Cleanup of IndividualSDB: break long lines, remove commented code
This commit is contained in:
bjl23
parent
fc1754db3c
commit
8e0fbcab09
1 changed files with 198 additions and 155 deletions
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@ -65,7 +65,8 @@ import edu.cornell.mannlib.vitro.webapp.utils.FlagMathUtils;
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public class IndividualSDB extends IndividualImpl implements Individual {
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private static final Log log = LogFactory.getLog(IndividualSDB.class.getName());
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private static final Log log = LogFactory.getLog(
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IndividualSDB.class.getName());
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private OntResource ind = null;
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private WebappDaoFactoryJena webappDaoFactory = null;
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private Float _searchBoostJena = null;
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@ -74,7 +75,9 @@ public class IndividualSDB extends IndividualImpl implements Individual {
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private String individualURI = null;
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private Model model = null;
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public IndividualSDB(String individualURI, DatasetWrapperFactory datasetWrapperFactory, WebappDaoFactoryJena wadf, Model initModel) {
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public IndividualSDB(String individualURI,
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DatasetWrapperFactory datasetWrapperFactory,
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WebappDaoFactoryJena wadf, Model initModel) {
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this.individualURI = individualURI;
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this.dwf = datasetWrapperFactory;
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@ -82,21 +85,28 @@ public class IndividualSDB extends IndividualImpl implements Individual {
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initModel.getLock().enterCriticalSection(Lock.READ);
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String getStatements =
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"CONSTRUCT \n" +
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"{ <"+individualURI+"> <" + RDFS.label.getURI() + "> ?ooo. \n" +
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"{ <"+individualURI+"> <" + RDFS.label.getURI() +
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"> ?ooo. \n" +
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"<"+individualURI+"> a ?type . \n" +
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"<"+individualURI+"> <" + VitroVocabulary.MONIKER + "> ?moniker \n" +
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"<"+individualURI+"> <" + VitroVocabulary.MONIKER +
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"> ?moniker \n" +
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"} \n" +
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"WHERE { \n" +
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"{ <"+individualURI+"> <" + RDFS.label.getURI() + "> ?ooo } \n" +
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"{ <"+individualURI+"> <" + RDFS.label.getURI() +
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"> ?ooo } \n" +
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" UNION { <"+individualURI+"> a ?type } \n" +
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" UNION { <"+individualURI+"> <" + VitroVocabulary.MONIKER + "> ?moniker } \n" +
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" UNION { <"+individualURI+"> <" + VitroVocabulary.MONIKER +
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"> ?moniker } \n" +
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"} ";
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this.model = QueryExecutionFactory.create(QueryFactory.create(getStatements), initModel).execConstruct();
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this.model = QueryExecutionFactory.create(
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QueryFactory.create(getStatements), initModel)
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.execConstruct();
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} finally {
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initModel.getLock().leaveCriticalSection();
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}
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OntModel ontModel = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM, model);
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OntModel ontModel = ModelFactory.createOntologyModel(
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OntModelSpec.OWL_MEM, model);
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this.ind = ontModel.createOntResource(individualURI);
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setUpURIParts(ind);
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this.webappDaoFactory = wadf;
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@ -120,23 +130,32 @@ public class IndividualSDB extends IndividualImpl implements Individual {
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dataset.getLock().enterCriticalSection(Lock.READ);
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String getStatements =
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"CONSTRUCT " +
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"{ <"+individualURI+"> <" + RDFS.label.getURI() + "> ?ooo. \n" +
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"{ <"+individualURI+"> <" + RDFS.label.getURI() +
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"> ?ooo. \n" +
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"<"+individualURI+"> a ?type . \n" +
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"<"+individualURI+"> <" + VitroVocabulary.MONIKER + "> ?moniker \n" +
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"<"+individualURI+"> <" + VitroVocabulary.MONIKER +
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"> ?moniker \n" +
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"} WHERE {" +
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"{ GRAPH ?g { \n" +
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"{ <"+individualURI+"> <" + RDFS.label.getURI() + "> ?ooo } \n" +
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"UNION { <"+individualURI+"> <" + VitroVocabulary.MONIKER + "> ?moniker } \n" +
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"{ <"+individualURI+"> <" + RDFS.label.getURI() +
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"> ?ooo } \n" +
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"UNION { <" +
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individualURI+"> <" + VitroVocabulary.MONIKER +
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"> ?moniker } \n" +
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"} \n" +
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"} UNION { GRAPH <http://vitro.mannlib.cornell.edu/default/vitro-kb-2> { <"+individualURI+"> a ?type } } \n" +
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"} UNION { GRAPH <http://vitro.mannlib.cornell.edu/default/vitro-kb-2> { <"
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+ individualURI + "> a ?type } } \n" +
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"}";
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model = QueryExecutionFactory.create(QueryFactory.create(getStatements), dataset).execConstruct();
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model = QueryExecutionFactory.create(
