Merge branch 'develop' into feature/fauxEditing
This commit is contained in:
Jim Blake
commit
681219da72
8 changed files with 280 additions and 164 deletions
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@ -28,13 +28,12 @@ import com.hp.hpl.jena.rdf.model.Resource;
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import com.hp.hpl.jena.rdf.model.Statement;
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import com.hp.hpl.jena.rdf.model.StmtIterator;
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import com.hp.hpl.jena.rdf.model.impl.Util;
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import com.hp.hpl.jena.sdb.util.Pair;
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import com.hp.hpl.jena.shared.Lock;
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import com.hp.hpl.jena.vocabulary.OWL;
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import edu.cornell.mannlib.vitro.webapp.beans.BaseResourceBean.RoleLevel;
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import edu.cornell.mannlib.vitro.webapp.beans.ObjectProperty;
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import edu.cornell.mannlib.vitro.webapp.beans.Property;
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import edu.cornell.mannlib.vitro.webapp.dao.PropertyDao.FullPropertyKey;
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import edu.cornell.mannlib.vitro.webapp.dao.VitroVocabulary;
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import edu.cornell.mannlib.vitro.webapp.modelaccess.ModelAccess;
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import edu.cornell.mannlib.vitro.webapp.startup.StartupStatus;
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@ -111,12 +110,12 @@ public class PropertyRestrictionPolicyHelper {
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Model displayModel) {
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Map<Pair<String, Pair<String,String>>, RoleLevel> displayThresholdMap =
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new HashMap<Pair<String, Pair<String,String>>, RoleLevel>();
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Map<Pair<String, Pair<String,String>>, RoleLevel> modifyThresholdMap =
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new HashMap<Pair<String, Pair<String,String>>, RoleLevel>();
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Map<Pair<String, Pair<String,String>>, RoleLevel> publishThresholdMap =
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new HashMap<Pair<String, Pair<String,String>>, RoleLevel>();
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Map<FullPropertyKey, RoleLevel> displayThresholdMap =
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new HashMap<FullPropertyKey, RoleLevel>();
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Map<FullPropertyKey, RoleLevel> modifyThresholdMap =
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new HashMap<FullPropertyKey, RoleLevel>();
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Map<FullPropertyKey, RoleLevel> publishThresholdMap =
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new HashMap<FullPropertyKey, RoleLevel>();
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OntModel union = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM,
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ModelFactory.createUnion(displayModel, model));
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@ -140,40 +139,25 @@ public class PropertyRestrictionPolicyHelper {
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return getThreshold(property, modifyThresholdMap);
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}
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private RoleLevel getThreshold(Property property,
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Map<Pair<String, Pair<String,String>>, RoleLevel>
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thresholdMap) {
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private RoleLevel getThreshold(Property property,
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Map<FullPropertyKey, RoleLevel> thresholdMap) {
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if (property.getURI() == null) {
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return RoleLevel.NOBODY;
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}
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RoleLevel roleLevel = getRoleLevelFromMap(
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property.getDomainVClassURI(), property.getURI(),
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property.getRangeVClassURI(), thresholdMap);
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if (roleLevel == null) {
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roleLevel = getRoleLevelFromMap(
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OWL.Thing.getURI(), property.getURI(), OWL.Thing.getURI(),
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thresholdMap);
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}
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RoleLevel roleLevel = thresholdMap.get(new FullPropertyKey(property));
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if (roleLevel == null) {
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roleLevel = thresholdMap
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.get(new FullPropertyKey(property.getURI()));
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}
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return roleLevel;
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}
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private RoleLevel getRoleLevelFromMap(String domainURI,
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String predicateURI,
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String rangeURI,
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Map<Pair<String, Pair<String,String>>,
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RoleLevel> map) {
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return map.get(
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new Pair<String, Pair<String,String>>(
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domainURI, new Pair<String,String>(
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predicateURI, rangeURI)));
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}
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/**
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* Find all the resources that possess this property, and map the resource
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* URI to the required RoleLevel.
