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Merge branch 'develop' of https://github.com/vivo-project/Vitro into develop

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Conflicts:
	webapp/rdf/display/everytime/pageList.n3
This commit is contained in:
hudajkhan 2013-10-07 17:34:19 -04:00
commit 6be63135d4
6 changed files with 395 additions and 250 deletions
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3
webapp/rdf/display/everytime/dataGetterLabels.n3
View file

@ -2,6 +2,9 @@
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
#Data getter type labels
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
<java:edu.cornell.mannlib.vitro.webapp.utils.dataGetter.ClassGroupPageData> rdfs:label "Class Group Page" .
<java:edu.cornell.mannlib.vitro.webapp.utils.dataGetter.BrowseDataGetter> rdfs:label "Browse Page" .
<java:edu.cornell.mannlib.vitro.webapp.utils.dataGetter.IndividualsForClassesDataGetter> rdfs:label "Class Group Page - Selected Classes" .

8
webapp/src/edu/cornell/mannlib/vitro/webapp/controller/VitroRequest.java
View file

@ -215,5 +215,11 @@ public class VitroRequest extends HttpServletRequestWrapper {
return (OntModel) getAttribute("languageNeutralUnionFullModel");
}
public void setLanguageNeutralWebappDaoFactory(WebappDaoFactory wadf) {
setAttribute("languageNeutralWebappDaoFactory", wadf);
}
public WebappDaoFactory getLanguageNeutralWebappDaoFactory() {
return (WebappDaoFactory) getAttribute("languageNeutralWebappDaoFactory");
}
}

28
webapp/src/edu/cornell/mannlib/vitro/webapp/filters/RequestModelsPrep.java
View file

@ -42,6 +42,8 @@ import edu.cornell.mannlib.vitro.webapp.dao.WebappDaoFactory;
import edu.cornell.mannlib.vitro.webapp.dao.WebappDaoFactoryConfig;
import edu.cornell.mannlib.vitro.webapp.dao.filtering.WebappDaoFactoryFiltering;
import edu.cornell.mannlib.vitro.webapp.dao.filtering.filters.HideFromDisplayByPolicyFilter;
import edu.cornell.mannlib.vitro.webapp.dao.jena.OntModelSelector;
import edu.cornell.mannlib.vitro.webapp.dao.jena.OntModelSelectorImpl;
import edu.cornell.mannlib.vitro.webapp.dao.jena.RDFServiceDataset;
import edu.cornell.mannlib.vitro.webapp.dao.jena.SpecialBulkUpdateHandlerGraph;
import edu.cornell.mannlib.vitro.webapp.dao.jena.WebappDaoFactorySDB;
@ -143,10 +145,13 @@ public class RequestModelsPrep implements Filter {
setRawModels(vreq, dataset);
// We need access to the language-ignorant version of this model.
// Grab it before it gets wrapped in language awareness.
// We need access to some language-neutral items - either because we need to see all
// contents regardless of language, or because we need to see the blank nodes that
// are removed during language filtering.
vreq.setLanguageNeutralUnionFullModel(ModelAccess.on(vreq).getOntModel(ModelID.UNION_FULL));
vreq.setLanguageNeutralWebappDaoFactory(new WebappDaoFactorySDB(
rdfService, createLanguageNeutralOntModelSelector(vreq), createWadfConfig(vreq)));
wrapModelsWithLanguageAwareness(vreq);
setWebappDaoFactories(vreq, rdfService);
@ -229,6 +234,19 @@ public class RequestModelsPrep implements Filter {
return ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM, unionModel);
}
/** Create an OntModelSelector that will hold the un-language-filtered models. */
private OntModelSelector createLanguageNeutralOntModelSelector(
VitroRequest vreq) {
OntModelSelectorImpl oms = new OntModelSelectorImpl();
oms.setABoxModel(ModelAccess.on(vreq).getOntModel(ModelID.UNION_ABOX));
oms.setTBoxModel(ModelAccess.on(vreq).getOntModel(ModelID.UNION_TBOX));
oms.setFullModel(ModelAccess.on(vreq).getOntModel(ModelID.UNION_FULL));
oms.setApplicationMetadataModel(ModelAccess.on(vreq).getOntModel(ModelID.APPLICATION_METADATA));
oms.setDisplayModel(ModelAccess.on(vreq).getOntModel(ModelID.DISPLAY));
oms.setUserAccountsModel(ModelAccess.on(vreq).getOntModel(ModelID.USER_ACCOUNTS));
return oms;
}
private void wrapModelsWithLanguageAwareness(VitroRequest vreq) {
wrapModelWithLanguageAwareness(vreq, ModelID.DISPLAY);
wrapModelWithLanguageAwareness(vreq, ModelID.APPLICATION_METADATA);
@ -271,6 +289,10 @@ public class RequestModelsPrep implements Filter {
// a different version if requested by parameters
WebappDaoFactory switchedWadf = new ModelSwitcher()
.checkForModelSwitching(vreq, wadf);
// Switch the language-neutral one also.
vreq.setLanguageNeutralWebappDaoFactory(new ModelSwitcher()
.checkForModelSwitching(vreq,
vreq.getLanguageNeutralWebappDaoFactory()));
HideFromDisplayByPolicyFilter filter = new HideFromDisplayByPolicyFilter(
RequestIdentifiers.getIdBundleForRequest(vreq),

428
webapp/src/edu/cornell/mannlib/vitro/webapp/search/indexing/AdditionalURIsForContextNodes.java
View file

@ -142,6 +142,9 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
+ " prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> \n"
+ " prefix core: <http://vivoweb.org/ontology/core#> \n"
+ " prefix foaf: <http://xmlns.com/foaf/0.1/> \n"
+ " prefix obo: <http://purl.obolibrary.org/obo/> \n"
+ " prefix vcard: <http://www.w3.org/2006/vcard/ns#> \n"
+ " prefix event: <http://purl.org/NET/c4dm/event.owl#> \n"
+ " prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> \n"
+ " prefix localNav: <http://vitro.mannlib.cornell.edu/ns/localnav#> \n"
+ " prefix bibo: <http://purl.org/ontology/bibo/> \n";
@ -151,30 +154,39 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
// If a person changes then update
// organizations for positions
multiValuedQueriesForAgent.add(prefix +
"SELECT \n" +
"SELECT DISTINCT \n" +
" (str(?i) as ?positionInOrganization) \n" +
" WHERE {\n"
+ "?uri rdf:type foaf:Agent ; ?b ?c . \n"
+ "?uri rdf:type foaf:Agent ; core:relatedBy ?c . \n"
+ " ?c rdf:type core:Position . \n"
+ " OPTIONAL { ?c core:positionInOrganization ?i . } . \n"
+ " OPTIONAL { ?c core:relates ?i . ?i rdf:type foaf:Organization } . \n"
+ " }");
// If a person changes then update
// advisee, linkedAuthor and informationResource
multiValuedQueriesForAgent.add(prefix +
"SELECT (str(?d) as ?advisee) \n" +
" (str(?f) as ?linkedAuthor) (str(?h) as ?linkedInformationResource) WHERE {\n"
" (str(?f) as ?linkedAuthor) (str(?h) as ?linkedInformationResource) WHERE { {\n"
+ "?uri rdf:type foaf:Agent ; ?b ?c . \n"
+ " ?c rdf:type core:Relationship . \n"
+ " OPTIONAL { ?c core:advisee ?d . } . \n"
+ " OPTIONAL { ?c core:linkedAuthor ?f . } . \n"
+ " OPTIONAL { ?c core:linkedInformationResource ?h . } . \n"
+ " } ");
+ "?uri rdf:type foaf:Agent . \n"
+ "?uri core:relatedBy ?c . \n"
+ "?c rdf:type core:AdvisingRelationship . \n"
+ "?c core:relates ?d . \n"
+ "?d rdf:type core:AdviseeRole . \n"
+ "?d obo:RO_0000052 ?e . \n"
+ "?e rdf:type foaf:Person . \n"
+ "} \n"
+ "UNION { \n"
+ " ?uri rdf:type foaf:Agent . \n"
+ " ?uri core:relatedBy ?c . \n"
+ " ?c rdf:type core:Authorship . \n"
+ " OPTIONAL {?c core:relates ?f . \n"
+ " ?f rdf:type foaf:Person . } \n"
+ " OPTIONAL { ?c core:relates ?h . \n"
+ " ?h rdf:type obo:IAO_0000030 . } \n"
+ " } } ");
// If a person changes then update
// award giver
@ -185,7 +197,7 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
+ "?uri rdf:type foaf:Agent ; ?b ?c . \n"
+ " ?c rdf:type core:AwardReceipt . \n"
+ " OPTIONAL { ?c core:awardConferredBy ?d . } . \n"
+ " OPTIONAL { ?c core:assignedBy ?d . } . \n"
+ " }");
// If a person changes then update
@ -195,7 +207,7 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
"WHERE {\n"
+ "?uri rdf:type foaf:Agent ; ?b ?c . \n"
+ " ?c rdf:type core:Role ; core:roleIn ?Organization .\n"
+ " ?c rdf:type obo:BFO_0000023 ; obo:BFO_0000054 ?Organization .\n"
+ " }");
// If a person changes then update