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QueryFactory.create(getStatements), dataset)
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.execConstruct();
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} finally {
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dataset.getLock().leaveCriticalSection();
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w.close();
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}
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OntModel ontModel = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM, model);
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OntModel ontModel = ModelFactory.createOntologyModel(
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OntModelSpec.OWL_MEM, model);
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this.ind = ontModel.createOntResource(individualURI);
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}
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@ -266,17 +285,20 @@ public class IndividualSDB extends IndividualImpl implements Individual {
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*/
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public boolean doesFlag1Match(int flagBitMask) {
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Long [] numerics = FlagMathUtils.numeric2numerics(flagBitMask);
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String Ask = null;
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DatasetWrapper w = getDatasetWrapper();
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Dataset dataset = w.getDataset();
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dataset.getLock().enterCriticalSection(Lock.READ);
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try{
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for( Long numericPortal : numerics){
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int portalid = FlagMathUtils.numeric2Portalid(numericPortal);
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String portalTypeUri = VitroVocabulary.vitroURI + "Flag1Value" + portalid + "Thing";
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Ask = "ASK { GRAPH ?g { <" + this.individualURI + "> <" +RDF.type+ "> <" + portalTypeUri +">} }";
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if(!QueryExecutionFactory.create(QueryFactory.create(Ask), dataset).execAsk())
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String portalTypeUri = VitroVocabulary.vitroURI +
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"Flag1Value" + portalid + "Thing";
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String Ask = "ASK { GRAPH ?g { <" + this.individualURI +
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"> <" +RDF.type+ "> <" + portalTypeUri +">} }";
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if(!QueryExecutionFactory.create(
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QueryFactory.create(Ask), dataset).execAsk()) {
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return false;
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}
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}
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}finally{
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dataset.getLock().leaveCriticalSection();
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@ -288,7 +310,8 @@ public class IndividualSDB extends IndividualImpl implements Individual {
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private void doFlag1() {
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String getObjects = null;
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Model tempModel = ModelFactory.createDefaultModel();
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OntModel ontModel = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
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OntModel ontModel = ModelFactory.createOntologyModel(
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OntModelSpec.OWL_MEM);
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DatasetWrapper w = getDatasetWrapper();
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Dataset dataset = w.getDataset();
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dataset.getLock().enterCriticalSection(Lock.READ);
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@ -298,19 +321,29 @@ public class IndividualSDB extends IndividualImpl implements Individual {
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String portalSet = "";
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try{
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getObjects =
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"CONSTRUCT{<" + this.individualURI + "> <" + RDF.type + "> ?object}" +
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"WHERE{ GRAPH ?g { <" + this.individualURI + "> <" + RDF.type + "> ?object} }";
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tempModel = QueryExecutionFactory.create(QueryFactory.create(getObjects), dataset).execConstruct();
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"CONSTRUCT{<" + this.individualURI + "> <" +
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RDF.type + "> ?object}" +
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"WHERE{ GRAPH ?g { <" + this.individualURI + "> <" +
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RDF.type + "> ?object} }";
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tempModel = QueryExecutionFactory.create(
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QueryFactory.create(
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getObjects), dataset).execConstruct();
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ontModel.add(tempModel.listStatements());
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OntResource ontRes = ontModel.createOntResource(this.individualURI);
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typeIt = ontRes.getOntModel().listStatements(ontRes, RDF.type ,(String) null);
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OntResource ontRes = ontModel.createOntResource(
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this.individualURI);
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typeIt = ontRes.getOntModel().listStatements(
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ontRes, RDF.type ,(String) null);
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while (typeIt.hasNext()) {
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Statement stmt = (Statement) typeIt.next();
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Resource type = (Resource)stmt.getObject();
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String typeName = type.getLocalName();
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if(type.getNameSpace() != null && type.getNameSpace().equals(VitroVocabulary.vitroURI) && typeName.indexOf("Flag1Value")==0) {
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if(type.getNameSpace() != null
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&& type.getNameSpace().equals(
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VitroVocabulary.vitroURI)
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&& typeName.indexOf("Flag1Value")==0) {
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try {
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int portalNumber = Integer.decode(typeName.substring(10,typeName.length()-5));
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int portalNumber = Integer.decode(
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typeName.substring(10,typeName.length()-5));
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portalNumeric = portalNumeric | (1 << portalNumber);
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if (portalSet.length() > 0) {