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*/
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private static void populateThresholdMap(OntModel model,
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Map<Pair<String,Pair<String,String>>, RoleLevel> map, String propertyUri) {
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Map<FullPropertyKey, RoleLevel> map, String propertyUri) {
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model.enterCriticalSection(Lock.READ);
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try {
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com.hp.hpl.jena.rdf.model.Property property = model.getProperty(propertyUri);
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@ -189,9 +173,7 @@ public class PropertyRestrictionPolicyHelper {
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}
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Resource object = (Resource) objectNode;
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RoleLevel role = RoleLevel.getRoleByUri(object.getURI());
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map.put(new Pair<String,Pair<String,String>>(
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OWL.Thing.getURI(), new Pair<String,String>(
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subject.getURI(), OWL.Thing.getURI())), role);
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map.put(new FullPropertyKey(subject.getURI()), role);
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}
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} finally {
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stmts.close();
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@ -211,12 +193,9 @@ public class PropertyRestrictionPolicyHelper {
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role = faux.getHiddenFromPublishBelowRoleLevel();
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}
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if (role != null) {
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log.debug("Putting D:" + faux.getDomainVClassURI() + " P:"
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+ faux.getURI() + " R:" + faux.getRangeVClassURI()
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+ " ==> L:" + role);
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map.put(new Pair<String,Pair<String,String>>(
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faux.getDomainVClassURI(), new Pair<String,String>(
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faux.getURI(), faux.getRangeVClassURI())), role);
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FullPropertyKey key = new FullPropertyKey(faux);
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map.put(key, role);
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log.debug("Putting key: " + key + " ==> L:" + role);
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}
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}
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@ -245,19 +224,19 @@ public class PropertyRestrictionPolicyHelper {
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* These URIs can be displayed only if the user's role is at least as high
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* as the threshold role.
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*/
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private final Map<Pair<String, Pair<String,String>>, RoleLevel> displayThresholdMap;
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private final Map<FullPropertyKey, RoleLevel> displayThresholdMap;
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/**
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* These URIs can be modified only if the user's role is at least as high as
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* the threshold role.
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*/
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private final Map<Pair<String, Pair<String,String>>, RoleLevel> modifyThresholdMap;
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private final Map<FullPropertyKey, RoleLevel> modifyThresholdMap;
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/**
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* These URIs can be published only if the user's role is at least as high as
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* the threshold role.
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*/
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private final Map<Pair<String, Pair<String,String>>, RoleLevel> publishThresholdMap;
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private final Map<FullPropertyKey, RoleLevel> publishThresholdMap;
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/**
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@ -269,9 +248,9 @@ public class PropertyRestrictionPolicyHelper {
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protected PropertyRestrictionPolicyHelper(
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Collection<String> modifyProhibitedNamespaces,
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Collection<String> modifyExceptionsAllowedUris,
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Map<Pair<String, Pair<String,String>>, RoleLevel> displayThresholdMap,
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Map<Pair<String, Pair<String,String>>, RoleLevel> modifyThresholdMap,
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Map<Pair<String, Pair<String,String>>, RoleLevel> publishThresholdMap) {
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Map<FullPropertyKey, RoleLevel> displayThresholdMap,
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Map<FullPropertyKey, RoleLevel> modifyThresholdMap,
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Map<FullPropertyKey, RoleLevel> publishThresholdMap) {
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this.modifyProhibitedNamespaces = unmodifiable(modifyProhibitedNamespaces);
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this.modifyExceptionsAllowedUris = unmodifiable(modifyExceptionsAllowedUris);
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this.displayThresholdMap = displayThresholdMap;
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@ -3,46 +3,140 @@
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package edu.cornell.mannlib.vitro.webapp.dao;