@ -205,12 +217,13 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
"(str(?e) as ?trainingAtOrganization) WHERE {\n"
+ " ?uri rdf:type foaf:Agent ; ?b ?c . \n"
+ " ?c rdf:type core:EducationalTraining . \n"
+ " ?c rdf:type core:EducationalProcess . \n"
+ " OPTIONAL { ?c core:trainingAtOrganization ?e . } . \n"
+ " OPTIONAL { ?c obo:RO_0000057 ?e . \n"
+ " ?e rdf:type foaf:Organization . } . "
+"}");
// If an organizatoin changes then update
// If an organization changes then update
// people in head of relations
multiValuedQueriesForAgent.add(
" # for organization, get leader \n" +
@ -218,14 +231,14 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
"SELECT \n" +
"(str(?e) as ?LeaderPerson ) WHERE {\n"
+ " ?uri rdf:type foaf:Agent ; ?b ?c . \n"
+ " ?uri rdf:type foaf:Agent . \n"
+ " ?uri core:contributingRole ?c . \n"
+ " ?c rdf:type core:LeaderRole . \n"
+ " OPTIONAL { ?c core:leaderRoleOf ?e . } . \n"
+ " OPTIONAL { ?c obo:RO_0000052 ?e . \n"
+ " ?e rdf:type foaf:Person . } . "
+"}");
}
//multivalued query for core:InformationResource
@ -233,21 +246,27 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
multiValuedQueryForInformationResource = prefix +
"SELECT (str(?b) as ?linkedAuthor) (str(?d) as ?linkedInformationResource) \n"
+ "(str(?e) as ?editor) \n" +
+ "(str(?f) as ?editor) \n" +
"(str(?i) as ?features) WHERE {\n"
+ " ?uri rdf:type core:InformationResource . \n"
+ " ?uri rdf:type obo:IAO_0000030 . \n"
+ "OPTIONAL { ?uri core:informationResourceInAuthorship ?a . ?a core:linkedAuthor ?b ; core:linkedInformationResource ?d .\n" +
"} . "
+ "OPTIONAL { ?uri bibo:editor ?e . } .\n"
+ " OPTIONAL { ?uri core:relatedBy ?a . \n"
+ " ?a rdf:type core:Authorship . \n"
+ " ?a core:relates ?b . ?b rdf:type foaf:Person .\n"
+ " ?a core:relates ?d . ?d rdf:type obo:IAO_0000030 .\n"
+ "} . "
+ " OPTIONAL { ?uri core:relatedBy ?e . \n"
+ " ?e rdf:type core:Editorship . \n"
+ " ?e core:relates ?f . ?f rdf:type foaf:Person .\n"
+ "} . "
+ " OPTIONAL { ?uri core:features ?i . } . \n"
+"}" ;
}
protected static List<String> queriesForAuthorship(){
List<String> queries = new ArrayList<String>();
@ -257,8 +276,9 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
+ "SELECT (str(?a) as ?infoResource) WHERE {\n"
+ " ?uri rdf:type foaf:Person . \n"
+ " ?uri core:authorInAuthorship ?aship .\n"
+ "OPTIONAL { ?aship core:linkedInformationResource ?a } .\n"
+ " ?uri core:relatedBy ?aship .\n"
+ " ?aship rdf:type core:Authorship .\n"
+ "OPTIONAL { ?aship core:relates ?a . ?a rdf:type obo:IAO_0000030 } .\n"
+"}" );
//get additional URIs of authors from information resource side
@ -266,9 +286,9 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
prefix
+ "SELECT (str(?a) as ?author ) WHERE {\n"
+ " ?uri rdf:type core:InformationResource . \n"
+ " ?uri core:informationResourceInAuthorship ?aship .\n"
+ "OPTIONAL { ?aship core:linkedAuthor ?a } .\n"
+ " ?uri rdf:type obo:IAO_0000030 . \n"
+ " ?uri core:relatedBy ?aship . ?aship rdf:type core:Authorship . \n"
+ "OPTIONAL { ?aship core:relates ?a . ?a rdf:type foaf:Person } .\n"
+"}" );
return queries;
}
@ -281,8 +301,9 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
prefix
+ "SELECT (str(?x) as ?individual) WHERE {\n"
+ " ?uri rdf:type core:URLLink . \n"
+ " ?uri core:webpageOf ?x .\n"
+ " ?i rdf:type vcard:Individual . \n"
+ " ?i vcard:hasURL ?uri . \n"
+ " ?i obo:ARG_2000029 ?x . \n"
+"}" );
return queries;
@ -302,8 +323,10 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
+ " SELECT (str(?person) as ?personUri) WHERE {\n"
+ " ?uri rdf:type core:AcademicDegree . \n"
+ " ?uri core:degreeOutcomeOf ?edTrainingNode .\n"
+ " ?edTrainingNode core:educationalTrainingOf ?person . \n"
+ " ?uri core:relatedBy ?awardedDegree .\n"
+ " ?awardedDegree rdf:type core:AwardedDegree .\n"
+ " ?awardedDegree core:relates ?person .\n"
+ " ?person rdf:type foaf:Person .\n"
+"}" );
//if the organization changes the person needs to be updated
@ -313,8 +336,10 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
+ " SELECT (str(?person) as ?personUri) WHERE {\n"
+ " ?uri rdf:type foaf:Organization . \n"
+ " ?uri core:organizationGrantingDegree ?edTrainingNode .\n"
+ " ?edTrainingNode core:educationalTrainingOf ?person . \n"
+ " ?uri obo:RO_0000056 ?edTrainingNode .\n"
+ " ?edTrainingNode rdf:type core:EducationalProcess . \n"
+ " ?edTrainingNode obo:RO_0000057 ?person . \n"
+ " ?person rdf:type foaf:Person ."
+"}" );
return queries;
}
@ -328,8 +353,10 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
+ " SELECT (str(?person) as ?personUri) WHERE {\n"
+ " ?uri rdf:type foaf:Organization . \n"
+ " ?uri core:organizationForPosition ?positionNode .\n"
+ " ?person core:personInPosition ?positionNode . \n"
+ " ?uri core:relatedBy ?positionNode .\n"
+ " ?positionNode rdf:type core:Position .\n"
+ " ?positionNode core:relates ?person . \n"
+ " ?person rdf:type foaf:Person .\n"
+"}" );
@ -339,8 +366,10 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
+ " SELECT (str(?org) as ?orgUri) WHERE {\n"
+ " ?uri rdf:type foaf:Person . \n"
+ " ?uri core:personInPosition ?positionNode .\n"
+ " ?org core:organizationForPosition ?positionNode . \n"
+ " ?uri core:relatedBy ?positionNode .\n"
+ " ?positionNode rdf:type core:Position .\n"
+ " ?positionNode core:relates ?org . \n"
+ " ?org rdf:type foaf:Organization .\n"
+"}" );
return queries;
}
@ -348,21 +377,28 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
static{
// core:AttendeeRole
// If the person changes, update the attendee role in organization
// core:AttendeeRole applies to events, not organizations; updating accordingly - tlw72
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?organization) \n " +
"WHERE {\n"
+ "?uri rdf:type foaf:Person ; ?b ?c . \n"
+ " ?c rdf:type core:AttendeeRole ; core:roleIn ?d .\n"
"SELECT (str(?d) as ?event) \n " +
"WHERE {\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ "?c rdf:type core:AttendeeRole . \n"
+ "?c obo:BFO_0000054 ?d . \n"
+ "?d rdf:type event:Event .\n"
+ " }");
// If the organization changes, update the attendee role of person
// core:AttendeeRole applies to events, not organizations; updating accordingly - tlw72
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Organization ; ?b ?c . \n"
+ " ?c rdf:type core:AttendeeRole ; core:roleOf ?d .\n"
+ "?uri rdf:type event:Event . \n"
+ "?uri obo:BFO_0000055 ?c . \n"
+ "?c rdf:type core:AttendeeRole . \n"
+ "?c obo:RO_0000052 ?d . \n"
+ "?d rdf:type foaf:Person .\n"
+ " }");
// core:ClinicalRole -- core:clinicalRoleOf
@ -370,49 +406,68 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
// If the person changes, update the clinical role in project
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?project) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person ; ?b ?c . \n"
+ " ?c rdf:type core:ClinicalRole ; core:roleIn ?d .\n"
"WHERE {\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ "?c rdf:type core:ClinicalRole . \n"
+ "?c obo:BFO_0000054 ?d .\n"
+ "?d rdf:type core:Project .\n"
+ " }");
// If the person changes, update the clinical role in service
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?service) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ "?c rdf:type core:ClinicalRole . \n"
+ "?c core:roleContributesTo ?d .\n"
+ "?d rdf:type obo:ERO_0000005 .\n"
+ " }");
// If the project changes, update the clinical role of person
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type core:Project ; ?b ?c . \n"
+ " ?c rdf:type core:ClinicalRole ; core:clinicalRoleOf ?d .\n "
+ "?uri rdf:type core:Project . \n"