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portalSet+=",";
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@ -336,7 +369,8 @@ public class IndividualSDB extends IndividualImpl implements Individual {
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private void doFlag2() {
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String getObjects = null;
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Model tempModel = ModelFactory.createDefaultModel();
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OntModel ontModel = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
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OntModel ontModel = ModelFactory.createOntologyModel(
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OntModelSpec.OWL_MEM);
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DatasetWrapper w = getDatasetWrapper();
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Dataset dataset = w.getDataset();
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dataset.getLock().enterCriticalSection(Lock.READ);
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@ -345,19 +379,30 @@ public class IndividualSDB extends IndividualImpl implements Individual {
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String flagSet = "";
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try{
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getObjects =
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"CONSTRUCT{<" + this.individualURI + "> <" + RDF.type + "> ?object}" +
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"WHERE{ GRAPH ?g { <" + this.individualURI + "> <" + RDF.type + "> ?object} }";
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tempModel = QueryExecutionFactory.create(QueryFactory.create(getObjects), dataset).execConstruct();
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"CONSTRUCT{<" + this.individualURI + "> <" +
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RDF.type + "> ?object}" +
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"WHERE{ GRAPH ?g { <" + this.individualURI + "> <" +
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RDF.type + "> ?object} }";
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tempModel = QueryExecutionFactory.create(
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QueryFactory.create(
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getObjects), dataset).execConstruct();
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ontModel.add(tempModel.listStatements());
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OntResource ontRes = ontModel.createOntResource(this.individualURI);
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typeIt = ontRes.getOntModel().listStatements(ontRes, RDF.type ,(String) null);
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OntResource ontRes = ontModel.createOntResource(
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this.individualURI);
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typeIt = ontRes.getOntModel().listStatements(
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ontRes, RDF.type ,(String) null);
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while (typeIt.hasNext()) {
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Statement stmt = (Statement) typeIt.next();
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Resource type = (Resource)stmt.getObject();
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String typeName = type.getLocalName();
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if(type.getNameSpace() != null && type.getNameSpace().equals(VitroVocabulary.vitroURI) && typeName.indexOf("Flag2Value")==0) {
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if(type.getNameSpace() != null
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&& type.getNameSpace().equals(
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VitroVocabulary.vitroURI)
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&& typeName.indexOf("Flag2Value")==0) {
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try {
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String flagValue = ((WebappDaoFactoryJena)webappDaoFactory).getFlag2ClassLabelMap().get(type);
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String flagValue =
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((WebappDaoFactoryJena) webappDaoFactory)
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.getFlag2ClassLabelMap().get(type);
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if (flagSet.length() > 0) {
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flagSet+=",";
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}
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@ -385,7 +430,9 @@ public class IndividualSDB extends IndividualImpl implements Individual {
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ind.getOntModel().enterCriticalSection(Lock.READ);
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try {
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sunrise = webappDaoFactory.getJenaBaseDao().getPropertyDateTimeValue(ind,webappDaoFactory.getJenaBaseDao().SUNRISE);
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sunrise = webappDaoFactory.getJenaBaseDao()
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.getPropertyDateTimeValue(
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ind,webappDaoFactory.getJenaBaseDao().SUNRISE);
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return sunrise;
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} finally {
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@ -401,7 +448,9 @@ public class IndividualSDB extends IndividualImpl implements Individual {
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ind.getOntModel().enterCriticalSection(Lock.READ);
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try {
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sunset = webappDaoFactory.getJenaBaseDao().getPropertyDateTimeValue(ind,webappDaoFactory.getJenaBaseDao().SUNSET);
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sunset = webappDaoFactory.getJenaBaseDao()
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.getPropertyDateTimeValue(
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ind,webappDaoFactory.getJenaBaseDao().SUNSET);
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return sunset;
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} finally {
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@ -417,7 +466,9 @@ public class IndividualSDB extends IndividualImpl implements Individual {
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ind.getOntModel().enterCriticalSection(Lock.READ);
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try {
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timekey = webappDaoFactory.getJenaBaseDao().getPropertyDateTimeValue(ind,webappDaoFactory.getJenaBaseDao().TIMEKEY);
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timekey = webappDaoFactory.getJenaBaseDao()
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.getPropertyDateTimeValue(
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ind,webappDaoFactory.getJenaBaseDao().TIMEKEY);
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return timekey;
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} finally {
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@ -433,7 +484,9 @@ public class IndividualSDB extends IndividualImpl implements Individual {
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ind.getOntModel().enterCriticalSection(Lock.READ);
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try {
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Date modDate = webappDaoFactory.getJenaBaseDao().getPropertyDateTimeValue(ind,webappDaoFactory.getJenaBaseDao().MODTIME);
