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Some code cleanup to remove hardcoded namespace and vivo-specific info such as vivo ontology classes for default types.

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elc2013 2011-03-10 14:48:06 +00:00
parent c45e0c49f4
commit 84c544accc
1 changed files with 30 additions and 33 deletions
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55
webapp/src/edu/cornell/mannlib/vitro/webapp/controller/JSONReconcileServlet.java
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@ -35,6 +35,7 @@ import org.json.JSONException;
import org.json.JSONObject; import org.json.JSONObject;
import edu.cornell.mannlib.vitro.webapp.beans.Individual; import edu.cornell.mannlib.vitro.webapp.beans.Individual;
import edu.cornell.mannlib.vitro.webapp.config.ConfigurationProperties;
import edu.cornell.mannlib.vitro.webapp.dao.IndividualDao; import edu.cornell.mannlib.vitro.webapp.dao.IndividualDao;
import edu.cornell.mannlib.vitro.webapp.flags.PortalFlag; import edu.cornell.mannlib.vitro.webapp.flags.PortalFlag;
import edu.cornell.mannlib.vitro.webapp.search.SearchException; import edu.cornell.mannlib.vitro.webapp.search.SearchException;
@ -52,7 +53,8 @@ import edu.cornell.mannlib.vitro.webapp.search.lucene.LuceneSetup;
*/ */
public class JSONReconcileServlet extends VitroHttpServlet { public class JSONReconcileServlet extends VitroHttpServlet {
private static String VIVO_NAMESPACE = "http://vivo.med.cornell.edu/individual/"; private String defaultNamespace;
private String defaultTypeList;
private static String QUERY_PARAMETER_NAME = "term"; private static String QUERY_PARAMETER_NAME = "term";
public static final int MAX_QUERY_LENGTH = 500; public static final int MAX_QUERY_LENGTH = 500;
private static final Log log = LogFactory.getLog(JSONReconcileServlet.class.getName()); private static final Log log = LogFactory.getLog(JSONReconcileServlet.class.getName());
@ -68,6 +70,8 @@ public class JSONReconcileServlet extends VitroHttpServlet {
throws ServletException, IOException { throws ServletException, IOException {
super.doGet(req, resp); super.doGet(req, resp);
VitroRequest vreq = new VitroRequest(req); VitroRequest vreq = new VitroRequest(req);
this.defaultNamespace = vreq.getWebappDaoFactory().getDefaultNamespace();
this.defaultTypeList = ConfigurationProperties.getBean(req).getProperty("Vitro.reconcile.defaultTypeList");
try { try {
if (vreq.getParameter("query") != null if (vreq.getParameter("query") != null
@ -113,7 +117,7 @@ public class JSONReconcileServlet extends VitroHttpServlet {
String qStr = (String) qObj; String qStr = (String) qObj;
queries.add(qStr); queries.add(qStr);
System.out.println(); System.out.println();
System.out.println("strArr: " + qStr + "\n"); System.out.println("query: " + qStr + "\n");
} }
try { try {
@ -139,7 +143,6 @@ public class JSONReconcileServlet extends VitroHttpServlet {
searchWithTypeMap.put(key, jsonLvl2); searchWithTypeMap.put(key, jsonLvl2);
} else { } else {
// user did not specify a type // user did not specify a type
// System.out.println("before search: " + jsonLvl2.getString("query"));
searchNoTypeMap.put(key, jsonLvl2); searchNoTypeMap.put(key, jsonLvl2);
} }
} }
@ -175,9 +178,10 @@ public class JSONReconcileServlet extends VitroHttpServlet {
JSONObject json = new JSONObject(); JSONObject json = new JSONObject();
try { try {
json.put("name", "VIVO Reconciliation Service"); json.put("name", "VIVO Reconciliation Service");
json.put("identifierSpace", this.VIVO_NAMESPACE); if (this.defaultNamespace != null) {
json.put("schemaSpace", this.VIVO_NAMESPACE); json.put("identifierSpace", this.defaultNamespace);
json.put("schemaSpace", this.defaultNamespace);
}
JSONObject viewJson = new JSONObject(); JSONObject viewJson = new JSONObject();
StringBuffer urlBuf = new StringBuffer(); StringBuffer urlBuf = new StringBuffer();
urlBuf.append("http://" + req.getServerName()); urlBuf.append("http://" + req.getServerName());
@ -190,26 +194,23 @@ public class JSONReconcileServlet extends VitroHttpServlet {
viewJson.put("url", urlBuf.toString() + "/individual?uri={{id}}"); viewJson.put("url", urlBuf.toString() + "/individual?uri={{id}}");
json.put("view", viewJson); json.put("view", viewJson);
HashMap<String, String> typeMap = new HashMap<String, String>(); // parse defaultTypeList from deploy.properties
typeMap.put("http://vivoweb.org/ontology/core#Course", "Course"); if (this.defaultTypeList != null) {
typeMap.put("http://vivoweb.org/ontology/core#Grant", "Grant"); String[] splitList = this.defaultTypeList.split(";");
typeMap.put("http://vivoweb.org/ontology/core#GeographicRegion", String[][] idNameArray = new String[splitList.length][splitList.length];
"Location"); for(int i = 0; i<splitList.length; i++) {
typeMap.put("http://xmlns.com/foaf/0.1/Organization", idNameArray[i] = splitList[i].split(",");
"Organization"); }
typeMap.put("http://xmlns.com/foaf/0.1/Person", "Person"); // process and add to json defaultTypes
