIndividuals = getSameIndividuals(stmt.getSubject().asResource(), inferenceModel);
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List<OntProperty> inverseProperties = getInverseProperties(stmt);
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Iterator<OntProperty> inverseIter = inverseProperties.iterator();
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while (inverseIter.hasNext()) {
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OntProperty inverseProp = inverseIter.next();
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Statement infStmt = ResourceFactory.createStatement(stmt.getObject().asResource(), inverseProp, stmt.getSubject());
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inferenceModel.enterCriticalSection(Lock.WRITE);
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try {
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if (!entailedStatement(infStmt) && inferenceModel.contains(infStmt)) {
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inferenceModel.remove(infStmt);
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}
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Iterator<Resource> sameIter = sameIndividuals.iterator();
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while (sameIter.hasNext()) {
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Statement infStmtSame = ResourceFactory.createStatement(sameIter.next(), infStmt.getPredicate(), infStmt.getObject());
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if (!entailedStatement(infStmtSame) && inferenceModel.contains(infStmtSame)) {
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inferenceModel.remove(infStmtSame);
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}
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}
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} finally {
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inferenceModel.leaveCriticalSection();
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}
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removeInference(infStmt,inferenceModel,true);
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}
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List<Resource> sameIndividuals = getSameIndividuals(stmt.getSubject().asResource(), inferenceModel);
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Iterator<Resource> sameIter = sameIndividuals.iterator();
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while (sameIter.hasNext()) {
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Statement stmtSame = ResourceFactory.createStatement(sameIter.next(), stmt.getPredicate(), stmt.getObject());
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removeInference(stmtSame,inferenceModel,false);
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}
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// if a statement has been removed that is otherwise entailed,
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// add it to the inference graph.
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inferenceModel.enterCriticalSection(Lock.WRITE);
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try {
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// if a statement has been removed that is otherwise entailed,
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// add it to the inference graph.
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if (entailedStatement(stmt) && !inferenceModel.contains(stmt)) {
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inferenceModel.add(stmt);
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}
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Iterator<Resource> sameIter = sameIndividuals.iterator();
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while (sameIter.hasNext()) {
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Statement stmtSame = ResourceFactory.createStatement(sameIter.next(), stmt.getPredicate(), stmt.getObject());
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if (!entailedStatement(stmtSame) && inferenceModel.contains(stmtSame)) {
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inferenceModel.remove(stmtSame);
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}
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}
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} finally {
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inferenceModel.leaveCriticalSection();
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}
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@ -868,29 +799,16 @@ public class SimpleReasoner extends StatementListener {
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// reasoning or sameAs reasoning; otherwise returns false.
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protected boolean entailedStatement(Statement stmt) {
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List<OntProperty> inverses = new ArrayList<OntProperty>();
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// class subsumption
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tboxModel.enterCriticalSection(Lock.READ);
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try {
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OntProperty prop = tboxModel.getOntProperty(stmt.getPredicate().asResource().getURI());
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inverses.addAll(prop.listInverse().toList());
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} finally {
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tboxModel.leaveCriticalSection();
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}
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Iterator<OntProperty> oIter = inverses.iterator();
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if (oIter.hasNext()) {
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// Inverse properties
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List<OntProperty> inverses = getInverseProperties(stmt);
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Iterator<OntProperty> iIter = inverses.iterator();
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if (iIter.hasNext()) {
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aboxModel.enterCriticalSection(Lock.READ);
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try {
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while (oIter.hasNext()) {
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Property invProp = oIter.next();
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// not reasoning on properties in the OWL, RDF or RDFS namespace
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if ((invProp.getNameSpace()).equals(OWL.NS) ||
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(invProp.getNameSpace()).equals(RDFS.getURI()) ||
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(invProp.getNameSpace()).equals(RDF.getURI())) {
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continue;
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}
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while (iIter.hasNext()) {
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Property invProp = iIter.next();
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Statement invStmt = ResourceFactory.createStatement(stmt.getObject().asResource(), invProp, stmt.getSubject());
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if (aboxModel.contains(invStmt)) {
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@ -902,6 +820,7 @@ public class SimpleReasoner extends StatementListener {
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}
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}
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// individuals sameAs each other
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List<Resource> sameIndividuals = getSameIndividuals(stmt.getSubject().asResource(),inferenceModel);
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Iterator<Resource> rIter = sameIndividuals.iterator();
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if (rIter.hasNext()) {