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Date modDate = webappDaoFactory.getJenaBaseDao()
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.getPropertyDateTimeValue(
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ind,webappDaoFactory.getJenaBaseDao().MODTIME);
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if (modDate != null) {
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modTime = new Timestamp(modDate.getTime());
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}
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@ -451,25 +504,39 @@ public class IndividualSDB extends IndividualImpl implements Individual {
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} else {
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ind.getOntModel().enterCriticalSection(Lock.READ);
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try {
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moniker = webappDaoFactory.getJenaBaseDao().getPropertyStringValue(ind,webappDaoFactory.getJenaBaseDao().MONIKER);
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moniker = webappDaoFactory.getJenaBaseDao()
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.getPropertyStringValue(
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ind,webappDaoFactory.getJenaBaseDao().MONIKER);
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if (moniker == null) {
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try {
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// trying to deal with the fact that an entity may have more than 1 VClass
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// trying to deal with the fact that an entity
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// may have more than 1 VClass
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List<VClass> clasList = this.getVClasses(true);
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if (clasList == null || clasList.size() < 2) {
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moniker = getVClass().getName();
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} else {
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VClass preferredClass = null;
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for (VClass clas : clasList) {
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if (clas.getCustomDisplayView() != null && clas.getCustomDisplayView().length()>0) {
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// arbitrarily deciding that the preferred class (could be >1) is one with a custom view
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if (clas.getCustomDisplayView() != null
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&& clas.getCustomDisplayView()
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.length()>0) {
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// arbitrarily deciding that the
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// preferred class (could be >1)
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// is one with a custom view
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preferredClass = clas;
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log.debug("Found direct class ["+clas.getName()+"] with custom view "+clas.getCustomDisplayView()+"; resetting entity vClass to this class");
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log.debug("Found direct class [" +
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clas.getName() +
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"] with custom view " +
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clas.getCustomDisplayView() +
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"; resetting entity vClass " +
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"to this class");
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}
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}
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if (preferredClass == null) {
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// no basis for selecting a preferred class name to use
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moniker = null; // was this.getVClass().getName();
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// no basis for selecting a preferred
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// class name to use
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moniker = null;
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// was this.getVClass().getName();
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} else {
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preferredClass.getName();
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}
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@ -478,75 +545,11 @@ public class IndividualSDB extends IndividualImpl implements Individual {
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}
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return moniker;
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} finally {
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ind.getOntModel().leaveCriticalSection();
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}
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}
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}
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/* 2009-01-27 hold off on individual-level filtering for now
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@Override
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public RoleLevel getHiddenFromDisplayBelowRoleLevel(){
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if( this.hiddenFromDisplayBelowRoleLevel != null )
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return this.hiddenFromDisplayBelowRoleLevel;
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OntModel model = ind.getOntModel();
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model.enterCriticalSection(Lock.READ);
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try {
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NodeIterator it = model.listObjectsOfProperty(ind, model.getAnnotationProperty(VitroVocabulary.HIDDEN_FROM_DISPLAY_BELOW_ROLE_LEVEL_ANNOT));
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if( it == null )
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return BaseResourceBean.RoleLevel.values()[0];
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BaseResourceBean.RoleLevel role = BaseResourceBean.RoleLevel.values()[0];
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while( it.hasNext() ) {
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RDFNode node = it.nextNode();
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if( node != null && node.isURIResource() ) {
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BaseResourceBean.RoleLevel foundRole = BaseResourceBean.RoleLevel.getRoleByUri( node.asNode().getURI() );
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if( role.compareTo(foundRole ) < 0 ) { // find the lowest of all levels
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role = foundRole;
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}
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}
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}
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return this.hiddenFromDisplayBelowRoleLevel = role;
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} finally {
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model.leaveCriticalSection();
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}
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}
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/**
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* this seems like a mismatch with the RDF storage model.
