committing test cases for PrincipalInvestigatorRole, Co-PrincipalInvestigatorRole and InvestigatorRole
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deepakkoni
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1 changed files with 148 additions and 1 deletions
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@ -512,9 +512,156 @@ public class AdditionalURIsForContextNodesTest {
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assertTrue("did not find person for clinical role", uris.contains("http://vivo.scripps.edu/individual/n2029" ));
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}
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@Test
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public void testPrincipalInvestigatorRoleChanges(){
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String n3 =
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"<http://vivo.scripps.edu/individual/n2368> <http://vivoweb.org/ontology/core#hasPrincipalInvestigatorRole> <http://vivo.scripps.edu/individual/n1740> . \n" +
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"<http://vivo.scripps.edu/individual/n2368> <http://www.w3.org/2000/01/rdf-schema#label> \"8, Test\" . \n" +
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"<http://vivo.scripps.edu/individual/n2368> <http://xmlns.com/foaf/0.1/lastName> \"8\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
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"<http://vivo.scripps.edu/individual/n2368> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
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"<http://vivo.scripps.edu/individual/n2368> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n" +
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"<http://vivo.scripps.edu/individual/n2368> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
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"<http://vivo.scripps.edu/individual/n2368> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
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"<http://vivo.scripps.edu/individual/n2368> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
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"<http://vivo.scripps.edu/individual/n1740> <http://vivoweb.org/ontology/core#principalInvestigatorRoleOf> <http://vivo.scripps.edu/individual/n2368> . \n" +
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"<http://vivo.scripps.edu/individual/n1740> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n1756> . \n" +
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"<http://vivo.scripps.edu/individual/n1740> <http://vivoweb.org/ontology/core#roleIn> <http://vivo.scripps.edu/individual/n1742> . \n" +
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"<http://vivo.scripps.edu/individual/n1740> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#PrincipalInvestigatorRole> . \n" +
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"<http://vivo.scripps.edu/individual/n1740> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n" +
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"<http://vivo.scripps.edu/individual/n1740> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#PrincipalInvestigatorRole> . \n" +
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"<http://vivo.scripps.edu/individual/n1740> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#ResearcherRole> . \n" +
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"<http://vivo.scripps.edu/individual/n1740> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
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"<http://vivo.scripps.edu/individual/n1740> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#InvestigatorRole> . \n" +
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"<http://vivo.scripps.edu/individual/n1742> <http://www.w3.org/2000/01/rdf-schema#label> \"Grant 2\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
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"<http://vivo.scripps.edu/individual/n1742> <http://vivoweb.org/ontology/core#relatedRole> <http://vivo.scripps.edu/individual/n1740> . \n" +
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"<http://vivo.scripps.edu/individual/n1742> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#Grant> . \n" +
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"<http://vivo.scripps.edu/individual/n1742> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Agreement> . \n" +
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"<http://vivo.scripps.edu/individual/n1742> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
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"<http://vivo.scripps.edu/individual/n1742> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Grant> . \n" ;
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//make a test model with an person, a principal investigator role node and a grant
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OntModel model = ModelFactory.createOntologyModel();
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model.read( new StringReader(n3), null, "N3");
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//make an AdditionalURIsForContextNodesTest object with that model
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AdditionalURIsForContextNodes uriFinder = new AdditionalURIsForContextNodes( model );
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//if the person changes then the grant needs to be updated
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List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n2368");
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assertTrue("did not find service for clinical role", uris.contains("http://vivo.scripps.edu/individual/n1742" ));
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//if the grant changes then the person needs to be updated
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uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n1742");
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assertTrue("did not find person for clinical role", uris.contains("http://vivo.scripps.edu/individual/n2368" ));
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}
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@Test
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public void testCoPrincipalInvestigatorRoleChanges(){
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String n3 =
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"<http://vivo.scripps.edu/individual/n1373> <http://www.w3.org/2000/01/rdf-schema#label> \"9, Test\" . \n" +
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"<http://vivo.scripps.edu/individual/n1373> <http://xmlns.com/foaf/0.1/lastName> \"9\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
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"<http://vivo.scripps.edu/individual/n1373> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
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"<http://vivo.scripps.edu/individual/n1373> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n" +
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"<http://vivo.scripps.edu/individual/n1373> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
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"<http://vivo.scripps.edu/individual/n1373> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
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"<http://vivo.scripps.edu/individual/n1373> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
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"<http://vivo.scripps.edu/individual/n1373> <http://vivoweb.org/ontology/core#hasCo-PrincipalInvestigatorRole> <http://vivo.scripps.edu/individual/n4928> . \n" +
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"<http://vivo.scripps.edu/individual/n4928> <http://vivoweb.org/ontology/core#co-PrincipalInvestigatorRoleOf> <http://vivo.scripps.edu/individual/n1373> . \n" +
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"<http://vivo.scripps.edu/individual/n4928> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n4895> . \n" +
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"<http://vivo.scripps.edu/individual/n4928> <http://vivoweb.org/ontology/core#roleIn> <http://vivo.scripps.edu/individual/n4931> . \n" +
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"<http://vivo.scripps.edu/individual/n4928> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#CoPrincipalInvestigatorRole> . \n" +
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"<http://vivo.scripps.edu/individual/n4928> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#CoPrincipalInvestigatorRole> . \n" +
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"<http://vivo.scripps.edu/individual/n4928> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n" +