typeMap.put("http://purl.org/ontology/bibo/Article", "Publication");
JSONArray defaultTypesJsonArr = new JSONArray(); JSONArray defaultTypesJsonArr = new JSONArray();
for (Map.Entry<String, String> entry : typeMap.entrySet()) { for (int i = 0; i<idNameArray.length; i++) {
String id = entry.getKey();
String name = entry.getValue();
JSONObject defaultTypesJson = new JSONObject(); JSONObject defaultTypesJson = new JSONObject();
defaultTypesJson.put("id", id); defaultTypesJson.put("id", idNameArray[i][0].trim());
defaultTypesJson.put("name", name); defaultTypesJson.put("name", idNameArray[i][1].trim());
defaultTypesJsonArr.put(defaultTypesJson); defaultTypesJsonArr.put(defaultTypesJson);
} }
json.put("defaultTypes", defaultTypesJsonArr); json.put("defaultTypes", defaultTypesJsonArr);
}
} catch (JSONException ex) { } catch (JSONException ex) {
throw new ServletException( throw new ServletException(
"JSONReconcileServlet: Could not create metadata: " + ex); "JSONReconcileServlet: Could not create metadata: " + ex);
@ -262,7 +263,6 @@ public class JSONReconcileServlet extends VitroHttpServlet {
} }
// begin search // begin search
// System.out.println("queryVal: " + queryVal);
JSONArray resultJsonArr = new JSONArray(); JSONArray resultJsonArr = new JSONArray();
Query query = getReconcileQuery(vreq, portalFlag, analyzer, Query query = getReconcileQuery(vreq, portalFlag, analyzer,
queryVal, searchType, propertiesList); queryVal, searchType, propertiesList);
@ -270,7 +270,6 @@ public class JSONReconcileServlet extends VitroHttpServlet {
TopDocs topDocs = searcherForRequest.search(query, null, limit); TopDocs topDocs = searcherForRequest.search(query, null, limit);
if (topDocs != null && topDocs.scoreDocs != null) { if (topDocs != null && topDocs.scoreDocs != null) {
int hitsLength = topDocs.scoreDocs.length; int hitsLength = topDocs.scoreDocs.length;
//System.out.println("hitsLength: " + hitsLength);
if (hitsLength > 0) { if (hitsLength > 0) {
for (int i = 0; i < topDocs.scoreDocs.length; i++) { for (int i = 0; i < topDocs.scoreDocs.length; i++) {
JSONObject resultJson = new JSONObject(); JSONObject resultJson = new JSONObject();
@ -285,7 +284,9 @@ public class JSONReconcileServlet extends VitroHttpServlet {
Individual ind = iDao.getIndividualByURI(uri); Individual ind = iDao.getIndividualByURI(uri);
if (ind != null) { if (ind != null) {
String name = ind.getName(); String name = ind.getName();
resultJson.put("id", uri); // encode e.g. # to %23
String modUri = java.net.URLEncoder.encode(uri, "ISO-8859-1");
resultJson.put("id", modUri);
resultJson.put("name", name); resultJson.put("name", name);
} }
List fields = doc.getFields(); List fields = doc.getFields();
@ -294,8 +295,7 @@ public class JSONReconcileServlet extends VitroHttpServlet {
Field field = (Field) fields.get(j); Field field = (Field) fields.get(j);
String fieldName = field.name(); String fieldName = field.name();
if ("type".equals(fieldName)) { if ("type".equals(fieldName)) {
// e.g. // e.g. http://aims.fao.org/aos/geopolitical.owl#area
// http://vivoweb.org/ontology/core#FacultyMember
String type = field.stringValue(); String type = field.stringValue();
int lastIndex2 = type.lastIndexOf('/') + 1; int lastIndex2 = type.lastIndexOf('/') + 1;
String typeName = type String typeName = type
@ -430,7 +430,6 @@ public class JSONReconcileServlet extends VitroHttpServlet {
private Query getReconcileQuery(VitroRequest request, PortalFlag portalState, private Query getReconcileQuery(VitroRequest request, PortalFlag portalState,
Analyzer analyzer, String querystr, String typeParam, ArrayList<String[]> propertiesList) throws SearchException{ Analyzer analyzer, String querystr, String typeParam, ArrayList<String[]> propertiesList) throws SearchException{
// System.out.println("querystr: " + querystr);
Query query = null; Query query = null;
try { try {
if( querystr == null){ if( querystr == null){
@ -449,7 +448,6 @@ public class JSONReconcileServlet extends VitroHttpServlet {
// filter by type // filter by type
if (typeParam != null) { if (typeParam != null) {
System.out.println("typeParam: " + typeParam);
BooleanQuery boolQuery = new BooleanQuery(); BooleanQuery boolQuery = new BooleanQuery();
boolQuery.add( new TermQuery( boolQuery.add( new TermQuery(
new Term(VitroLuceneTermNames.RDFTYPE, new Term(VitroLuceneTermNames.RDFTYPE,
@ -463,7 +461,6 @@ public class JSONReconcileServlet extends VitroHttpServlet {
Iterator<String[]> it = propertiesList.iterator(); Iterator<String[]> it = propertiesList.iterator();
while (it.hasNext()) { while (it.hasNext()) {
String[] pvPair = it.next(); String[] pvPair = it.next();
System.out.println("property val: " + pvPair[0] + " " + pvPair[1]);
Query extraQuery = makeReconcileNameQuery(pvPair[1], analyzer, request); Query extraQuery = makeReconcileNameQuery(pvPair[1], analyzer, request);
if (!"".equals(pvPair[0]) && pvPair[0] != null) { if (!"".equals(pvPair[0]) && pvPair[0] != null) {
BooleanQuery boolQuery = new BooleanQuery(); BooleanQuery boolQuery = new BooleanQuery();