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@ -997,6 +916,13 @@ public class SimpleReasoner extends StatementListener {
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aboxModel.leaveCriticalSection();
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}
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for (Resource subject : subjectList) {
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Statement infStmt = ResourceFactory.createStatement(subject, RDF.type, superClass);
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addInference(infStmt, inferenceModel, true);
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setMostSpecificTypes(infStmt.getSubject(), inferenceModel, new HashSet<String>());
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}
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/*
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for (Resource subject : subjectList) {
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Statement infStmt = ResourceFactory.createStatement(subject, RDF.type, superClass);
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@ -1014,6 +940,7 @@ public class SimpleReasoner extends StatementListener {
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aboxModel.leaveCriticalSection();
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}
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}
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*/
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}
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/*
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@ -1081,33 +1008,11 @@ public class SimpleReasoner extends StatementListener {
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if (inferences.isEmpty()) return;
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aboxModel.enterCriticalSection(Lock.READ);
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try {
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StmtIterator iter = inferences.listStatements();
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StmtIterator iter = inferences.listStatements();
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while (iter.hasNext()) {
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Statement infStmt = iter.next();
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List<Resource> sameIndividuals = getSameIndividuals(infStmt.getSubject().asResource(), inferenceModel);
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inferenceModel.enterCriticalSection(Lock.WRITE);
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try {
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if (!inferenceModel.contains(infStmt) && !aboxModel.contains(infStmt)) {
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inferenceModel.add(infStmt);
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}
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Iterator<Resource> sameIter = sameIndividuals.iterator();
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while (sameIter.hasNext()) {
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Resource subject = sameIter.next();
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if (!inferenceModel.contains(subject,infStmt.getPredicate(),infStmt.getObject()) && !aboxModel.contains(subject,infStmt.getPredicate(),infStmt.getObject())) {
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inferenceModel.add(subject,infStmt.getPredicate(),infStmt.getObject());
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}
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}
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} finally {
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inferenceModel.leaveCriticalSection();
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}
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}
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} finally {
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aboxModel.leaveCriticalSection();
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while (iter.hasNext()) {
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Statement infStmt = iter.next();
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addInference(infStmt, inferenceModel, true);
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}
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}
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@ -1162,17 +1067,103 @@ public class SimpleReasoner extends StatementListener {
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continue;
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}
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removeInference(infStmt,inferenceModel,true);
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}
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}
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/*
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* Remove an inference from the inference model
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*
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* Removes the inference if it is not entailed by the abox model
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* and if the inference model contains it.
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*
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* Removes the corresponding inference for each same individual
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* if that inference is not entailed by the abox model.
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*/
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protected void removeInference(Statement infStmt, Model inferenceModel, boolean handleSameAs) {
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inferenceModel.enterCriticalSection(Lock.WRITE);
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try {
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if ( !entailedStatement(infStmt) && inferenceModel.contains(infStmt)) {
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inferenceModel.remove(infStmt);
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}
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} finally {
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inferenceModel.leaveCriticalSection();
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}
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if (handleSameAs) {
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inferenceModel.enterCriticalSection(Lock.WRITE);
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try {
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if (inferenceModel.contains(infStmt)) {
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inferenceModel.remove(infStmt);
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}
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} finally {
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inferenceModel.leaveCriticalSection();
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}
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List<Resource> sameIndividuals = getSameIndividuals(infStmt.getSubject().asResource(), inferenceModel);
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Iterator<Resource> sameIter = sameIndividuals.iterator();
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while (sameIter.hasNext()) {
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Statement infStmtSame = ResourceFactory.createStatement(sameIter.next(), infStmt.getPredicate(), infStmt.getObject());
|
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if (!entailedStatement(infStmtSame) && inferenceModel.contains(infStmtSame)) {
|
||||
inferenceModel.remove(infStmtSame);
|
||||
}
|
||||
}
|
||||
} finally {
|
||||
inferenceModel.leaveCriticalSection();
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
/*
|
||||
* Add an inference from the inference model
|
||||
*
|
||||
* Adds the inference to the inference model if it is not already in
|
||||
* the inference model and not in the abox model.
|
||||
*/
|
||||
protected void addInference(Statement infStmt, Model inferenceModel, boolean handleSameAs) {
|
||||
|
||||
aboxModel.enterCriticalSection(Lock.READ);
|
||||
try {
|
||||
inferenceModel.enterCriticalSection(Lock.WRITE);
|
||||
try {
|
||||
if (!inferenceModel.contains(infStmt) && !aboxModel.contains(infStmt)) {
|
||||
inferenceModel.add(infStmt);
|
||||
}
|
||||
|
||||
if (handleSameAs) {
|
||||
List<Resource> sameIndividuals = getSameIndividuals(infStmt.getSubject().asResource(), inferenceModel);
|
||||
Iterator<Resource> sameIter = sameIndividuals.iterator();
|
||||
while (sameIter.hasNext()) {
|
||||
Resource subject = sameIter.next();
|
||||
if (!inferenceModel.contains(subject,infStmt.getPredicate(),infStmt.getObject()) && !aboxModel.contains(subject,infStmt.getPredicate(),infStmt.getObject())) {
|
||||
inferenceModel.add(subject,infStmt.getPredicate(),infStmt.getObject());
|
||||
}
|
||||
}
|
||||
}
|
||||
} finally {
|
||||
inferenceModel.leaveCriticalSection();
|
||||
}
|
||||
} finally {
|
||||
aboxModel.leaveCriticalSection();
|
||||
}
|
||||
|
||||
/*
|
||||
System.out.println("hello!!! ONE");
|
||||
if (handleSameAs) {
|
||||
System.out.println("hello!!! TWO");
|
||||
aboxModel.enterCriticalSection(Lock.READ);
|
||||
System.out.println("hello!!! TRES");
|
||||
try {
|
||||
List<Resource> sameIndividuals = getSameIndividuals(infStmt.getSubject().asResource(), inferenceModel);
|
||||
Iterator<Resource> sameIter = sameIndividuals.iterator();
|
||||
while (sameIter.hasNext()) {
|
||||
Resource subject = sameIter.next();
|
||||
if (!inferenceModel.contains(subject,infStmt.getPredicate(),infStmt.getObject()) && !aboxModel.contains(subject,infStmt.getPredicate(),infStmt.getObject())) {
|
||||
inferenceModel.add(subject,infStmt.getPredicate(),infStmt.getObject());
|
||||
}
|
||||
}
|
||||
} finally {
|
||||
aboxModel.leaveCriticalSection();
|
||||
}
|
||||
}
|
||||
*/
|
||||
}
|
||||
|
||||
/*
|
||||
* Find the most specific types (classes) of an individual and
|
||||
* indicate them for the individual with the mostSpecificType
|
||||
|
|
|
|||
|
|
@ -295,11 +295,11 @@ public class SimpleReasonerSameAsTest extends AbstractTestClass {
|
|||
}
|
||||
|
||||
/*
|
||||
* adding an inverseOf assertion for individuals who are sameAs
|
||||
* each other.
|
||||
* adding and removing an inverseOf assertion for individuals who
|
||||
* are sameAs each other.
|
||||
*/
|
||||
@Test
|
||||
public void addTBoxInverseAssertion1() throws InterruptedException {
|
||||
public void tBoxInverseAssertion1() throws InterruptedException {
|
||||
|
||||
// Create TBox, ABox and Inference models and register
|
||||
// the ABox reasoner listeners with the ABox and TBox
|
||||
|
|
@ -329,9 +329,6 @@ public class SimpleReasonerSameAsTest extends AbstractTestClass {
|
|||
aBox.add(a,P,b);
|
||||
aBox.add(a, OWL.sameAs,b);
|
||||
|
||||
// Assert P and Q as inverses and wait for SimpleReasoner TBox
|
||||
// thread to end
|
||||
|
||||
Q.addInverseOf(P);
|
||||
|
||||
tBox.rebind();
|
||||
|
|
@ -341,14 +338,29 @@ public class SimpleReasonerSameAsTest extends AbstractTestClass {
|
|||
Thread.sleep(delay);
|
||||
}
|
||||
|
||||
// Verify inferences
|
||||
Assert.assertTrue(inf.contains(b,Q,a));
|
||||
Assert.assertTrue(inf.contains(b,OWL.sameAs,a));
|
||||
Assert.assertTrue(inf.contains(b,P,b));
|
||||
Assert.assertTrue(inf.contains(a,Q,a));
|
||||
|
||||
Q.removeInverseProperty(P);
|
||||
|
||||
tBox.rebind();
|
||||
tBox.prepare();
|
||||
|
||||
while (!VitroBackgroundThread.getLivingThreads().isEmpty()) {
|
||||
Thread.sleep(delay);
|
||||
}
|
||||
|
||||
Assert.assertFalse(inf.contains(b,Q,a));
|
||||
Assert.assertTrue(inf.contains(b,OWL.sameAs,a));
|
||||
Assert.assertTrue(inf.contains(b,P,b));
|
||||
Assert.assertFalse(inf.contains(a,Q,a));
|
||||
|
||||
simpleReasonerTBoxListener.setStopRequested();
|
||||
}
|
||||
|
||||
|
||||
/*
|
||||
* Basic scenario around recomputing the ABox inferences
|
||||
*/
|
||||
|
|
|
|||
Loading…
Add table
Reference in a new issue