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"<http://vivo.scripps.edu/individual/n4928> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#ResearcherRole> . \n" +
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"<http://vivo.scripps.edu/individual/n4928> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
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"<http://vivo.scripps.edu/individual/n4928> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#InvestigatorRole> . \n" +
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"<http://vivo.scripps.edu/individual/n4931> <http://www.w3.org/2000/01/rdf-schema#label> \"Grant 3\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
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"<http://vivo.scripps.edu/individual/n4931> <http://vivoweb.org/ontology/core#relatedRole> <http://vivo.scripps.edu/individual/n4928> . \n" +
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"<http://vivo.scripps.edu/individual/n4931> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#Grant> . \n" +
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"<http://vivo.scripps.edu/individual/n4931> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Agreement> . \n" +
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"<http://vivo.scripps.edu/individual/n4931> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
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"<http://vivo.scripps.edu/individual/n4931> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Grant> . \n" ;
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//make a test model with an person, a co-principal investigator role node and a grant
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OntModel model = ModelFactory.createOntologyModel();
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model.read( new StringReader(n3), null, "N3");
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//make an AdditionalURIsForContextNodesTest object with that model
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AdditionalURIsForContextNodes uriFinder = new AdditionalURIsForContextNodes( model );
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//if the copi changes then the grant needs to be updated
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List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n1373");
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assertTrue("did not find grant for co-pi", uris.contains("http://vivo.scripps.edu/individual/n4931" ));
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//if the grant changes then the copi needs to be updated
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uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n4931");
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assertTrue("did not find co-pi for grant", uris.contains("http://vivo.scripps.edu/individual/n1373" ));
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}
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@Test
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public void testInvestigatorRoleChanges(){
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String n3 =
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"<http://vivo.scripps.edu/individual/n5282> <http://www.w3.org/2000/01/rdf-schema#label> \"10, Test\" . \n" +
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"<http://vivo.scripps.edu/individual/n5282> <http://xmlns.com/foaf/0.1/lastName> \"10\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
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"<http://vivo.scripps.edu/individual/n5282> <http://xmlns.com/foaf/0.1/firstName> \"Test\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
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"<http://vivo.scripps.edu/individual/n5282> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://xmlns.com/foaf/0.1/Person> . \n" +
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"<http://vivo.scripps.edu/individual/n5282> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Agent> . \n" +
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"<http://vivo.scripps.edu/individual/n5282> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://xmlns.com/foaf/0.1/Person> . \n" +
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"<http://vivo.scripps.edu/individual/n5282> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
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"<http://vivo.scripps.edu/individual/n5282> <http://vivoweb.org/ontology/core#hasInvestigatorRole> <http://vivo.scripps.edu/individual/n157> . \n" +
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"<http://vivo.scripps.edu/individual/n157> <http://vivoweb.org/ontology/core#dateTimeInterval> <http://vivo.scripps.edu/individual/n127> . \n" +
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"<http://vivo.scripps.edu/individual/n157> <http://vivoweb.org/ontology/core#roleIn> <http://vivo.scripps.edu/individual/n160> . \n" +
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"<http://vivo.scripps.edu/individual/n157> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#InvestigatorRole> . \n" +
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"<http://vivo.scripps.edu/individual/n157> <http://vivoweb.org/ontology/core#investigatorRoleOf> <http://vivo.scripps.edu/individual/n5282> . \n" +
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"<http://vivo.scripps.edu/individual/n157> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Role> . \n" +
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"<http://vivo.scripps.edu/individual/n157> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#ResearcherRole> . \n" +
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"<http://vivo.scripps.edu/individual/n157> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
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"<http://vivo.scripps.edu/individual/n157> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#InvestigatorRole> . \n" +
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"<http://vivo.scripps.edu/individual/n160> <http://www.w3.org/2000/01/rdf-schema#label> \"Grant 4\"^^<http://www.w3.org/2001/XMLSchema#string> . \n" +
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"<http://vivo.scripps.edu/individual/n160> <http://vivoweb.org/ontology/core#relatedRole> <http://vivo.scripps.edu/individual/n157> . \n" +
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"<http://vivo.scripps.edu/individual/n160> <http://vitro.mannlib.cornell.edu/ns/vitro/0.7#mostSpecificType> <http://vivoweb.org/ontology/core#Grant> . \n" +
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"<http://vivo.scripps.edu/individual/n160> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Agreement> . \n" +
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"<http://vivo.scripps.edu/individual/n160> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://www.w3.org/2002/07/owl#Thing> . \n" +
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"<http://vivo.scripps.edu/individual/n160> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://vivoweb.org/ontology/core#Grant> . \n" ;
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//make a test model with an person, a investigator role node and a grant
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OntModel model = ModelFactory.createOntologyModel();
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model.read( new StringReader(n3), null, "N3");
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//make an AdditionalURIsForContextNodesTest object with that model
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AdditionalURIsForContextNodes uriFinder = new AdditionalURIsForContextNodes( model );
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//if the investigator changes then the grant needs to be updated
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List<String> uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n5282");
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assertTrue("did not find grant for co-pi", uris.contains("http://vivo.scripps.edu/individual/n160" ));
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//if the grant changes then the investigator needs to be updated
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uris = uriFinder.findAdditionalURIsToIndex( "http://vivo.scripps.edu/individual/n160");
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assertTrue("did not find co-pi for grant", uris.contains("http://vivo.scripps.edu/individual/n5282" ));
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}
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}
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