+ "?uri obo:BFO_0000055 ?c . \n"
+ "?c rdf:type core:ClinicalRole . \n"
+ "?c obo:RO_0000052 ?d .\n "
+ "?d rdf:type foaf:Person .\n "
+ " }");
// If the service changes, update the clinical role of person
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type core:Service ; ?b ?c . \n"
+ " ?c rdf:type core:ClinicalRole ; core:clinicalRoleOf ?d .\n "
"WHERE {\n"
+ "?uri rdf:type obo:ERO_0000005 . \n"
+ "?uri core:contributingRole ?c . \n"
+ "?c rdf:type core:ClinicalRole . \n"
+ "?c obo:RO_0000052 ?d .\n "
+ "?d rdf:type foaf:Person .\n "
+ " }");
// core:LeaderRole -- core:leaderRoleOf
// If the person changes, update the leader role in organization
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?organization) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person ; ?b ?c . \n"
+ " ?c rdf:type core:LeaderRole ; core:roleIn ?d .\n"
"WHERE {\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ "?c rdf:type core:LeaderRole . \n"
+ "?c core:roleContributesTo ?d .\n"
+ "?d rdf:type foaf:Organization .\n "
+ " }");
// If the organization changes, update the leader role of person
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Organization ; ?b ?c . \n"
+ " ?c rdf:type core:LeaderRole ; core:leaderRoleOf ?d .\n"
"WHERE {\n"
+ "?uri rdf:type foaf:Organization . \n"
+ "?uri core:contributingRole ?c . \n"
+ "?c rdf:type core:LeaderRole . \n"
+ "?c obo:RO_0000052 ?d .\n "
+ "?d rdf:type foaf:Person .\n "
+ " }");
// core:MemberRole -- core:memberRoleOf
@ -421,115 +476,142 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?organization) \n" +
"WHERE \n{"
+ "?uri rdf:type foaf:Person ; ?b ?c . \n"
+ " ?c rdf:type core:MemberRole ; core:roleIn ?d .\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ "?c rdf:type core:MemberRole . \n"
+ "?c core:roleContributesTo ?d .\n"
+ "?d rdf:type foaf:Organization .\n "
+ " }");
// If the organization changes, update the member role of person
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {"
+ "?uri rdf:type foaf:Organization ; ?b ?c . \n"
+ " ?c rdf:type core:MemberRole ; core:memberRoleOf ?d .\n"
+ "?uri rdf:type foaf:Organization . \n"
+ "?uri core:contributingRole ?c . \n"
+ "?c rdf:type core:MemberRole . \n"
+ "?c obo:RO_0000052 ?d .\n "
+ "?d rdf:type foaf:Person .\n "
+ " }");
// core:OrganizerRole -- core:organizerRoleOf
// If the person changes, update the organizer role in organization
// organizerRole appplies to events not organizations; updating accordingly - tlw72
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?organization) \n" +
"SELECT (str(?d) as ?event) \n" +
"WHERE {"
+ "?uri rdf:type foaf:Person ; ?b ?c . \n"
+ " ?c rdf:type core:OrganizerRole ; core:roleIn ?d .\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ "?c rdf:type core:OrganizerRole .\n"
+ "?c obo:BFO_0000054 ?d .\n"
+ "?d rdf:type event:Event .\n "
+ " }");
// If the organization changes, update the organizer role of person
// organizerRole appplies to events not organizations; updating accordingly - tlw72
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Organization ; ?b ?c . \n"
+ " ?c rdf:type core:OrganizerRole ; core:organizerRoleOf ?d .\n"
+ "?uri rdf:type event:Event . \n"
+ "?uri obo:BFO_0000055 ?c . \n"
+ "?c rdf:type core:OrganizerRole . \n"
+ "?c obo:RO_0000052 ?d .\n "
+ "?d rdf:type foaf:Person .\n "
+ " }");
// core:OutreachProviderRole -- core:outreachProviderRoleOf
// If the person changes, update the outreach provider role in organization
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?organization) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person ; ?b ?c . \n"
+ " ?c rdf:type core:OutreachProviderRole ; core:roleIn ?d .\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ "?c rdf:type core:OutreachProviderRole .\n"
+ "?c core:roleContributesTo ?d .\n"
+ "?d rdf:type foaf:Organization .\n "
+ " }");
// If the organization changes, update the outreach provider role of person
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Organization ; ?b ?c . \n"
+ " ?c rdf:type core:OutreachProviderRole ; core:outreachProviderRoleOf ?d .\n"
+ "?uri rdf:type foaf:Organization . \n"
+ "?uri core:contributingRole ?c . \n"
+ "?c rdf:type core:OutreachProviderRole . \n"
+ "?c obo:RO_0000052 ?d .\n "
+ "?d rdf:type foaf:Person .\n "
+ " }");
// core:PresenterRole -- core:presenterRoleOf
// If the person changes, update the presentation
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?organization) \n" +
"SELECT (str(?d) as ?presentation) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person ; ?b ?c . \n"
+ " ?c rdf:type core:PresenterRole ; core:roleIn ?d .\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ " ?c rdf:type core:PresenterRole . \n"
+ " ?c obo:BFO_0000054 ?d .\n"
+ " ?d rdf:type core:Presentation . \n"
+ " }");
// If the presentation changes, update the person
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type core:Presentation ; ?b ?c . \n"
+ " ?c rdf:type core:PresenterRole ; core:presenterRoleOf ?d .\n"
+ "?uri rdf:type core:Presentation . \n"
+ "?uri obo:BFO_0000055 ?c . \n"
+ " ?c rdf:type core:PresenterRole . \n "
+ "?c obo:RO_0000052 ?d .\n "
+ "?d rdf:type foaf:Person .\n "
+ " }");
// core:ResearcherRole -- core:researcherRoleOf
// If the person changes, update the grant
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?organization) \n" +
"SELECT (str(?d) as ?grant) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person ; ?b ?c . \n"
+ " ?c rdf:type core:ResearcherRole ; core:roleIn ?d .\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ " ?c rdf:type core:ResearcherRole . \n "
+ " ?c core:relatedBy ?d .\n"
+ " ?d rdf:type core:Grant . \n"
+ " }");
// If the grant changes, update the researcher
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type core:Grant ; ?b ?c . \n"
+ " ?c rdf:type core:ResearcherRole ; core:researcherRoleOf ?d .\n"
+ "?uri rdf:type core:Grant . \n"
+ "?uri core:relates ?c . \n"
+ " ?c rdf:type core:ResearcherRole . \n "
+ " ?c obo:RO_0000052 ?d .\n"
+ "?d rdf:type foaf:Person .\n "
+ " }");
// If the grant changes, update the principal investigator
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type core:Grant ; ?b ?c . \n"
+ " ?c rdf:type core:PrincipalInvestigatorRole ; core:principalInvestigatorRoleOf ?d .\n"
+ "?uri rdf:type core:Grant . \n"
+ " ?uri core:relates ?c . \n"
+ " ?c rdf:type core:PrincipalInvestigatorRole . \n "
+ " ?c obo:RO_0000052 ?d .\n"
+ "?d rdf:type foaf:Person .\n "
+ " }");
// If the grant changes, update the co-principal investigator
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type core:Grant ; ?b ?c . \n"
+ " ?c rdf:type core:CoPrincipalInvestigatorRole ; core:co-PrincipalInvestigatorRoleOf ?d .\n"
+ "?uri rdf:type core:Grant . \n"
+ " ?uri core:relates ?c . \n"
+ " ?c rdf:type core:CoPrincipalInvestigatorRole . \n "
+ " ?c obo:RO_0000052 ?d .\n"
+ "?d rdf:type foaf:Person .\n "
+ " }");
@ -537,45 +619,65 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type core:Grant ; ?b ?c . \n"
+ " ?c rdf:type core:InvestigatorRole ; core:investigatorRoleOf ?d .\n"
+ "?uri rdf:type core:Grant . \n"
+ " ?uri core:relates ?c . \n"
+ " ?c rdf:type core:InvestigatorRole . \n "
+ " ?c obo:RO_0000052 ?d .\n"
+ "?d rdf:type foaf:Person .\n "
+ " }");
// If the person changes, update the project
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?project) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ " ?c rdf:type core:ResearcherRole . \n "
+ " ?c obo:BFO_0000054 ?d .\n"
+ " ?d rdf:type core:Project . \n"
+ " }");
// If the project changes, update the researcher