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import java.util.List;
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import java.util.Objects;
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import com.hp.hpl.jena.vocabulary.OWL;
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import edu.cornell.mannlib.vitro.webapp.beans.Property;
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import edu.cornell.mannlib.vitro.webapp.beans.VClass;
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public interface PropertyDao {
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void addSuperproperty(Property property, Property superproperty);
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void addSuperproperty(String propertyURI, String superpropertyURI);
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void removeSuperproperty(Property property, Property superproperty);
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void removeSuperproperty(String propertyURI, String superpropertyURI);
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void addSubproperty(Property property, Property subproperty);
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void addSubproperty(String propertyURI, String subpropertyURI);
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void removeSubproperty(Property property, Property subproperty);
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void removeSubproperty(String propertyURI, String subpropertyURI);
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void addEquivalentProperty(String propertyURI, String equivalentPropertyURI);
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void addEquivalentProperty(Property property, Property equivalentProperty);
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void removeEquivalentProperty(String propertyURI, String equivalentPropertyURI);
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void removeEquivalentProperty(Property property, Property equivalentProperty);
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List <String> getSubPropertyURIs(String propertyURI);
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List <String> getAllSubPropertyURIs(String propertyURI);
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void addSuperproperty(Property property, Property superproperty);
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List <String> getSuperPropertyURIs(String propertyURI, boolean direct);
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void addSuperproperty(String propertyURI, String superpropertyURI);
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List <String> getAllSuperPropertyURIs(String propertyURI);
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List <String> getEquivalentPropertyURIs(String propertyURI);
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List <VClass> getClassesWithRestrictionOnProperty(String propertyURI);
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void removeSuperproperty(Property property, Property superproperty);
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void removeSuperproperty(String propertyURI, String superpropertyURI);
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void addSubproperty(Property property, Property subproperty);
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void addSubproperty(String propertyURI, String subpropertyURI);
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void removeSubproperty(Property property, Property subproperty);
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void removeSubproperty(String propertyURI, String subpropertyURI);
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void addEquivalentProperty(String propertyURI, String equivalentPropertyURI);
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void addEquivalentProperty(Property property, Property equivalentProperty);
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void removeEquivalentProperty(String propertyURI,
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String equivalentPropertyURI);
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void removeEquivalentProperty(Property property, Property equivalentProperty);
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List<String> getSubPropertyURIs(String propertyURI);
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List<String> getAllSubPropertyURIs(String propertyURI);
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List<String> getSuperPropertyURIs(String propertyURI, boolean direct);
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List<String> getAllSuperPropertyURIs(String propertyURI);
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List<String> getEquivalentPropertyURIs(String propertyURI);
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List<VClass> getClassesWithRestrictionOnProperty(String propertyURI);
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/**
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* An immutable key class for making maps of properties and faux properties.
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*
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* The property URI is a significant part of the key, of course, but the
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* range and domain URIs are significant also.
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*
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* If the range or domain URI is not provided, it is assumed to be
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* OWL:Thing.
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*/
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public static class FullPropertyKey {
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private static final String OWL_THING = OWL.Thing.getURI();
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private final String domainUri;
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private final String propertyUri;
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private final String rangeUri;
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private final int hash;
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private final String string;
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public FullPropertyKey(String uri) {
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this(OWL_THING, uri, OWL_THING);