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* We could have multiple statements in the model that associated
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* the individual with multiple or redundant edit display levels.
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*/
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/*
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@Override
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public RoleLevel getProhibitedFromUpdateBelowRoleLevel() {
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if( this.prohibitedFromUpdateBelowRoleLevel != null )
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return this.prohibitedFromUpdateBelowRoleLevel;
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OntModel model = ind.getOntModel();
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model.enterCriticalSection(Lock.READ);
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try {
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NodeIterator it = model.listObjectsOfProperty(ind, model.getAnnotationProperty(VitroVocabulary.PROHIBITED_FROM_UPDATE_BELOW_ROLE_LEVEL_ANNOT));
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if( it == null )
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return BaseResourceBean.RoleLevel.values()[0];
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BaseResourceBean.RoleLevel role = BaseResourceBean.RoleLevel.values()[0];
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while( it.hasNext() ){
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RDFNode node = it.nextNode();
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if( node != null && node.isURIResource() ) {
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BaseResourceBean.RoleLevel foundRole = BaseResourceBean.RoleLevel.getRoleByUri( node.asNode().getURI() );
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if( role.compareTo(foundRole ) < 0 ) // find the lowest of all roles
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role = foundRole;
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}
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}
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return this.prohibitedFromUpdateBelowRoleLevel = role;
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} finally {
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model.leaveCriticalSection();
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}
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}
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*/
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public String getBlurb() {
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if (this.blurb != null) {
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return blurb;
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@ -570,7 +573,9 @@ public class IndividualSDB extends IndividualImpl implements Individual {
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ind.getOntModel().enterCriticalSection(Lock.READ);
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try {
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description = webappDaoFactory.getJenaBaseDao().getPropertyStringValue(ind,webappDaoFactory.getJenaBaseDao().DESCRIPTION);
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description = webappDaoFactory.getJenaBaseDao()
|
||||
.getPropertyStringValue(
|
||||
ind,webappDaoFactory.getJenaBaseDao().DESCRIPTION);
|
||||
return description;
|
||||
} finally {
|
||||
|
||||
|
|
@ -586,14 +591,18 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
}else{
|
||||
String getPropertyValue =
|
||||
"SELECT ?value" +
|
||||
"WHERE { GRAPH ?g { <" + individualURI + ">" + webappDaoFactory.getJenaBaseDao().SEARCH_BOOST_ANNOT + "?value} }";
|
||||
"WHERE { GRAPH ?g { <" + individualURI + ">" +
|
||||
webappDaoFactory.getJenaBaseDao().SEARCH_BOOST_ANNOT +
|
||||
"?value} }";
|
||||
DatasetWrapper w = getDatasetWrapper();
|
||||
Dataset dataset = w.getDataset();
|
||||
dataset.getLock().enterCriticalSection(Lock.READ);
|
||||
try{
|
||||
try {
|
||||
searchBoost =
|
||||