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type core:Project ; ?b ?c . \n"
+ " ?c rdf:type core:ResearcherRole ; core:researcherRoleOf ?d .\n"
+ " }");
+ "?uri rdf:type core:Project . \n"
+ " ?uri obo:BFO_0000055 ?c .\n"
+ " ?c rdf:type core:ResearcherRole . \n "
+ " ?c obo:RO_0000052 ?d .\n"
+ "?d rdf:type foaf:Person .\n "
+ " }");
// core:EditorRole -- core:editorRoleOf, core:forInformationResource (person, informationresource)
// If the person changes, update the editor role in organization
// If the person changes, update the editor role of the info resource
// changing foaf:Organization to info content entity. Org no longer applies here - tlw72
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?organization) \n" +
"SELECT (str(?d) as ?informationResource) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person ; ?b ?c . \n"
+ " ?c rdf:type core:EditorRole ; core:roleIn ?d .\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ " ?c rdf:type core:EditorRole . \n "
+ " ?c core:roleContributesTo ?d .\n"
+ "?d rdf:type obo:IAO_0000030 .\n "
+ " }");
// If the organization changes, update the editor role of person
// If the info respource changes, update the editor role of person
// changing foaf:Organization to info content entity. Org no longer applies here - tlw72
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Organization ; ?b ?c . \n"
+ " ?c rdf:type core:EditorRole ; core:editorRoleOf ?d .\n"
+ "?uri rdf:type obo:IAO_0000030 . \n"
+ "?uri core:contributingRole ?c . \n"
+ " ?c rdf:type core:EditorRole . \n "
+ " ?c obo:RO_0000052 ?d .\n"
+ "?d rdf:type foaf:Person .\n "
+ " }");
// Next two queries are covered by the previous two. Commenting them out - tlw72
// If the person changes, update the information resource associated with editor role
multiValuedQueriesForRole.add(prefix +
/* multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?informationResource) \n" +
"WHERE {\n"
@ -591,46 +693,56 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
+ "?uri rdf:type foaf:Organization ; ?b ?c . \n"
+ " ?c rdf:type core:EditorRole ; core:forInformationResource ?d .\n"
+ " }");
*/
// core:ServiceProviderRole -- core:serviceProviderRoleOf
// If the person changes, update the service provider role in organization
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?organization) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person ; ?b ?c . \n"
+ " ?c rdf:type core:ServiceProviderRole ; core:roleIn ?d .\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ " ?c rdf:type obo:ERO_0000012 . \n"
+ " ?c core:roleContributesTo ?d .\n"
+ " ?d rdf:type foaf:Organization .\n "
+ " }");
// If the organization changes, update the service provider role of person
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Organization ; ?b ?c . \n"
+ " ?c rdf:type core:ServiceProviderRole ; core:serviceProviderRoleOf ?d .\n"
+ "?uri rdf:type foaf:Organization . \n"
+ "?uri core:contributingRole ?c . \n"
+ " ?c rdf:type obo:ERO_0000012 . \n "
+ " ?c obo:RO_0000052 ?d .\n"
+ "?d rdf:type foaf:Person .\n "
+ " }");
// core:TeacherRole -- core:teacherRoleOf
// If the person changes, update the teacher role in organization
// updated to make this an Event (e.g., a course) not an organization - tlw72
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?organization) \n" +
"SELECT (str(?d) as ?event) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Person ; ?b ?c . \n"
+ " ?c rdf:type core:TeacherRole ; core:roleIn ?d .\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ " ?c rdf:type core:TeacherRole . \n"
+ " ?c obo:BFO_0000054 ?d .\n"
+ " ?d rdf:type event:Event .\n "
+ " }");
// If the organization changes, update the teacher role of person
// updated to make this an Event (e.g., a course) not an organization - tlw72
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?person) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Organization ; ?b ?c . \n"
+ " ?c rdf:type core:TeacherRole ; core:teacherRoleOf ?d .\n"
+ "?uri rdf:type event:Event . \n"
+ "?uri obo:BFO_0000055 ?c . \n"
+ " ?c rdf:type core:TeacherRole . \n "
+ " ?c obo:RO_0000052 ?d .\n"
+ "?d rdf:type foaf:Person .\n "
+ " }");
@ -638,7 +750,9 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
// core:PeerReviewerRole -- core:forInformationResource, core:reviewerRoleOf
// If the person changes, update the reviewer role in organization
multiValuedQueriesForRole.add(prefix +
// There is no relationship between a reviewerRole and an organization; commenting
// the next two queries out - tlw72
/* multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?organization) \n" +
"WHERE {\n"
@ -656,23 +770,27 @@ public class AdditionalURIsForContextNodes implements StatementToURIsToUpdate {
+ "?uri rdf:type foaf:Organization ; ?b ?c . \n"
+ " ?c rdf:type core:ReviewerRole ; core:reviewerRoleOf ?d .\n"
+ " }");
*/
// If the person changes, update the information resource associated with reviewer role
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?informationResource) \n " +
"WHERE {\n"
+ "?uri rdf:type foaf:Person ; ?b ?c . \n"
+ " ?c rdf:type core:ReviewerRole ; core:forInformationResource ?d .\n"
+ "?uri rdf:type foaf:Person . \n"
+ "?uri obo:RO_0000053 ?c . \n"
+ " ?c rdf:type core:ReviewerRole . \n"
+ " ?c core:roleContributesTo ?d .\n"
+ " ?d rdf:type obo:IAO_0000030 .\n "
+ " }");
// If the organization changes, update the information resource associated with reviewer role
multiValuedQueriesForRole.add(prefix +
"SELECT (str(?d) as ?informationResource) \n" +
"WHERE {\n"
+ "?uri rdf:type foaf:Organization ; ?b ?c . \n"
+ " ?c rdf:type core:ReviewerRole ; core:forInformationResource ?d .\n"
+ "?uri rdf:type obo:IAO_0000030 . \n"
+ "?uri core:contributingRole ?c . \n"
+ " ?c rdf:type core:ReviewerRole. \n "
+ " ?c obo:RO_0000052 ?d .\n"
+ "?d rdf:type foaf:Person .\n "
+ " }");
}

13
webapp/src/edu/cornell/mannlib/vitro/webapp/web/templatemodels/individual/GroupedPropertyList.java
View file

@ -20,7 +20,6 @@ import edu.cornell.mannlib.vitro.webapp.beans.PropertyGroup;
import edu.cornell.mannlib.vitro.webapp.beans.PropertyInstance;
import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.dao.DataPropertyDao;
import edu.cornell.mannlib.vitro.webapp.dao.ModelAccess;
import edu.cornell.mannlib.vitro.webapp.dao.ObjectPropertyDao;
import edu.cornell.mannlib.vitro.webapp.dao.PropertyGroupDao;
import edu.cornell.mannlib.vitro.webapp.dao.PropertyInstanceDao;
@ -159,7 +158,6 @@ public class GroupedPropertyList extends BaseTemplateModel {
}
}
@SuppressWarnings("unchecked")
protected void sort(List<Property> propertyList) {
try {
Collections.sort(propertyList, new PropertyRanker(vreq));
@ -177,14 +175,9 @@ public class GroupedPropertyList extends BaseTemplateModel {
// DataPropertyDao.getAllPossibleDatapropsForIndividual(). The comparable method for object properties
// is defined using PropertyInstance rather than ObjectProperty.
// Getting WebappDaoFactory from the session because we can't have the filtering
// that gets applied to the request. This breaks blank node structures in the
// restrictions that determine applicable properties.
WebappDaoFactory wadf = ModelAccess.on(vreq.getSession().getServletContext()).getWebappDaoFactory();
//Allowing model switching for display model
if(vreq.getAttribute("specialWriteModel") != null) {
wadf = ModelAccess.on(vreq).getWebappDaoFactory();
}
// Getting Language-neutral WebappDaoFactory because the language-filtering
// breaks blank node structures in the restrictions that determine applicable properties.