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}
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public FullPropertyKey(Property prop) {
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this(prop.getDomainVClassURI(), prop.getURI(), prop
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.getRangeVClassURI());
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}
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public FullPropertyKey(String domainUri, String propertyUri,
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String rangeUri) {
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this.propertyUri = Objects.requireNonNull(propertyUri,
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"propertyUri may not be null.");
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this.domainUri = (domainUri == null) ? OWL_THING : domainUri;
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this.rangeUri = (rangeUri == null) ? OWL_THING : rangeUri;
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this.hash = calculateHash();
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this.string = calculateString();
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}
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private int calculateHash() {
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return Objects
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.hash(this.domainUri, this.propertyUri, this.rangeUri);
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}
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private String calculateString() {
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return "FullPropertyKey[domainUri=" + this.domainUri
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+ ", propertyUri=" + this.propertyUri + ", rangeUri="
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+ this.rangeUri + "]";
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}
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public String getDomainUri() {
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return domainUri;
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}
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public String getPropertyUri() {
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return propertyUri;
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}
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public String getRangeUri() {
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return rangeUri;
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}
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@Override
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public int hashCode() {
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return hash;
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}
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@Override
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public boolean equals(Object obj) {
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if (this == obj) {
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return true;
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}
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if (obj == null) {
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return false;
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}
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if (getClass() != obj.getClass()) {
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return false;
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}
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FullPropertyKey that = (FullPropertyKey) obj;
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return Objects.equals(this.domainUri, that.domainUri)
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&& Objects.equals(this.propertyUri, that.propertyUri)
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&& Objects.equals(this.rangeUri, that.rangeUri);
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}
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@Override
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public String toString() {
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return string;
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}
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}
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}
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@ -34,7 +34,6 @@ import com.hp.hpl.jena.rdf.model.Resource;
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import com.hp.hpl.jena.rdf.model.ResourceFactory;
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import com.hp.hpl.jena.rdf.model.Statement;
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import com.hp.hpl.jena.rdf.model.StmtIterator;
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import com.hp.hpl.jena.sdb.util.Pair;
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import com.hp.hpl.jena.shared.Lock;
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import com.hp.hpl.jena.vocabulary.OWL;
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import com.hp.hpl.jena.vocabulary.RDFS;
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@ -100,7 +99,8 @@ public class PropertyDaoJena extends JenaBaseDao implements PropertyDao {
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addSuperproperty(property.getURI(),superproperty.getURI());
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}
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public void addSuperproperty(String propertyURI, String superpropertyURI) {
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@Override
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public void addSuperproperty(String propertyURI, String superpropertyURI) {
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getOntModel().enterCriticalSection(Lock.WRITE);
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try {
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getOntModel().add(getOntModel().getResource(propertyURI),RDFS.subPropertyOf,getOntModel().getResource(superpropertyURI));
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@ -113,6 +113,7 @@ public class PropertyDaoJena extends JenaBaseDao implements PropertyDao {
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removeSuperproperty(property.getURI(),superproperty.getURI());
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}