((Literal)QueryExecutionFactory.create(QueryFactory.create(getPropertyValue), dataset).execSelect()).getFloat();
|
||||
((Literal)QueryExecutionFactory.create(
|
||||
QueryFactory.create(getPropertyValue), dataset)
|
||||
.execSelect()).getFloat();
|
||||
} catch (Exception e) {
|
||||
searchBoost = null;
|
||||
}
|
||||
|
|
@ -624,7 +633,8 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
@Override
|
||||
public String getImageUrl() {
|
||||
if (this.imageInfo == null) {
|
||||
this.imageInfo = ImageInfo.instanceFromEntityUri(webappDaoFactory, this);
|
||||
this.imageInfo = ImageInfo.instanceFromEntityUri(
|
||||
webappDaoFactory, this);
|
||||
log.trace("figured imageInfo for " + getURI() + ": '"
|
||||
+ this.imageInfo + "'");
|
||||
}
|
||||
|
|
@ -638,7 +648,8 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
@Override
|
||||
public String getThumbUrl() {
|
||||
if (this.imageInfo == null) {
|
||||
this.imageInfo = ImageInfo.instanceFromEntityUri(webappDaoFactory, this);
|
||||
this.imageInfo = ImageInfo.instanceFromEntityUri(
|
||||
webappDaoFactory, this);
|
||||
log.trace("figured imageInfo for " + getURI() + ": '"
|
||||
+ this.imageInfo + "'");
|
||||
}
|
||||
|
|
@ -713,9 +724,10 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
return this.linksList;
|
||||
} else {
|
||||
try {
|
||||
webappDaoFactory.getLinksDao().addLinksToIndividual( this );
|
||||
webappDaoFactory.getLinksDao().addLinksToIndividual(this);
|
||||
} catch (Exception e) {
|
||||
log.debug(this.getClass().getName()+" could not addLinksToIndividual for "+this.getURI());
|
||||
log.debug(this.getClass().getName() +
|
||||
" could not addLinksToIndividual for " + this.getURI());
|
||||
}
|
||||
return this.linksList;
|
||||
}
|
||||
|
|
@ -726,9 +738,11 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
return this.primaryLink;
|
||||
} else {
|
||||
try {
|
||||
webappDaoFactory.getLinksDao().addPrimaryLinkToIndividual( this );
|
||||
webappDaoFactory.getLinksDao().addPrimaryLinkToIndividual(this);
|
||||
} catch (Exception e) {
|
||||
log.debug(this.getClass().getName()+" could not addPrimaryLinkToIndividual for "+this.getURI());
|
||||
log.debug(this.getClass().getName() +
|
||||
" could not addPrimaryLinkToIndividual for " +
|
||||
this.getURI());
|
||||
}
|
||||
return this.primaryLink;
|
||||
}
|
||||
|
|
@ -740,9 +754,11 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
return this.keywords;
|
||||
} else {
|
||||
try {
|
||||
this.setKeywords(webappDaoFactory.getIndividualDao().getKeywordsForIndividual(this.getURI()));
|
||||
this.setKeywords(webappDaoFactory.getIndividualDao()
|
||||
.getKeywordsForIndividual(this.getURI()));
|
||||
} catch (Exception e) {
|
||||
log.debug(this.getClass().getName()+" could not getKeywords for "+this.getURI());
|
||||
log.debug(this.getClass().getName() +
|
||||
" could not getKeywords for " + this.getURI());
|
||||
}
|
||||
return this.keywords;
|
||||
}
|
||||
|
|
@ -753,9 +769,11 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
return this.keywordObjects;
|
||||
} else {
|
||||
try {
|
||||
this.setKeywordObjects(webappDaoFactory.getIndividualDao().getKeywordObjectsForIndividual(this.getURI()));
|
||||
this.setKeywordObjects(webappDaoFactory.getIndividualDao()
|
||||
.getKeywordObjectsForIndividual(this.getURI()));
|
||||
} catch (Exception e) {
|
||||
log.error(this.getClass().getName()+" could not get Keyword Objects for "+this.getURI());
|
||||
log.error(this.getClass().getName() +
|
||||
" could not get Keyword Objects for " + this.getURI());
|
||||
}
|
||||
}
|
||||
return this.keywordObjects;
|
||||
|
|
@ -766,14 +784,12 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
return this.objectPropertyStatements;
|
||||
} else {
|
||||
try {
|
||||
webappDaoFactory.getObjectPropertyStatementDao().fillExistingObjectPropertyStatements(this);
|
||||
//Iterator stmtIt = this.getObjectPropertyStatements().iterator();
|
||||
//while (stmtIt.hasNext()) {
|
||||
// ObjectPropertyStatement stmt = (ObjectPropertyStatement) stmtIt.next();
|
||||
// stmt.setObject(webappDaoFactory.getIndividualDao().getIndividualByURI(stmt.getObject().getURI()));
|
||||
//}
|
||||
webappDaoFactory.getObjectPropertyStatementDao()
|
||||
.fillExistingObjectPropertyStatements(this);
|
||||
} catch (Exception e) {
|
||||
log.error(this.getClass().getName()+" could not fill existing ObjectPropertyStatements for "+this.getURI(), e);
|
||||
log.error(this.getClass().getName() +
|
||||
" could not fill existing ObjectPropertyStatements for "
|
||||
+ this.getURI(), e);
|
||||
}
|
||||
return this.objectPropertyStatements;
|
||||
}
|
||||
|
|
@ -784,10 +800,11 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
if (propertyURI == null) {
|
||||
return null;
|
||||
}
|
||||
List<ObjectPropertyStatement> objectPropertyStatements = new ArrayList<ObjectPropertyStatement>();
|
||||
|
||||
List<ObjectPropertyStatement> objectPropertyStatements = new ArrayList
|
||||
<ObjectPropertyStatement>();
|
||||
Model tempModel = ModelFactory.createDefaultModel();
|
||||
OntModel ontModel = ModelFactory.createOntologyModel(OntModelSpec.OWL_MEM);
|
||||
OntModel ontModel = ModelFactory.createOntologyModel(
|
||||
OntModelSpec.OWL_MEM);
|
||||
DatasetWrapper w = getDatasetWrapper();
|
||||
Dataset dataset = w.getDataset();
|
||||
dataset.getLock().enterCriticalSection(Lock.READ);
|
||||
|
|
@ -840,15 +857,21 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
try {
|
||||
String valuesOfProperty =
|
||||
"SELECT ?object" +
|
||||
"WHERE{ GRAPH ?g { <" + this.individualURI + "> <" + propertyURI + "> ?object} }";
|
||||
ResultSet values = QueryExecutionFactory.create(QueryFactory.create(valuesOfProperty), dataset).execSelect();
|
||||
"WHERE{ GRAPH ?g { <" + this.individualURI + "> <" +
|
||||
propertyURI + "> ?object} }";
|
||||
ResultSet values = QueryExecutionFactory.create(
|
||||
QueryFactory.create(valuesOfProperty), dataset)
|
||||
.execSelect();
|
||||
QuerySolution result = null;
|
||||
while (values.hasNext()) {
|
||||
result = values.next();
|
||||
RDFNode value = result.get("object");
|
||||
if (value.canAs(OntResource.class)) {
|
||||
relatedIndividuals.add(
|
||||
new IndividualSDB(((OntResource) value.as(OntResource.class)).getURI(), this.dwf, webappDaoFactory) );
|
||||
new IndividualSDB(
|
||||
((OntResource) value.as(OntResource.class))
|
||||
.getURI(),
|
||||
this.dwf, webappDaoFactory) );
|
||||
}
|
||||
}
|
||||
} finally {
|
||||
|
|
@ -869,12 +892,16 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
try {
|
||||
String valueOfProperty =
|
||||
"SELECT ?object" +
|
||||
"WHERE{ GRAPH ?g { <" + this.individualURI + "> <" + propertyURI + "> ?object} }";
|
||||
ResultSet results = QueryExecutionFactory.create(QueryFactory.create(valueOfProperty), dataset).execSelect();
|
||||
"WHERE{ GRAPH ?g { <" + this.individualURI + "> <" +
|
||||
propertyURI + "> ?object} }";
|
||||
ResultSet results = QueryExecutionFactory.create(
|
||||
QueryFactory.create(valueOfProperty), dataset).execSelect();
|
||||
QuerySolution result = results.next();
|
||||
RDFNode value = result.get("object");
|
||||
if (value != null && value.canAs(OntResource.class)) {
|
||||
return new IndividualSDB(((OntResource) value.as(OntResource.class)).getURI(), dwf, webappDaoFactory);
|
||||
return new IndividualSDB(
|
||||
((OntResource) value.as(OntResource.class)).getURI(),
|
||||
dwf, webappDaoFactory);
|
||||
} else {
|
||||
return null;
|
||||
}
|
||||
|
|
@ -889,9 +916,11 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
return this.propertyList;
|
||||
} else {
|
||||
try {
|
||||
webappDaoFactory.getObjectPropertyDao().fillObjectPropertiesForIndividual( this );
|
||||
webappDaoFactory.getObjectPropertyDao()
|
||||
.fillObjectPropertiesForIndividual( this );
|
||||
} catch (Exception e) {
|
||||
log.error(this.getClass().getName()+" could not fillEntityProperties for "+this.getURI());
|
||||
log.error(this.getClass().getName() +
|
||||
" could not fillEntityProperties for " + this.getURI());
|
||||
}
|
||||
return this.propertyList;
|
||||
}
|
||||
|
|
@ -900,7 +929,8 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
@Override
|
||||
public List<ObjectProperty> getPopulatedObjectPropertyList() {
|
||||
if (populatedObjectPropertyList == null) {
|
||||
populatedObjectPropertyList = webappDaoFactory.getObjectPropertyDao().getObjectPropertyList(this);
|
||||
populatedObjectPropertyList = webappDaoFactory