WebappDaoFactory wadf = vreq.getLanguageNeutralWebappDaoFactory();
PropertyInstanceDao piDao = wadf.getPropertyInstanceDao();
Collection<PropertyInstance> allPropInstColl = piDao

165
webapp/test/edu/cornell/mannlib/vitro/webapp/search/indexing/AdditionalURIsForContextNodesTest.java
View file

@ -20,7 +20,7 @@ public class AdditionalURIsForContextNodesTest {
@Test
public void testPositionChanges(){
String n3 =
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5423> <http://vivoweb.org/ontology/core#organizationForPosition> <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5431> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5423> <http://vivoweb.org/ontology/core#relatedBy> <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5431> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5423> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#AcademicDepartment> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5423> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Department> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5423> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
@ -33,8 +33,10 @@ public class AdditionalURIsForContextNodesTest {
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5431> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Position> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5431> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5431> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#FacultyPosition> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5431> <http://vivoweb.org/ontology/core#relates> <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5423> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5431> <http://vivoweb.org/ontology/core#relates> <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n932> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n932> <http://vivoweb.org/ontology/core#personInPosition> <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5431> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n932> <http://vivoweb.org/ontology/core#relatedBy> <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n5431> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n932> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#FacultyMember> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n932> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n932> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
@ -86,6 +88,7 @@ public class AdditionalURIsForContextNodesTest {
"@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> . \n" +
"@prefix core: <http://vivoweb.org/ontology/core#> . \n" +
"@prefix vivo: <http://vivo.library.cornell.edu/ns/0.1#> . \n" +
"@prefix obo: <http://purl.obolibrary.org/obo/> . \n" +
" " +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n2577> \n" +
" a owl:Thing , core:Role , core:LeaderRole ; \n" +
@ -94,14 +97,15 @@ public class AdditionalURIsForContextNodesTest {
" core:LeaderRole ; \n" +
" core:dateTimeInterval \n" +
" <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n2594> ; \n" +
" core:leaderRoleOf <http://vivo.scripps.edu/individual/n14979> ; \n" +
" core:roleIn <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n2592> . \n" +
" obo:RO_0000052 <http://vivo.scripps.edu/individual/n14979> ; \n" +
" core:roleContributesTo <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n2592> . \n" +
"<http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n2592> \n" +
" a <http://xmlns.com/foaf/0.1/Organization> , owl:Thing , <http://xmlns.com/foaf/0.1/Agent> , core:ClinicalOrganization ; \n" +
" rdfs:label \"Organization XYZ\"^^xsd:string ; \n" +
" vitro:mostSpecificType \n" +
" core:ClinicalOrganization ; \n" +
" core:relatedRole <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n2577> . \n";
" core:contributingRole <http://caruso-laptop.mannlib.cornell.edu:8090/vivo/individual/n2577> . \n" +
" <http://vivo.scripps.edu/individual/n14979> a <http://xmlns.com/foaf/0.1/Person> , owl:Thing , <http://xmlns.com/foaf/0.1/Agent> . \n";
//make a test model with an person, an authorship context node and a book
@ -124,32 +128,31 @@ public class AdditionalURIsForContextNodesTest {
String n3=
"<http://vivo.scripps.edu/individual/n2027> <http://www.w3.org/2000/01/rdf-schema#label> \"1, Test\" . \n " +
"<http://vivo.scripps.edu/individual/n2027> <http://xmlns.com/foaf/0.1/lastName> \"1\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n2027> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
// "<http://vivo.scripps.edu/individual/n2027> <http://xmlns.com/foaf/0.1/lastName> \"1\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
// "<http://vivo.scripps.edu/individual/n2027> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n2027> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n " +
"<http://vivo.scripps.edu/individual/n2027> <http://vivoweb.org/ontology/core#hasLeaderRole> <http://vivo.scripps.edu/individual/n7067> . \n " +
"<http://vivo.scripps.edu/individual/n2027> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n7067> . \n " +
"<http://vivo.scripps.edu/individual/n2027> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n " +
"<http://vivo.scripps.edu/individual/n2027> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n " +
"<http://vivo.scripps.edu/individual/n2027> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n7067> <http://www.w3.org/2000/01/rdf-schema#label> \"Leader Role\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n7067> <http://vivoweb.org/ontology/core#leaderRoleOf> <http://vivo.scripps.edu/individual/n2027> . \n " +
"<http://vivo.scripps.edu/individual/n7067> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n2027> . \n " +
"<http://vivo.scripps.edu/individual/n7067> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n7083> . \n " +
"<http://vivo.scripps.edu/individual/n7067> <http://vivoweb.org/ontology/core#roleIn> <http://vivo.scripps.edu/individual/n7080> . \n " +
"<http://vivo.scripps.edu/individual/n7067> <http://vivoweb.org/ontology/core#roleContributesTo> <http://vivo.scripps.edu/individual/n7080> . \n " +
"<http://vivo.scripps.edu/individual/n7067> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#LeaderRole> . \n " +
"<http://vivo.scripps.edu/individual/n7067> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n " +
"<http://vivo.scripps.edu/individual/n7067> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#LeaderRole> . \n " +
"<http://vivo.scripps.edu/individual/n7067> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n7080> <http://www.w3.org/2000/01/rdf-schema#label> \"University1\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n7080> <http://vivoweb.org/ontology/core#relatedRole> <http://vivo.scripps.edu/individual/n7067> . \n " +
"<http://vivo.scripps.edu/individual/n7080> <http://vivoweb.org/ontology/core#contributingRole> <http://vivo.scripps.edu/individual/n7067> . \n " +
"<http://vivo.scripps.edu/individual/n7080> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#University> .\n " +
"<http://vivo.scripps.edu/individual/n7080> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#University> . \n " +
"<http://vivo.scripps.edu/individual/n7080> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n " +
"<http://vivo.scripps.edu/individual/n7080> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n7080> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Organization> . \n " ;
//make a test model with an person, a leader role node and a university
OntModel model = ModelFactory.createOntologyModel();
@ -174,10 +177,10 @@ public class AdditionalURIsForContextNodesTest {
public void testMemberRoleChanges(){
String n3 =
"<http://vivo.scripps.edu/individual/n4519> <http://vivoweb.org/ontology/core#hasMemberRole> <http://vivo.scripps.edu/individual/n6040> . \n " +
"<http://vivo.scripps.edu/individual/n4519> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n6040> . \n " +
"<http://vivo.scripps.edu/individual/n4519> <http://www.w3.org/2000/01/rdf-schema#label> \"2, Test\" . \n " +
"<http://vivo.scripps.edu/individual/n4519> <http://xmlns.com/foaf/0.1/lastName> \"2\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n4519> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
// "<http://vivo.scripps.edu/individual/n4519> <http://xmlns.com/foaf/0.1/lastName> \"2\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
// "<http://vivo.scripps.edu/individual/n4519> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n4519> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n " +
"<http://vivo.scripps.edu/individual/n4519> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n " +
"<http://vivo.scripps.edu/individual/n4519> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n " +
@ -185,16 +188,16 @@ public class AdditionalURIsForContextNodesTest {
"<http://vivo.scripps.edu/individual/n6040> <http://www.w3.org/2000/01/rdf-schema#label> \"Member Role\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n6040> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n6031> . \n " +
"<http://vivo.scripps.edu/individual/n6040> <http://vivoweb.org/ontology/core#roleIn> <http://vivo.scripps.edu/individual/n6004> . \n " +
"<http://vivo.scripps.edu/individual/n6040> <http://vivoweb.org/ontology/core#roleContributesTo> <http://vivo.scripps.edu/individual/n6004> . \n " +
"<http://vivo.scripps.edu/individual/n6040> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#MemberRole> . \n " +
"<http://vivo.scripps.edu/individual/n6040> <http://vivoweb.org/ontology/core#memberRoleOf> <http://vivo.scripps.edu/individual/n4519> . \n " +
"<http://vivo.scripps.edu/individual/n6040> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n4519> . \n " +
"<http://vivo.scripps.edu/individual/n6040> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#MemberRole> . \n " +
"<http://vivo.scripps.edu/individual/n6040> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n " +
"<http://vivo.scripps.edu/individual/n6040> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n6004> <http://www.w3.org/2000/01/rdf-schema#label> \"University2\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n6004> <http://vivoweb.org/ontology/core#relatedRole> <http://vivo.scripps.edu/individual/n6040> . \n " +