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@Override
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public void removeSuperproperty(String propertyURI, String superpropertyURI) {
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getOntModel().enterCriticalSection(Lock.WRITE);
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try {
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@ -128,6 +129,7 @@ public class PropertyDaoJena extends JenaBaseDao implements PropertyDao {
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addSuperproperty(subproperty, property);
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}
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@Override
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public void addSubproperty(String propertyURI, String subpropertyURI) {
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addSuperproperty(subpropertyURI, propertyURI);
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}
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@ -136,10 +138,12 @@ public class PropertyDaoJena extends JenaBaseDao implements PropertyDao {
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removeSuperproperty(subproperty, property);
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}
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@Override
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public void removeSubproperty(String propertyURI, String subpropertyURI) {
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removeSuperproperty(subpropertyURI,propertyURI);
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}
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@Override
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public List <String> getSubPropertyURIs(String propertyURI) {
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List<String> subURIs = new LinkedList<String>();
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getOntModel().enterCriticalSection(Lock.READ);
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@ -171,6 +175,7 @@ public class PropertyDaoJena extends JenaBaseDao implements PropertyDao {
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}
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}
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@Override
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public List<String> getAllSubPropertyURIs(String propertyURI) {
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HashSet<String> nodeSet = new HashSet<String>();
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nodeSet.add(propertyURI);
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@ -181,6 +186,7 @@ public class PropertyDaoJena extends JenaBaseDao implements PropertyDao {
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return outputList;
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}
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@Override
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public List <String> getSuperPropertyURIs(String propertyURI, boolean direct) {
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List<String> supURIs = new LinkedList<String>();
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getOntModel().enterCriticalSection(Lock.READ);
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@ -212,6 +218,7 @@ public class PropertyDaoJena extends JenaBaseDao implements PropertyDao {
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}
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}
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@Override
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public List<String> getAllSuperPropertyURIs(String propertyURI) {
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HashSet<String> nodeSet = new HashSet<String>();
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nodeSet.add(propertyURI);
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@ -222,22 +229,27 @@ public class PropertyDaoJena extends JenaBaseDao implements PropertyDao {
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return outputList;
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}
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@Override
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public void addSubproperty(Property property, Property subproperty) {
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addSubproperty(property.getURI(), subproperty.getURI());
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}
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@Override
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public void addSuperproperty(Property property, Property superproperty) {
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addSuperproperty(property.getURI(), superproperty.getURI());
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}
|
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@Override
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public void removeSubproperty(Property property, Property subproperty) {
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removeSubproperty(property.getURI(), subproperty.getURI());
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}
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@Override
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public void removeSuperproperty(Property property, Property superproperty) {
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removeSuperproperty(property.getURI(), superproperty.getURI());
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}
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@Override
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public void addEquivalentProperty(String propertyURI,
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String equivalentPropertyURI) {
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if (propertyURI == null || equivalentPropertyURI == null) {
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@ -255,11 +267,13 @@ public class PropertyDaoJena extends JenaBaseDao implements PropertyDao {
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}
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}
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@Override
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public void addEquivalentProperty(Property property,
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Property equivalentProperty) {
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addEquivalentProperty(property.getURI(), equivalentProperty.getURI());
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}
|
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@Override
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public List<String> getEquivalentPropertyURIs(String propertyURI) {
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List<String> equivURIs = new LinkedList<String>();
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getOntModel().enterCriticalSection(Lock.READ);
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|
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@ -280,6 +294,7 @@ public class PropertyDaoJena extends JenaBaseDao implements PropertyDao {
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return equivURIs;
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}
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@Override
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public void removeEquivalentProperty(String propertyURI, String equivalentPropertyURI) {
|
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if (propertyURI == null || equivalentPropertyURI == null) {
|
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throw new RuntimeException("cannot remove equivalence axiom about anonymous properties");
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|
|
@ -296,6 +311,7 @@ public class PropertyDaoJena extends JenaBaseDao implements PropertyDao {
|
|||
}
|
||||
}
|
||||
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@Override
|
||||
public void removeEquivalentProperty(Property property,
|
||||
Property equivalentProperty) {
|
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removeEquivalentProperty(property, equivalentProperty);
|
||||
|
|
@ -337,7 +353,8 @@ public class PropertyDaoJena extends JenaBaseDao implements PropertyDao {
|
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* definitions involving a restriction on the given property.
|
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*/
|
||||
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||||
public List <VClass> getClassesWithRestrictionOnProperty(String propertyURI) {
|
||||
@Override
|
||||
public List<VClass> getClassesWithRestrictionOnProperty(String propertyURI) {
|
||||
|
||||
if (propertyURI == null) {
|
||||
log.warn("getClassesWithRestrictionOnProperty: called with null propertyURI");
|
||||
|
|
@ -555,6 +572,7 @@ public class PropertyDaoJena extends JenaBaseDao implements PropertyDao {
|
|||
public VClassHierarchyRanker(VClassDao vcDao) {
|
||||
this.vcDao = vcDao;
|
||||
}
|
||||
@Override
|
||||
public int compare(VClass vc1, VClass vc2) {
|
||||
if (vcDao.isSubClassOf(vc1, vc2)) {
|
||||
return -1;
|
||||
|
|
@ -779,21 +797,19 @@ public class PropertyDaoJena extends JenaBaseDao implements PropertyDao {
|
|||
: op.getRange();
|
||||
Resource domainRes = op.getDomain();
|
||||
propInsts.add(getPropInst(op, domainRes, rangeRes));
|
||||
List<Pair<String,String>> additionalFauxSubpropertyDomainAndRangeURIs =
|
||||
getAdditionalFauxSubpropertyDomainAndRangeURIsForPropertyURI(
|
||||
propertyURI);
|
||||
for (Pair<String,String> domainAndRangeURIs :
|
||||
additionalFauxSubpropertyDomainAndRangeURIs) {
|
||||
List<FullPropertyKey> additionalFauxSubpropertyKeys =
|
||||
getAdditionalFauxSubpropertyKeysForPropertyURI(propertyURI);
|
||||
for (FullPropertyKey fauxSubpropertyKey : additionalFauxSubpropertyKeys) {
|
||||
boolean applicablePropInst = false;
|
||||
if (rangeRes == null ||
|
||||
!getWebappDaoFactory().getVClassDao().isSubClassOf(
|
||||
rangeRes.getURI(), domainAndRangeURIs.getRight())) {
|
||||
if (domainAndRangeURIs.getLeft() == null) {
|
||||
rangeRes.getURI(), fauxSubpropertyKey.getRangeUri())) {
|
||||
if (fauxSubpropertyKey.getDomainUri() == null) {
|
||||
applicablePropInst = true;
|
||||
} else {
|
||||
for(VClass vclass : vclasses) {
|
||||
if (vclass.getURI() != null && vclass.getURI().equals(
|
||||
domainAndRangeURIs.getLeft())) {
|
||||
fauxSubpropertyKey.getDomainUri())) {
|
||||
applicablePropInst = true;
|
||||
break;
|
||||
}
|
||||
|
|
@ -802,8 +818,8 @@ public class PropertyDaoJena extends JenaBaseDao implements PropertyDao {
|
|||
if (applicablePropInst) {
|
||||
propInsts.add(getPropInst(
|
||||
op,
|
||||
ResourceFactory.createResource(domainAndRangeURIs.getLeft()),
|
||||
ResourceFactory.createResource(domainAndRangeURIs.getRight())
|
||||
ResourceFactory.createResource(fauxSubpropertyKey.getDomainUri()),
|
||||
ResourceFactory.createResource(fauxSubpropertyKey.getRangeUri())
|
||||
));
|
||||
}
|
||||
}
|
||||
|
|
@ -938,8 +954,8 @@ public class PropertyDaoJena extends JenaBaseDao implements PropertyDao {
|
|||
return opList;
|
||||
}
|
||||
|
||||
private List<Pair<String,String>> getAdditionalFauxSubpropertyDomainAndRangeURIsForPropertyURI(String propertyURI) {
|
||||
List<Pair<String,String>> domainAndRangeURIs = new ArrayList<Pair<String,String>>();
|
||||
private List<FullPropertyKey> getAdditionalFauxSubpropertyKeysForPropertyURI(String propertyURI) {
|
||||
List<FullPropertyKey> keys = new ArrayList<>();
|
||||
String propQuery = "PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> \n" +
|
||||
"PREFIX config: <http://vitro.mannlib.cornell.edu/ns/vitro/ApplicationConfiguration#> \n" +
|
||||
"PREFIX vitro: <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#> \n" +
|
||||
|
|
@ -962,12 +978,12 @@ public class PropertyDaoJena extends JenaBaseDao implements PropertyDao {
|
|||
if (domainRes != null && !domainRes.isAnon()) {
|
||||
domainURI = domainRes.getURI();
|
||||
}
|
||||
domainAndRangeURIs.add(new Pair<String,String>(domainURI, rangeURI));
|
||||
keys.add(new FullPropertyKey(domainURI, propertyURI, rangeURI));
|
||||
}
|
||||
} finally {
|
||||
qe.close();
|
||||
}
|
||||
return domainAndRangeURIs;
|
||||
return keys;
|
||||
}
|
||||
|
||||
|
||||
|
|
|
|||
|
|
@ -84,6 +84,10 @@ public class AutocompleteController extends VitroAjaxController {
|
|||
hasMultipleTypes = true;
|
||||
}
|
||||
}
|
||||
} else {
|
||||
//if the type parameter is null, no range is specified and individuals of any class might be returned
|
||||
//in this case, it would be useful to show the most specific type of the individual
|
||||
hasMultipleTypes = true;
|
||||
}
|
||||
|
||||
SearchQuery query = getQuery(qtxt, vreq);
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue