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label management and concept semantic type

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This commit is contained in:
hudajkhan 2013-09-04 12:22:46 -04:00
parent 3314e5a4b0
commit 9ec7d11cab
5 changed files with 53 additions and 48 deletions
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36
webapp/src/edu/cornell/mannlib/vitro/webapp/edit/n3editing/configuration/preprocessors/ConceptSparqlUpdatePreprocessor.java → webapp/src/edu/cornell/mannlib/vitro/webapp/edit/n3editing/configuration/preprocessors/ConceptSemanticTypesPreprocessor.java
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@ -34,36 +34,35 @@ import edu.cornell.mannlib.vitro.webapp.dao.jena.DatasetWrapperFactory;
//We are representing semantic types from the UMLS Semantic Network as OWL Classes
//and this preprocessor will add the appropriate class information to the TBox
public class ConceptSparqlUpdatePreprocessor implements ModelChangePreprocessor {
public class ConceptSemanticTypesPreprocessor implements ModelChangePreprocessor {
private static String VIVOCore = "http://vivoweb.org/ontology/core#";
private static String SKOSConceptType = "http://www.w3.org/2004/02/skos/core#Concept";
private Log log = LogFactory.getLog(ConceptSparqlUpdatePreprocessor.class);
private Log log = LogFactory.getLog(ConceptSemanticTypesPreprocessor.class);
private OntModel toUpdateModel = null;
private DatasetWrapperFactory dwf = null;
//Custom constructor
public ConceptSparqlUpdatePreprocessor(OntModel updateModel, DatasetWrapperFactory inputDwf) {
public ConceptSemanticTypesPreprocessor(OntModel updateModel) {
this.toUpdateModel = updateModel;
this.dwf = inputDwf;
}
@Override
public void preprocess(Model retractionsModel, Model additionsModel,
HttpServletRequest request) {
//Run a construct query against the additions model
String prefixes = "PREFIX RDFS:<" + RDFS.getURI() + "> " +
"PREFIX OWL:<http://www.w3.org/2002/07/owl#> " +
"PREFIX RDF:<" + RDF.getURI() + ">";
String prefixes = "PREFIX rdfs:<" + RDFS.getURI() + "> " +
"PREFIX owl:<http://www.w3.org/2002/07/owl#> " +
"PREFIX rdf:<" + RDF.getURI() + ">" +
"PREFIX skos:<http://www.w3.org/2004/02/skos/core#>";
String constructQuery = prefixes + " CONSTRUCT { " +
"?semanticType rdf:type OWL:Class. { " +
"?semanticType rdfs:subClassOf SKOS:Concept . { " +
"?semanticType rdfs:label ?label. { " +
"?semanticType rdf:type owl:Class. " +
"?semanticType rdfs:subClassOf skos:Concept . " +
"?semanticType rdfs:label ?label. " +
"} WHERE { " +
"?concept rdf:type ?semanticType. { " +
"?semanticType rdfs:label ?label .{ " +
"?semanticType rdfs:subClassOf SKOS:Concept .{ " +
"?concept rdf:type ?semanticType. " +
"?semanticType rdfs:label ?label . " +
"?semanticType rdfs:subClassOf skos:Concept . " +
"}";
//Execute construct query
@ -84,13 +83,11 @@ public class ConceptSparqlUpdatePreprocessor implements ModelChangePreprocessor
DatasetWrapper w = dwf.getDatasetWrapper();
Dataset dataset = w.getDataset();
dataset.getLock().enterCriticalSection(Lock.READ);
additionsModel.getLock().enterCriticalSection(Lock.READ);
QueryExecution qe = null;
try {
qe = QueryExecutionFactory.create(
query, dataset);
query, additionsModel);
qe.execConstruct(constructedModel);
} catch (Exception e) {
log.error("Error getting constructed model for query string " + constructQuery);
@ -98,8 +95,7 @@ public class ConceptSparqlUpdatePreprocessor implements ModelChangePreprocessor
if (qe != null) {
qe.close();
}
dataset.getLock().leaveCriticalSection();
w.close();
additionsModel.getLock().leaveCriticalSection();
}
//Add constructed model to the designated update model