"<http://vivo.scripps.edu/individual/n6004> <http://vivoweb.org/ontology/core#contributingRole> <http://vivo.scripps.edu/individual/n6040> . \n " +
"<http://vivo.scripps.edu/individual/n6004> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#University> . \n " +
"<http://vivo.scripps.edu/individual/n6004> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#University> . \n " +
"<http://vivo.scripps.edu/individual/n6004> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n " +
@ -228,25 +231,25 @@ public class AdditionalURIsForContextNodesTest {
String n3 =
"<http://vivo.scripps.edu/individual/n4858> <http://www.w3.org/2000/01/rdf-schema#label> \"3, Test\" . \n" +
"<http://vivo.scripps.edu/individual/n4858> <http://xmlns.com/foaf/0.1/lastName> \"3\"^^<http://www.w3.org/2001/XMLSchema#string> .\n" +
"<http://vivo.scripps.edu/individual/n4858> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n4858> <http://vivoweb.org/ontology/core#hasClinicalRole> <http://vivo.scripps.edu/individual/n5185> . \n" +
// "<http://vivo.scripps.edu/individual/n4858> <http://xmlns.com/foaf/0.1/lastName> \"3\"^^<http://www.w3.org/2001/XMLSchema#string> .\n" +
// "<http://vivo.scripps.edu/individual/n4858> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n4858> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n5185> . \n" +
"<http://vivo.scripps.edu/individual/n4858> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n4858> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
"<http://vivo.scripps.edu/individual/n4858> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n4858> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n5185> <http://vivoweb.org/ontology/core#clinicalRoleOf> <http://vivo.scripps.edu/individual/n4858> . \n" +
"<http://vivo.scripps.edu/individual/n5185> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n4858> . \n" +
"<http://vivo.scripps.edu/individual/n5185> <http://www.w3.org/2000/01/rdf-schema#label> \"Clinical Role\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n5185> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n5180> . \n" +
"<http://vivo.scripps.edu/individual/n5185> <http://vivoweb.org/ontology/core#roleIn> <http://vivo.scripps.edu/individual/n5177> . \n" +
"<http://vivo.scripps.edu/individual/n5185> <http://purl.obolibrary.org/obo/BFO_0000054> <http://vivo.scripps.edu/individual/n5177> . \n" +
"<http://vivo.scripps.edu/individual/n5185> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#ClinicalRole> . \n" +
"<http://vivo.scripps.edu/individual/n5185> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n" +
"<http://vivo.scripps.edu/individual/n5185> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n5185> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#ClinicalRole> . \n" +
"<http://vivo.scripps.edu/individual/n5177> <http://www.w3.org/2000/01/rdf-schema#label> \"Project1\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n5177> <http://vivoweb.org/ontology/core#relatedRole> <http://vivo.scripps.edu/individual/n5185> . \n" +
"<http://vivo.scripps.edu/individual/n5177> <http://purl.obolibrary.org/obo/BFO_0000055> <http://vivo.scripps.edu/individual/n5185> . \n" +
"<http://vivo.scripps.edu/individual/n5177> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#Project> . \n" +
"<http://vivo.scripps.edu/individual/n5177> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Project> . \n" +
"<http://vivo.scripps.edu/individual/n5177> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
@ -277,28 +280,28 @@ public class AdditionalURIsForContextNodesTest {
String n3 =
"<http://vivo.scripps.edu/individual/n5651> <http://www.w3.org/2000/01/rdf-schema#label> \"4, Test\" . \n" +
"<http://vivo.scripps.edu/individual/n5651> <http://xmlns.com/foaf/0.1/lastName> \"4\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n5651> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n5651> <http://vivoweb.org/ontology/core#hasClinicalRole> <http://vivo.scripps.edu/individual/n4428> . \n" +
// "<http://vivo.scripps.edu/individual/n5651> <http://xmlns.com/foaf/0.1/lastName> \"4\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
// "<http://vivo.scripps.edu/individual/n5651> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n5651> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n4428> . \n" +
"<http://vivo.scripps.edu/individual/n5651> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n5651> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
"<http://vivo.scripps.edu/individual/n5651> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n5651> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n4428> <http://vivoweb.org/ontology/core#clinicalRoleOf> <http://vivo.scripps.edu/individual/n5651> . \n" +
"<http://vivo.scripps.edu/individual/n4428> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n5651> . \n" +
"<http://vivo.scripps.edu/individual/n4428> <http://www.w3.org/2000/01/rdf-schema#label> \"Clinical Role 2\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n4428> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n4444> . \n" +
"<http://vivo.scripps.edu/individual/n4428> <http://vivoweb.org/ontology/core#roleIn> <http://vivo.scripps.edu/individual/n4442> . \n" +
"<http://vivo.scripps.edu/individual/n4428> <http://vivoweb.org/ontology/core#roleContributesTo> <http://vivo.scripps.edu/individual/n4442> . \n" +
"<http://vivo.scripps.edu/individual/n4428> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#ClinicalRole> . \n" +
"<http://vivo.scripps.edu/individual/n4428> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n" +
"<http://vivo.scripps.edu/individual/n4428> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n4428> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#ClinicalRole> . \n" +
"<http://vivo.scripps.edu/individual/n4442> <http://www.w3.org/2000/01/rdf-schema#label> \"Service1\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n4442> <http://vivoweb.org/ontology/core#relatedRole> <http://vivo.scripps.edu/individual/n4428> . \n" +
"<http://vivo.scripps.edu/individual/n4442> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#Service> . \n" +
"<http://vivo.scripps.edu/individual/n4442> <http://vivoweb.org/ontology/core#contributingRole> <http://vivo.scripps.edu/individual/n4428> . \n" +
"<http://vivo.scripps.edu/individual/n4442> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://purl.obolibrary.org/obo/ERO_0000005> . \n" +
"<http://vivo.scripps.edu/individual/n4442> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n4442> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Service> . \n" ;
"<http://vivo.scripps.edu/individual/n4442> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.obolibrary.org/obo/ERO_0000005> . \n" ;
//make a test model with an person, a clinical role node and a service
OntModel model = ModelFactory.createOntologyModel();
@ -322,26 +325,26 @@ public class AdditionalURIsForContextNodesTest {
@Test
public void testPresenterRoleChangesForPresentation(){
String n3 =
"<http://vivo.scripps.edu/individual/n5596> <http://vivoweb.org/ontology/core#hasPresenterRole> <http://vivo.scripps.edu/individual/n1294> . \n" +
"<http://vivo.scripps.edu/individual/n5596> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n1294> . \n" +
"<http://vivo.scripps.edu/individual/n5596> <http://www.w3.org/2000/01/rdf-schema#label> \"5, Test\" . \n" +
"<http://vivo.scripps.edu/individual/n5596> <http://xmlns.com/foaf/0.1/lastName> \"5\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n5596> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
// "<http://vivo.scripps.edu/individual/n5596> <http://xmlns.com/foaf/0.1/lastName> \"5\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
// "<http://vivo.scripps.edu/individual/n5596> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n5596> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n5596> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
"<http://vivo.scripps.edu/individual/n5596> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n5596> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n1294> <http://vivoweb.org/ontology/core#presenterRoleOf> <http://vivo.scripps.edu/individual/n5596> . \n" +
"<http://vivo.scripps.edu/individual/n1294> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n5596> . \n" +
"<http://vivo.scripps.edu/individual/n1294> <http://www.w3.org/2000/01/rdf-schema#label> \"Presenter Role\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n1294> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n1304> . \n" +
"<http://vivo.scripps.edu/individual/n1294> <http://vivoweb.org/ontology/core#roleIn> <http://vivo.scripps.edu/individual/n1305> . \n" +
"<http://vivo.scripps.edu/individual/n1294> <http://purl.obolibrary.org/obo/BFO_0000054> <http://vivo.scripps.edu/individual/n1305> . \n" +
"<http://vivo.scripps.edu/individual/n1294> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#PresenterRole> . \n" +
"<http://vivo.scripps.edu/individual/n1294> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n" +
"<http://vivo.scripps.edu/individual/n1294> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#PresenterRole> . \n" +
"<http://vivo.scripps.edu/individual/n1294> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n1305> <http://www.w3.org/2000/01/rdf-schema#label> \"Presentation 1\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n1305> <http://vivoweb.org/ontology/core#relatedRole> <http://vivo.scripps.edu/individual/n1294> . \n" +
"<http://vivo.scripps.edu/individual/n1305> <http://purl.obolibrary.org/obo/BFO_0000055> <http://vivo.scripps.edu/individual/n1294> . \n" +
"<http://vivo.scripps.edu/individual/n1305> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#Presentation> . \n" +
"<http://vivo.scripps.edu/individual/n1305> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Presentation> . \n" +
"<http://vivo.scripps.edu/individual/n1305> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.org/NET/c4dm/event.owl#Event> . \n" +
@ -370,26 +373,26 @@ public class AdditionalURIsForContextNodesTest {
public void testPresenterRoleChangesForInvitedTalk(){
String n3 =
"<http://vivo.scripps.edu/individual/n4112> <http://vivoweb.org/ontology/core#hasPresenterRole> <http://vivo.scripps.edu/individual/n4144> . \n " +
"<http://vivo.scripps.edu/individual/n4112> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n4144> . \n " +
"<http://vivo.scripps.edu/individual/n4112> <http://www.w3.org/2000/01/rdf-schema#label> \"6, Test\" . \n " +
"<http://vivo.scripps.edu/individual/n4112> <http://xmlns.com/foaf/0.1/lastName> \"6\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n4112> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
// "<http://vivo.scripps.edu/individual/n4112> <http://xmlns.com/foaf/0.1/lastName> \"6\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
// "<http://vivo.scripps.edu/individual/n4112> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n4112> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n " +
"<http://vivo.scripps.edu/individual/n4112> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n " +
"<http://vivo.scripps.edu/individual/n4112> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n " +
"<http://vivo.scripps.edu/individual/n4112> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n4144> <http://vivoweb.org/ontology/core#presenterRoleOf> <http://vivo.scripps.edu/individual/n4112> . \n " +
"<http://vivo.scripps.edu/individual/n4144> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n4112> . \n " +
"<http://vivo.scripps.edu/individual/n4144> <http://www.w3.org/2000/01/rdf-schema#label> \"Presenter Role 2\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n4144> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n4136> . \n " +
"<http://vivo.scripps.edu/individual/n4144> <http://vivoweb.org/ontology/core#roleIn> <http://vivo.scripps.edu/individual/n4107> . \n " +
"<http://vivo.scripps.edu/individual/n4144> <http://purl.obolibrary.org/obo/BFO_0000054> <http://vivo.scripps.edu/individual/n4107> . \n " +
"<http://vivo.scripps.edu/individual/n4144> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#PresenterRole> . \n " +
"<http://vivo.scripps.edu/individual/n4144> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n " +
"<http://vivo.scripps.edu/individual/n4144> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#PresenterRole> . \n " +
"<http://vivo.scripps.edu/individual/n4144> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n4107> <http://www.w3.org/2000/01/rdf-schema#label> \"Invited Talk 1\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n4107> <http://vivoweb.org/ontology/core#relatedRole> <http://vivo.scripps.edu/individual/n4144> . \n " +
"<http://vivo.scripps.edu/individual/n4107> <http://purl.obolibrary.org/obo/BFO_0000055> <http://vivo.scripps.edu/individual/n4144> . \n " +
"<http://vivo.scripps.edu/individual/n4107> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#InvitedTalk> . \n " +
"<http://vivo.scripps.edu/individual/n4107> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Presentation> . \n " +
"<http://vivo.scripps.edu/individual/n4107> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://purl.org/NET/c4dm/event.owl#Event> . \n " +
@ -405,11 +408,11 @@ public class AdditionalURIsForContextNodesTest {
//if the person changes then the invited talk needs to be updated
List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n4112");
assertTrue("did not find service for clinical role", uris.contains("http://vivo.scripps.edu/individual/n4107" ));
assertTrue("did not find invited talk for person", uris.contains("http://vivo.scripps.edu/individual/n4107" ));
//if the invited talk changes then the person needs to be updated
uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n4107");
assertTrue("did not find person for clinical role", uris.contains("http://vivo.scripps.edu/individual/n4112" ));
assertTrue("did not find person for invited talk", uris.contains("http://vivo.scripps.edu/individual/n4112" ));
}
@ -420,9 +423,9 @@ public class AdditionalURIsForContextNodesTest {
String n3 =
"<http://vivo.scripps.edu/individual/n4957> <http://www.w3.org/2000/01/rdf-schema#label> \"7, Test\" . \n" +
"<http://vivo.scripps.edu/individual/n4957> <http://xmlns.com/foaf/0.1/lastName> \"7\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n4957> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n4957> <http://vivoweb.org/ontology/core#hasResearcherRole> <http://vivo.scripps.edu/individual/n4288> . \n" +
// "<http://vivo.scripps.edu/individual/n4957> <http://xmlns.com/foaf/0.1/lastName> \"7\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
// "<http://vivo.scripps.edu/individual/n4957> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n4957> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n4288> . \n" +
"<http://vivo.scripps.edu/individual/n4957> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n4957> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
"<http://vivo.scripps.edu/individual/n4957> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
@ -430,15 +433,15 @@ public class AdditionalURIsForContextNodesTest {
"<http://vivo.scripps.edu/individual/n4288> <http://www.w3.org/2000/01/rdf-schema#label> \"Researcher Role\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n4288> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n4251> . \n" +
"<http://vivo.scripps.edu/individual/n4288> <http://vivoweb.org/ontology/core#roleIn> <http://vivo.scripps.edu/individual/n4252> . \n" +
"<http://vivo.scripps.edu/individual/n4288> <http://vivoweb.org/ontology/core#relatedBy> <http://vivo.scripps.edu/individual/n4252> . \n" +
"<http://vivo.scripps.edu/individual/n4288> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#ResearcherRole> . \n" +
"<http://vivo.scripps.edu/individual/n4288> <http://vivoweb.org/ontology/core#researcherRoleOf> <http://vivo.scripps.edu/individual/n4957> . \n" +
"<http://vivo.scripps.edu/individual/n4288> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n4957> . \n" +
"<http://vivo.scripps.edu/individual/n4288> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n" +
"<http://vivo.scripps.edu/individual/n4288> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#ResearcherRole> . \n" +
"<http://vivo.scripps.edu/individual/n4288> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n4252> <http://www.w3.org/2000/01/rdf-schema#label> \"Grant1\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n4252> <http://vivoweb.org/ontology/core#relatedRole> <http://vivo.scripps.edu/individual/n4288> . \n" +
"<http://vivo.scripps.edu/individual/n4252> <http://vivoweb.org/ontology/core#relates> <http://vivo.scripps.edu/individual/n4288> . \n" +
"<http://vivo.scripps.edu/individual/n4252> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#Grant> . \n" +
"<http://vivo.scripps.edu/individual/n4252> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Agreement> . \n" +
"<http://vivo.scripps.edu/individual/n4252> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
@ -469,9 +472,9 @@ public class AdditionalURIsForContextNodesTest {
String n3 =
"<http://vivo.scripps.edu/individual/n2029> <http://www.w3.org/2000/01/rdf-schema#label> \"8, Test\" . \n " +
"<http://vivo.scripps.edu/individual/n2029> <http://xmlns.com/foaf/0.1/lastName> \"8\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n2029> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n2029> <http://vivoweb.org/ontology/core#hasResearcherRole> <http://vivo.scripps.edu/individual/n556> . \n " +
// "<http://vivo.scripps.edu/individual/n2029> <http://xmlns.com/foaf/0.1/lastName> \"8\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
// "<http://vivo.scripps.edu/individual/n2029> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n2029> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n556> . \n " +
"<http://vivo.scripps.edu/individual/n2029> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n " +
"<http://vivo.scripps.edu/individual/n2029> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n " +
"<http://vivo.scripps.edu/individual/n2029> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n " +
@ -479,16 +482,16 @@ public class AdditionalURIsForContextNodesTest {
"<http://vivo.scripps.edu/individual/n556> <http://www.w3.org/2000/01/rdf-schema#label> \"Researcher Role 2\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n556> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n568> . \n " +
"<http://vivo.scripps.edu/individual/n556> <http://vivoweb.org/ontology/core#roleIn> <http://vivo.scripps.edu/individual/n564> . \n " +
"<http://vivo.scripps.edu/individual/n556> <http://purl.obolibrary.org/obo/BFO_0000054> <http://vivo.scripps.edu/individual/n564> . \n " +
"<http://vivo.scripps.edu/individual/n556> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#ResearcherRole> . \n " +
"<http://vivo.scripps.edu/individual/n556> <http://vivoweb.org/ontology/core#researcherRoleOf> <http://vivo.scripps.edu/individual/n2029> . \n " +
"<http://vivo.scripps.edu/individual/n556> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n2029> . \n " +
"<http://vivo.scripps.edu/individual/n556> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n " +
"<http://vivo.scripps.edu/individual/n556> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#ResearcherRole> . \n " +
"<http://vivo.scripps.edu/individual/n556> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
"<http://vivo.scripps.edu/individual/n564> <http://www.w3.org/2000/01/rdf-schema#label> \"Project2\"^^<http://www.w3.org/2001/XMLSchema#string> . \n " +
"<http://vivo.scripps.edu/individual/n564> <http://vivoweb.org/ontology/core#relatedRole> <http://vivo.scripps.edu/individual/n556> . \n " +
"<http://vivo.scripps.edu/individual/n564> <http://purl.obolibrary.org/obo/BFO_0000055> <http://vivo.scripps.edu/individual/n556> . \n " +
"<http://vivo.scripps.edu/individual/n564> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#Project> . \n " +
"<http://vivo.scripps.edu/individual/n564> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Project> . \n " +
"<http://vivo.scripps.edu/individual/n564> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n " +
@ -519,18 +522,18 @@ public class AdditionalURIsForContextNodesTest {
String n3 =
"<http://vivo.scripps.edu/individual/n2368> <http://vivoweb.org/ontology/core#hasPrincipalInvestigatorRole> <http://vivo.scripps.edu/individual/n1740> . \n" +
"<http://vivo.scripps.edu/individual/n2368> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n1740> . \n" +
"<http://vivo.scripps.edu/individual/n2368> <http://www.w3.org/2000/01/rdf-schema#label> \"8, Test\" . \n" +
"<http://vivo.scripps.edu/individual/n2368> <http://xmlns.com/foaf/0.1/lastName> \"8\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n2368> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
// "<http://vivo.scripps.edu/individual/n2368> <http://xmlns.com/foaf/0.1/lastName> \"8\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
// "<http://vivo.scripps.edu/individual/n2368> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n2368> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n2368> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
"<http://vivo.scripps.edu/individual/n2368> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n2368> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n1740> <http://vivoweb.org/ontology/core#principalInvestigatorRoleOf> <http://vivo.scripps.edu/individual/n2368> . \n" +
"<http://vivo.scripps.edu/individual/n1740> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n2368> . \n" +
"<http://vivo.scripps.edu/individual/n1740> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n1756> . \n" +
"<http://vivo.scripps.edu/individual/n1740> <http://vivoweb.org/ontology/core#roleIn> <http://vivo.scripps.edu/individual/n1742> . \n" +
"<http://vivo.scripps.edu/individual/n1740> <http://vivoweb.org/ontology/core#relatedBy> <http://vivo.scripps.edu/individual/n1742> . \n" +
"<http://vivo.scripps.edu/individual/n1740> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#PrincipalInvestigatorRole> . \n" +
"<http://vivo.scripps.edu/individual/n1740> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n" +
"<http://vivo.scripps.edu/individual/n1740> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#PrincipalInvestigatorRole> . \n" +
@ -539,7 +542,7 @@ public class AdditionalURIsForContextNodesTest {
"<http://vivo.scripps.edu/individual/n1740> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#InvestigatorRole> . \n" +
"<http://vivo.scripps.edu/individual/n1742> <http://www.w3.org/2000/01/rdf-schema#label> \"Grant 2\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n1742> <http://vivoweb.org/ontology/core#relatedRole> <http://vivo.scripps.edu/individual/n1740> . \n" +
"<http://vivo.scripps.edu/individual/n1742> <http://vivoweb.org/ontology/core#relates> <http://vivo.scripps.edu/individual/n1740> . \n" +
"<http://vivo.scripps.edu/individual/n1742> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#Grant> . \n" +
"<http://vivo.scripps.edu/individual/n1742> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Agreement> . \n" +
"<http://vivo.scripps.edu/individual/n1742> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
@ -555,11 +558,11 @@ public class AdditionalURIsForContextNodesTest {
//if the person changes then the grant needs to be updated
List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n2368");
assertTrue("did not find service for clinical role", uris.contains("http://vivo.scripps.edu/individual/n1742" ));
assertTrue("did not find grant for pi", uris.contains("http://vivo.scripps.edu/individual/n1742" ));
//if the grant changes then the person needs to be updated
uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n1742");
assertTrue("did not find person for clinical role", uris.contains("http://vivo.scripps.edu/individual/n2368" ));
assertTrue("did not find pi for grant", uris.contains("http://vivo.scripps.edu/individual/n2368" ));
}
@ -570,17 +573,17 @@ public class AdditionalURIsForContextNodesTest {
String n3 =
"<http://vivo.scripps.edu/individual/n1373> <http://www.w3.org/2000/01/rdf-schema#label> \"9, Test\" . \n" +
"<http://vivo.scripps.edu/individual/n1373> <http://xmlns.com/foaf/0.1/lastName> \"9\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n1373> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
// "<http://vivo.scripps.edu/individual/n1373> <http://xmlns.com/foaf/0.1/lastName> \"9\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
// "<http://vivo.scripps.edu/individual/n1373> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n1373> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n1373> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
"<http://vivo.scripps.edu/individual/n1373> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n1373> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n1373> <http://vivoweb.org/ontology/core#hasCo-PrincipalInvestigatorRole> <http://vivo.scripps.edu/individual/n4928> . \n" +
"<http://vivo.scripps.edu/individual/n1373> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n4928> . \n" +
"<http://vivo.scripps.edu/individual/n4928> <http://vivoweb.org/ontology/core#co-PrincipalInvestigatorRoleOf> <http://vivo.scripps.edu/individual/n1373> . \n" +
"<http://vivo.scripps.edu/individual/n4928> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n1373> . \n" +
"<http://vivo.scripps.edu/individual/n4928> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n4895> . \n" +
"<http://vivo.scripps.edu/individual/n4928> <http://vivoweb.org/ontology/core#roleIn> <http://vivo.scripps.edu/individual/n4931> . \n" +
"<http://vivo.scripps.edu/individual/n4928> <http://vivoweb.org/ontology/core#relatedBy> <http://vivo.scripps.edu/individual/n4931> . \n" +
"<http://vivo.scripps.edu/individual/n4928> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#CoPrincipalInvestigatorRole> . \n" +
"<http://vivo.scripps.edu/individual/n4928> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#CoPrincipalInvestigatorRole> . \n" +
"<http://vivo.scripps.edu/individual/n4928> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n" +
@ -589,7 +592,7 @@ public class AdditionalURIsForContextNodesTest {
"<http://vivo.scripps.edu/individual/n4928> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#InvestigatorRole> . \n" +
"<http://vivo.scripps.edu/individual/n4931> <http://www.w3.org/2000/01/rdf-schema#label> \"Grant 3\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n4931> <http://vivoweb.org/ontology/core#relatedRole> <http://vivo.scripps.edu/individual/n4928> . \n" +
"<http://vivo.scripps.edu/individual/n4931> <http://vivoweb.org/ontology/core#relates> <http://vivo.scripps.edu/individual/n4928> . \n" +
"<http://vivo.scripps.edu/individual/n4931> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#Grant> . \n" +
"<http://vivo.scripps.edu/individual/n4931> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Agreement> . \n" +
"<http://vivo.scripps.edu/individual/n4931> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
@ -619,25 +622,25 @@ public class AdditionalURIsForContextNodesTest {
String n3 =
"<http://vivo.scripps.edu/individual/n5282> <http://www.w3.org/2000/01/rdf-schema#label> \"10, Test\" . \n" +
"<http://vivo.scripps.edu/individual/n5282> <http://xmlns.com/foaf/0.1/lastName> \"10\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n5282> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
// "<http://vivo.scripps.edu/individual/n5282> <http://xmlns.com/foaf/0.1/lastName> \"10\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
// "<http://vivo.scripps.edu/individual/n5282> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n5282> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n5282> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
"<http://vivo.scripps.edu/individual/n5282> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
"<http://vivo.scripps.edu/individual/n5282> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n5282> <http://vivoweb.org/ontology/core#hasInvestigatorRole> <http://vivo.scripps.edu/individual/n157> . \n" +
"<http://vivo.scripps.edu/individual/n5282> <http://purl.obolibrary.org/obo/RO_0000053> <http://vivo.scripps.edu/individual/n157> . \n" +
"<http://vivo.scripps.edu/individual/n157> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n127> . \n" +
"<http://vivo.scripps.edu/individual/n157> <http://vivoweb.org/ontology/core#roleIn> <http://vivo.scripps.edu/individual/n160> . \n" +
"<http://vivo.scripps.edu/individual/n157> <http://vivoweb.org/ontology/core#relatedBy> <http://vivo.scripps.edu/individual/n160> . \n" +
"<http://vivo.scripps.edu/individual/n157> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#InvestigatorRole> . \n" +
"<http://vivo.scripps.edu/individual/n157> <http://vivoweb.org/ontology/core#investigatorRoleOf> <http://vivo.scripps.edu/individual/n5282> . \n" +
"<http://vivo.scripps.edu/individual/n157> <http://purl.obolibrary.org/obo/RO_0000052> <http://vivo.scripps.edu/individual/n5282> . \n" +
"<http://vivo.scripps.edu/individual/n157> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n" +
"<http://vivo.scripps.edu/individual/n157> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#ResearcherRole> . \n" +
"<http://vivo.scripps.edu/individual/n157> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
"<http://vivo.scripps.edu/individual/n157> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#InvestigatorRole> . \n" +
"<http://vivo.scripps.edu/individual/n160> <http://www.w3.org/2000/01/rdf-schema#label> \"Grant 4\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
"<http://vivo.scripps.edu/individual/n160> <http://vivoweb.org/ontology/core#relatedRole> <http://vivo.scripps.edu/individual/n157> . \n" +
"<http://vivo.scripps.edu/individual/n160> <http://vivoweb.org/ontology/core#relates> <http://vivo.scripps.edu/individual/n157> . \n" +
"<http://vivo.scripps.edu/individual/n160> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#Grant> . \n" +
"<http://vivo.scripps.edu/individual/n160> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Agreement> . \n" +
"<http://vivo.scripps.edu/individual/n160> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
@ -653,11 +656,11 @@ public class AdditionalURIsForContextNodesTest {
//if the investigator changes then the grant needs to be updated
List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n5282");
assertTrue("did not find grant for co-pi", uris.contains("http://vivo.scripps.edu/individual/n160" ));
assertTrue("did not find grant for investigator", uris.contains("http://vivo.scripps.edu/individual/n160" ));
//if the grant changes then the investigator needs to be updated
uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n160");
assertTrue("did not find co-pi for grant", uris.contains("http://vivo.scripps.edu/individual/n5282" ));
assertTrue("did not find investigator for grant", uris.contains("http://vivo.scripps.edu/individual/n5282" ));