|
||||
.getObjectPropertyDao().getObjectPropertyList(this);
|
||||
}
|
||||
return populatedObjectPropertyList;
|
||||
}
|
||||
|
|
@ -930,9 +960,12 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
return this.dataPropertyStatements;
|
||||
} else {
|
||||
try {
|
||||
webappDaoFactory.getDataPropertyStatementDao().fillExistingDataPropertyStatementsForIndividual(this/*,false*/);
|
||||
webappDaoFactory.getDataPropertyStatementDao()
|
||||
.fillExistingDataPropertyStatementsForIndividual(this);
|
||||
} catch (Exception e) {
|
||||
log.error(this.getClass().getName()+" could not fill existing DataPropertyStatements for "+this.getURI());
|
||||
log.error(this.getClass().getName() +
|
||||
" could not fill existing DataPropertyStatements for "
|
||||
+ this.getURI());
|
||||
}
|
||||
return this.dataPropertyStatements;
|
||||
}
|
||||
|
|
@ -943,9 +976,11 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
return this.datatypePropertyList;
|
||||
} else {
|
||||
try {
|
||||
webappDaoFactory.getDataPropertyDao().fillDataPropertiesForIndividual( this );
|
||||
webappDaoFactory.getDataPropertyDao()
|
||||
.fillDataPropertiesForIndividual( this );
|
||||
} catch (Exception e) {
|
||||
log.error(this.getClass().getName()+" could not fill data properties for "+this.getURI());
|
||||
log.error(this.getClass().getName() +
|
||||
" could not fill data properties for " + this.getURI());
|
||||
}
|
||||
return this.datatypePropertyList;
|
||||
}
|
||||
|
|
@ -954,7 +989,8 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
@Override
|
||||
public List<DataProperty> getPopulatedDataPropertyList() {
|
||||
if (populatedDataPropertyList == null) {
|
||||
populatedDataPropertyList = webappDaoFactory.getDataPropertyDao().getDataPropertyList(this);
|
||||
populatedDataPropertyList = webappDaoFactory.getDataPropertyDao()
|
||||
.getDataPropertyList(this);
|
||||
}
|
||||
return populatedDataPropertyList;
|
||||
}
|
||||
|
|
@ -980,16 +1016,18 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
}
|
||||
|
||||
public List<DataPropertyStatement> getExternalIds() {
|
||||
// BJL 2007-11-11: need to decide whether we want to use Collections or Lists in our interfaces - we seem to be leaning toward Lists
|
||||
if (this.externalIds != null) {
|
||||
return this.externalIds;
|
||||
} else {
|
||||
try {
|
||||
List<DataPropertyStatement> dpsList = new ArrayList<DataPropertyStatement>();
|
||||
dpsList.addAll(webappDaoFactory.getIndividualDao().getExternalIds(this.getURI(), null));
|
||||
List<DataPropertyStatement> dpsList =
|
||||
new ArrayList<DataPropertyStatement>();
|
||||
dpsList.addAll(webappDaoFactory.getIndividualDao()
|
||||
.getExternalIds(this.getURI(), null));
|
||||
this.externalIds = dpsList;
|
||||
} catch (Exception e) {
|
||||
log.error(this.getClass().getName()+" could not fill external IDs for "+this.getURI());
|
||||
log.error(this.getClass().getName() +
|
||||
" could not fill external IDs for " + this.getURI());
|
||||
}
|
||||
return this.externalIds;
|
||||
}
|
||||
|
|
@ -1027,8 +1065,12 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
}
|
||||
else {
|
||||
String getTypes =
|
||||
"CONSTRUCT{ <" + this.individualURI + "> <" + RDF.type + "> ?types }\n" +
|
||||
"WHERE{ GRAPH " + ((true) ? "<http://vitro.mannlib.cornell.edu/default/vitro-kb-2>" : "?g")
|
||||
"CONSTRUCT{ <" + this.individualURI + "> <" + RDF.type +
|
||||
"> ?types }\n" +
|
||||
"WHERE{ GRAPH " +
|
||||
((true)
|
||||
? "<http://vitro.mannlib.cornell.edu/default/vitro-kb-2>"
|
||||
: "?g")
|
||||
+ " { <" + this.individualURI +"> <" +RDF.type+ "> ?types \n" +
|
||||
"} } \n";
|
||||
DatasetWrapper w = getDatasetWrapper();
|
||||
|
|
@ -1137,7 +1179,8 @@ public class IndividualSDB extends IndividualImpl implements Individual {
|
|||
|
||||
VClassDao vclassDao = webappDaoFactory.getVClassDao();
|
||||
for (VClass vClass : getVClasses(true)) {
|
||||
for (String superClassUri: vclassDao.getAllSuperClassURIs(vClass.getURI())) {
|
||||
for (String superClassUri: vclassDao.getAllSuperClassURIs(
|
||||
vClass.getURI())) {
|
||||
if (uri.equals(superClassUri)) {
|
||||
return true;
|
||||
}
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue