From bd6140a8cccc97726700f5a37541888c3b5fef41 Mon Sep 17 00:00:00 2001 From: gneissone Date: Thu, 25 Apr 2019 14:51:38 -0700 Subject: [PATCH] Remove trailing whitespace throughout project --- .../mannlib/semservices/bo/Concept.java | 4 +- .../mannlib/semservices/util/SKOSUtils.java | 2 +- .../mannlib/vedit/beans/ButtonForm.java | 12 +- .../vedit/beans/EditProcessObject.java | 8 +- .../cornell/mannlib/vedit/beans/Option.java | 2 +- .../vedit/controller/BaseEditController.java | 28 +- .../vedit/controller/EditFrontController.java | 8 +- .../vedit/controller/OperationController.java | 68 +- .../cornell/mannlib/vedit/util/FormUtils.java | 110 +-- .../mannlib/vedit/util/OperationUtils.java | 2 +- .../cornell/mannlib/vedit/util/Stemmer.java | 4 +- .../vedit/validator/impl/IntValidator.java | 2 +- .../application/VitroHomeDirectory.java | 8 +- .../ActiveIdentifierBundleFactories.java | 4 +- .../identifier/ArrayIdentifierBundle.java | 2 +- .../webapp/auth/identifier/Identifier.java | 20 +- .../auth/identifier/IdentifierBundle.java | 2 +- .../auth/identifier/RequestIdentifiers.java | 2 +- .../auth/identifier/RoleIdentifier.java | 6 +- .../common/HasAssociatedIndividual.java | 2 +- .../identifier/common/HasPermissionSet.java | 2 +- .../auth/identifier/common/IsBlacklisted.java | 8 +- .../HasProfileOrIsBlacklistedFactory.java | 2 +- .../auth/permissions/PermissionRegistry.java | 6 +- .../permissions/PermissionSetsSmokeTest.java | 4 +- .../auth/permissions/SimplePermission.java | 6 +- .../auth/policy/BasicPolicyDecision.java | 4 +- .../auth/policy/CompositPolicyDecision.java | 6 +- .../DisplayRestrictedDataToSelfPolicy.java | 4 +- .../auth/policy/PolicyDecisionLogger.java | 6 +- .../webapp/auth/policy/PolicyHelper.java | 24 +- .../vitro/webapp/auth/policy/PolicyList.java | 10 +- .../webapp/auth/policy/RequestPolicyList.java | 4 +- .../webapp/auth/policy/RootUserPolicy.java | 4 +- .../webapp/auth/policy/ServletPolicyList.java | 4 +- .../policy/bean/PropertyRestrictionBean.java | 14 +- .../bean/PropertyRestrictionBeanImpl.java | 22 +- .../bean/PropertyRestrictionLevels.java | 2 +- .../auth/policy/ifaces/PolicyDecision.java | 2 +- .../RelationshipChecker.java | 22 +- .../requestedAction/AuthorizationRequest.java | 2 +- .../SimpleRequestedAction.java | 2 +- .../ifaces/RequiresActions.java | 22 +- .../ifaces/SingleParameterAction.java | 2 +- .../AbstractDataPropertyStatementAction.java | 4 +- .../AbstractPropertyStatementAction.java | 2 +- .../vitro/webapp/beans/ApplicationBean.java | 34 +- .../vitro/webapp/beans/BaseResourceBean.java | 58 +- .../vitro/webapp/beans/Classes2Classes.java | 2 +- .../vitro/webapp/beans/DataProperty.java | 26 +- .../webapp/beans/DataPropertyComparator.java | 20 +- .../webapp/beans/DataPropertyStatement.java | 6 +- .../beans/DataPropertyStatementImpl.java | 8 +- .../vitro/webapp/beans/DisplayMessage.java | 12 +- .../vitro/webapp/beans/FauxProperty.java | 2 +- .../vitro/webapp/beans/Individual.java | 32 +- .../vitro/webapp/beans/IndividualImpl.java | 50 +- .../vitro/webapp/beans/ObjectProperty.java | 104 +- .../webapp/beans/ObjectPropertyStatement.java | 2 +- .../beans/ObjectPropertyStatementImpl.java | 14 +- .../mannlib/vitro/webapp/beans/Ontology.java | 14 +- .../mannlib/vitro/webapp/beans/Property.java | 58 +- .../vitro/webapp/beans/PropertyGroup.java | 28 +- .../vitro/webapp/beans/PropertyInstance.java | 2 +- .../vitro/webapp/beans/ResourceBean.java | 26 +- .../beans/SelfEditingConfiguration.java | 8 +- .../vitro/webapp/beans/UserAccount.java | 4 +- .../mannlib/vitro/webapp/beans/VClass.java | 26 +- .../vitro/webapp/beans/VClassGroup.java | 18 +- .../config/ConfigurationProperties.java | 2 +- .../config/ConfigurationPropertiesImpl.java | 6 +- .../ConfigurationPropertiesSmokeTests.java | 2 +- .../vitro/webapp/config/RevisionInfoBean.java | 12 +- .../webapp/config/RevisionInfoSetup.java | 14 +- .../controller/AbstractPageHandler.java | 6 +- .../vitro/webapp/controller/Controllers.java | 18 +- .../DashboardPropertyListController.java | 44 +- .../webapp/controller/MailUsersServlet.java | 20 +- .../controller/MultipartRequestWrapper.java | 12 +- .../webapp/controller/OntologyController.java | 104 +- .../controller/SparqlQueryBuilderServlet.java | 12 +- .../webapp/controller/VitroHttpServlet.java | 26 +- .../vitro/webapp/controller/VitroRequest.java | 96 +- .../controller/accounts/UserAccountsPage.java | 2 +- .../UserAccountsSelectionCriteria.java | 2 +- .../accounts/admin/UserAccountsAddPage.java | 6 +- .../accounts/admin/UserAccountsListPage.java | 2 +- .../admin/UserAccountsProfileCreator.java | 2 +- .../admin/ajax/ExternalAuthChecker.java | 8 +- .../admin/ajax/ProfileAutoCompleter.java | 8 +- .../ManageProxiesController.java | 10 +- .../ManageProxiesCreatePage.java | 8 +- .../manageproxies/ProxyRelationship.java | 2 +- .../ProxyRelationshipSelectionBuilder.java | 4 +- .../ProxyRelationshipSelectionCriteria.java | 4 +- .../ajax/BasicProfilesGetter.java | 2 +- .../manageproxies/ajax/MoreProxyInfo.java | 2 +- .../UserAccountsFirstTimeExternalPage.java | 2 +- ...AccountsFirstTimeExternalPageStrategy.java | 2 +- .../user/UserAccountsUserController.java | 2 +- .../admin/RestrictLoginsController.java | 2 +- .../ShowBackgroundThreadsController.java | 2 +- .../admin/ShowSourcesController.java | 32 +- .../WaitForBackgroundThreadsController.java | 8 +- .../ajax/AbstractAjaxResponder.java | 2 +- .../ajax/SparqlQueryAjaxController.java | 4 +- .../webapp/controller/ajax/SparqlUtils.java | 2 +- .../controller/ajax/VitroAjaxController.java | 4 +- .../api/SparqlQueryApiController.java | 4 +- .../api/SparqlUpdateApiController.java | 4 +- .../controller/api/VitroApiServlet.java | 2 +- .../api/sparqlquery/RdfResultMediaType.java | 4 +- .../SparqlQueryApiAskExecutor.java | 2 +- .../sparqlquery/SparqlQueryApiExecutor.java | 2 +- .../authenticate/AdminLoginController.java | 4 +- .../authenticate/Authenticator.java | 18 +- .../authenticate/BaseLoginServlet.java | 6 +- .../authenticate/BasicAuthenticator.java | 2 +- .../authenticate/ExternalAuthHelper.java | 4 +- .../FakeExternalAuthController.java | 6 +- .../authenticate/LoginExternalAuthReturn.java | 12 +- .../authenticate/LoginExternalAuthSetup.java | 4 +- .../authenticate/LoginInProcessFlag.java | 10 +- .../authenticate/LogoutRedirector.java | 2 +- .../controller/authenticate/ProgramLogin.java | 2 +- .../authenticate/RestrictedAuthenticator.java | 2 +- .../dumprestore/DumpModelsAction.java | 6 +- .../datatools/dumprestore/DumpParser.java | 2 +- .../dumprestore/DumpRestoreController.java | 4 +- .../dumprestore/NQuadLineSplitter.java | 4 +- .../dumprestore/RestoreModelsAction.java | 6 +- .../edit/ApplicationBeanRetryController.java | 26 +- .../webapp/controller/edit/Authenticate.java | 16 +- .../Classes2ClassesOperationController.java | 12 +- .../edit/Classes2ClassesRetryController.java | 2 +- .../edit/ClassgroupRetryController.java | 6 +- .../DataPropertyStatementRetryController.java | 8 +- .../edit/DatapropEditController.java | 42 +- .../edit/DatapropRetryController.java | 30 +- .../edit/DatatypeRetryController.java | 2 +- .../controller/edit/DeletePageController.java | 52 +- .../controller/edit/EntityEditController.java | 28 +- .../edit/EntityRetryController.java | 22 +- .../IndividualTypeOperationController.java | 8 +- .../edit/IndividualTypeRetryController.java | 32 +- .../vitro/webapp/controller/edit/Logout.java | 2 +- .../controller/edit/MenuManagementEdit.java | 64 +- .../edit/N3MultiPartUploadDELETEME.java | 2 +- .../NamespacePrefixOperationController.java | 32 +- .../edit/NamespacePrefixRetryController.java | 10 +- ...bjectPropertyStatementRetryController.java | 6 +- .../edit/OntologyEditController.java | 4 +- .../edit/OntologyRetryController.java | 4 +- .../controller/edit/PrimitiveDelete.java | 10 +- .../controller/edit/PrimitiveRdfEdit.java | 38 +- ...perties2PropertiesOperationController.java | 36 +- .../Properties2PropertiesRetryController.java | 26 +- .../edit/PropertyEditController.java | 56 +- .../edit/PropertyGroupRetryController.java | 4 +- .../edit/PropertyRetryController.java | 68 +- .../edit/RefactorOperationController.java | 136 +-- .../edit/RefactorRetryController.java | 28 +- .../controller/edit/ReorderController.java | 44 +- .../edit/RestrictionOperationController.java | 82 +- .../edit/RestrictionRetryController.java | 36 +- .../controller/edit/VclassEditController.java | 36 +- .../edit/VclassRetryController.java | 12 +- .../AllClassGroupsListingController.java | 6 +- ...ataPropertyStatementListingController.java | 28 +- .../listing/IndividualsListingController.java | 12 +- .../listing/ListingControllerWebUtils.java | 8 +- ...ectPropertyStatementListingController.java | 38 +- .../listing/OntologiesListingController.java | 2 +- .../PropertyGroupsListingController.java | 28 +- ...sWebappWithInstancesListingController.java | 2 +- .../jena/NamespacesListingController.java | 16 +- .../jena/RestrictionsListingController.java | 36 +- .../edit/utils/LocalNamespaceClassUtils.java | 16 +- .../edit/utils/RoleLevelOptionsSetup.java | 6 +- .../freemarker/AboutController.java | 10 +- .../freemarker/BaseSiteAdminController.java | 60 +- .../freemarker/BrowseController.java | 14 +- .../freemarker/ContactFormController.java | 28 +- .../freemarker/ContactMailController.java | 108 +-- .../freemarker/DeletePropertyController.java | 68 +- .../freemarker/DelimitingTemplateLoader.java | 4 +- .../freemarker/DumpTestController.java | 74 +- .../FreemarkerComponentGenerator.java | 20 +- .../freemarker/FreemarkerHttpServlet.java | 228 ++--- .../freemarker/FreemarkerSetup.java | 8 +- .../freemarker/HomePageController.java | 26 +- .../freemarker/ImageUploadController.java | 10 +- .../freemarker/ImageUploadHelper.java | 12 +- .../freemarker/IndividualListController.java | 112 +-- .../IndividualListQueryResults.java | 2 +- .../freemarker/ListClassGroupsController.java | 18 +- .../ListDatatypePropertiesController.java | 18 +- .../ListFauxPropertiesController.java | 56 +- .../ListPropertyGroupsController.java | 16 +- .../ListPropertyWebappsController.java | 18 +- .../ListVClassWebappsController.java | 12 +- .../ManageLabelsForIndividualController.java | 22 +- .../controller/freemarker/PageController.java | 120 +-- .../freemarker/RevisionInfoController.java | 8 +- .../freemarker/SamplesController.java | 32 +- .../ShowClassHierarchyController.java | 30 +- .../ShowDataPropertyHierarchyController.java | 42 +- ...ShowObjectPropertyHierarchyController.java | 58 +- .../SimpleReasonerRecomputeController.java | 44 +- .../freemarker/SiteAdminController.java | 2 +- .../freemarker/StaticPageController.java | 10 +- .../freemarker/TemplateProcessingHelper.java | 34 +- .../freemarker/TermsOfUseController.java | 16 +- .../controller/freemarker/TestController.java | 8 +- .../controller/freemarker/UrlBuilder.java | 138 +-- .../freemarker/ViewLabelsServlet.java | 84 +- .../responsevalues/BaseResponseValues.java | 14 +- .../DirectRedirectResponseValues.java | 12 +- .../ExceptionResponseValues.java | 6 +- .../responsevalues/RdfResponseValues.java | 4 +- .../RedirectResponseValues.java | 18 +- .../responsevalues/ResponseValues.java | 10 +- .../TemplateResponseValues.java | 8 +- .../grefine/GrefineMqlreadServlet.java | 12 +- .../grefine/GrefinePropertyListServlet.java | 52 +- .../grefine/JSONReconcileServlet.java | 84 +- .../individual/ExtendedRdfAssembler.java | 80 +- .../individual/IndividualController.java | 2 +- .../individual/IndividualRdfAssembler.java | 18 +- .../IndividualRequestAnalysisContext.java | 2 +- .../IndividualRequestAnalysisContextImpl.java | 6 +- .../individual/IndividualRequestAnalyzer.java | 58 +- .../individual/IndividualResponseBuilder.java | 84 +- .../individual/IndividualTemplateLocator.java | 32 +- .../individuallist/IndividualJsonWrapper.java | 2 +- .../individuallist/IndividualListResults.java | 4 +- .../IndividualListResultsUtils.java | 4 +- .../controller/jena/JenaAdminActions.java | 34 +- .../jena/JenaCsv2RdfController.java | 46 +- .../controller/jena/JenaExportController.java | 74 +- .../controller/jena/JenaIngestController.java | 226 ++--- .../controller/jena/JenaXMLFileUpload.java | 74 +- .../controller/jena/RDFUploadController.java | 194 ++-- .../jena/RDFUploadFormController.java | 2 +- .../controller/json/GetAllVClasses.java | 12 +- .../controller/json/GetEntitiesByVClass.java | 14 +- .../json/GetEntitiesByVClassContinuation.java | 4 +- .../GetRandomSearchIndividualsByVClass.java | 8 +- .../GetRenderedSearchIndividualsByVClass.java | 8 +- .../json/GetSearchIndividualsByVClass.java | 18 +- .../json/GetSearchIndividualsByVClasses.java | 8 +- .../json/GetVClassesForVClassGroup.java | 6 +- .../controller/json/JsonArrayProducer.java | 2 +- .../controller/json/JsonObjectProducer.java | 4 +- .../webapp/controller/json/JsonProducer.java | 8 +- .../webapp/controller/json/JsonServlet.java | 46 +- .../controller/login/LoginProcessBean.java | 10 +- .../vitro/webapp/dao/ApplicationDao.java | 8 +- .../vitro/webapp/dao/DataPropertyDao.java | 14 +- .../webapp/dao/DataPropertyStatementDao.java | 6 +- .../mannlib/vitro/webapp/dao/DatatypeDao.java | 2 +- .../vitro/webapp/dao/DisplayModelDao.java | 6 +- .../vitro/webapp/dao/DisplayVocabulary.java | 88 +- .../vitro/webapp/dao/FauxPropertyDao.java | 20 +- .../vitro/webapp/dao/IndividualDao.java | 16 +- .../vitro/webapp/dao/InsertException.java | 6 +- .../mannlib/vitro/webapp/dao/MenuDao.java | 2 +- .../vitro/webapp/dao/NewURIMakerVitro.java | 22 +- .../vitro/webapp/dao/ObjectPropertyDao.java | 18 +- .../dao/ObjectPropertyStatementDao.java | 26 +- .../mannlib/vitro/webapp/dao/OntologyDao.java | 2 +- .../mannlib/vitro/webapp/dao/PageDao.java | 10 +- .../mannlib/vitro/webapp/dao/PropertyDao.java | 4 +- .../vitro/webapp/dao/PropertyGroupDao.java | 14 +- .../vitro/webapp/dao/PropertyInstanceDao.java | 4 +- .../vitro/webapp/dao/UserAccountsDao.java | 26 +- .../mannlib/vitro/webapp/dao/VClassDao.java | 50 +- .../vitro/webapp/dao/VClassGroupDao.java | 2 +- .../webapp/dao/VClassGroupsForRequest.java | 2 +- .../vitro/webapp/dao/VitroVocabulary.java | 70 +- .../vitro/webapp/dao/WebappDaoFactory.java | 50 +- .../webapp/dao/WebappDaoFactoryConfig.java | 28 +- .../filtering/DataPropertyDaoFiltering.java | 28 +- .../dao/filtering/DataPropertyFiltering.java | 34 +- .../DataPropertyStatementDaoFiltering.java | 50 +- .../DataPropertyStatementFiltering.java | 18 +- .../filtering/FauxPropertyDaoFiltering.java | 6 +- .../FilteringPropertyInstanceDao.java | 42 +- .../dao/filtering/IndividualDaoFiltering.java | 68 +- .../dao/filtering/IndividualFiltering.java | 120 +-- .../filtering/ObjectPropertyDaoFiltering.java | 66 +- .../filtering/ObjectPropertyFiltering.java | 72 +- .../ObjectPropertyStatementDaoFiltering.java | 60 +- .../ObjectPropertyStatementFiltering.java | 4 +- .../filtering/PropertyGroupDaoFiltering.java | 28 +- .../filtering/UserAccountsDaoFiltering.java | 2 +- .../dao/filtering/VClassDaoFiltering.java | 54 +- .../filtering/VClassGroupDaoFiltering.java | 4 +- .../filtering/WebappDaoFactoryFiltering.java | 52 +- .../filters/EntityPropertyListFilter.java | 10 +- .../HideFromDisplayByPolicyFilter.java | 4 +- .../filtering/filters/VitroFilterUtils.java | 4 +- .../dao/filtering/filters/VitroFilters.java | 4 +- .../webapp/dao/jena/ApplicationDaoJena.java | 44 +- .../dao/jena/BlankNodeFilteringGraph.java | 12 +- .../jena/BlankNodeFilteringModelMaker.java | 8 +- .../dao/jena/BlankNodeStatementListener.java | 16 +- .../dao/jena/CumulativeDeltaModeler.java | 18 +- .../webapp/dao/jena/DataPropertyDaoJena.java | 156 +-- .../jena/DataPropertyStatementDaoJena.java | 120 +-- .../dao/jena/DataPropertyStatementDaoSDB.java | 20 +- .../vitro/webapp/dao/jena/DatasetWrapper.java | 10 +- .../dao/jena/DatasetWrapperFactory.java | 2 +- .../webapp/dao/jena/DatatypeDaoJena.java | 38 +- .../dao/jena/DependentResourceDeleteJena.java | 92 +- .../webapp/dao/jena/DifferenceGraph.java | 6 +- .../webapp/dao/jena/DisplayModelDaoJena.java | 48 +- .../vitro/webapp/dao/jena/GraphGenerator.java | 4 +- .../webapp/dao/jena/IndividualDaoJena.java | 186 ++-- .../webapp/dao/jena/IndividualDaoSDB.java | 194 ++-- .../vitro/webapp/dao/jena/IndividualJena.java | 72 +- .../vitro/webapp/dao/jena/IndividualSDB.java | 322 +++---- .../vitro/webapp/dao/jena/JenaBaseDao.java | 196 ++-- .../vitro/webapp/dao/jena/JenaBaseDaoCon.java | 38 +- .../vitro/webapp/dao/jena/JenaModelUtils.java | 112 +-- .../vitro/webapp/dao/jena/LoginEvent.java | 6 +- .../webapp/dao/jena/LoginLogoutEvent.java | 2 +- .../vitro/webapp/dao/jena/LogoutEvent.java | 8 +- .../vitro/webapp/dao/jena/MenuDaoJena.java | 56 +- .../vitro/webapp/dao/jena/ModelContext.java | 14 +- .../dao/jena/ObjectPropertyDaoJena.java | 200 ++-- .../jena/ObjectPropertyStatementDaoJena.java | 122 +-- .../webapp/dao/jena/OntModelSelector.java | 10 +- .../webapp/dao/jena/OntologyDaoJena.java | 34 +- .../vitro/webapp/dao/jena/PageDaoJena.java | 280 +++--- .../webapp/dao/jena/PropertyDaoJena.java | 270 +++--- .../webapp/dao/jena/PropertyGroupDaoJena.java | 54 +- .../dao/jena/PropertyInstanceDaoJena.java | 40 +- .../vitro/webapp/dao/jena/QueryUtils.java | 36 +- .../webapp/dao/jena/RDFServiceDataset.java | 12 +- .../dao/jena/RDFServiceDatasetGraph.java | 26 +- .../webapp/dao/jena/RDFServiceGraph.java | 120 +-- .../vitro/webapp/dao/jena/Regenerable.java | 2 +- .../webapp/dao/jena/RegeneratingGraph.java | 44 +- .../dao/jena/SDBGraphConnectionGenerator.java | 12 +- .../webapp/dao/jena/SDBGraphGenerator.java | 16 +- .../webapp/dao/jena/SQLGraphGenerator.java | 2 +- .../dao/jena/SimpleOntModelSelector.java | 26 +- .../jena/SingleContentOntModelSelector.java | 6 +- .../vitro/webapp/dao/jena/SparqlGraph.java | 130 +-- .../dao/jena/SparqlGraphMultilingual.java | 44 +- .../webapp/dao/jena/StaticDatasetFactory.java | 10 +- .../jena/TripleStoreUnavailableException.java | 4 +- .../webapp/dao/jena/UserAccountsDaoJena.java | 2 +- .../vitro/webapp/dao/jena/VClassDaoJena.java | 108 +-- .../vitro/webapp/dao/jena/VClassDaoSDB.java | 48 +- .../webapp/dao/jena/VClassGroupCache.java | 192 ++-- .../webapp/dao/jena/VClassGroupDaoJena.java | 38 +- .../vitro/webapp/dao/jena/VClassJena.java | 152 +-- .../webapp/dao/jena/VitroModelSource.java | 34 +- .../webapp/dao/jena/WebappDaoFactoryJena.java | 202 ++-- .../webapp/dao/jena/WebappDaoFactorySDB.java | 58 +- .../dao/jena/event/BulkUpdateEvent.java | 4 +- .../webapp/dao/jena/event/EditEvent.java | 12 +- .../jena/event/IndividualCreationEvent.java | 10 +- .../jena/event/IndividualDeletionEvent.java | 10 +- .../dao/jena/event/IndividualEditEvent.java | 10 +- .../dao/jena/event/IndividualUpdateEvent.java | 8 +- .../dao/vclassgroup/ProhibitedFromSearch.java | 44 +- .../mannlib/vitro/webapp/dwr/EntityDWR.java | 4 +- .../mannlib/vitro/webapp/dwr/PropertyDWR.java | 34 +- .../mannlib/vitro/webapp/dwr/VClassDWR.java | 16 +- ...ividualDataPropertyStatementProcessor.java | 2 +- .../VTwo/AdditionsAndRetractions.java | 28 +- .../n3editing/VTwo/BaseEditElementVTwo.java | 18 +- .../BaseEditSubmissionPreprocessorVTwo.java | 4 +- .../n3editing/VTwo/BasicValidationVTwo.java | 72 +- .../VTwo/DateTimeIntervalValidationVTwo.java | 72 +- .../VTwo/DateTimeWithPrecisionVTwo.java | 300 +++--- .../VTwo/EditConfigurationUtils.java | 116 +-- .../n3editing/VTwo/EditConfigurationVTwo.java | 494 +++++----- .../edit/n3editing/VTwo/EditElementVTwo.java | 28 +- .../n3editing/VTwo/EditN3GeneratorVTwo.java | 172 ++-- .../n3editing/VTwo/EditSubmissionUtils.java | 8 +- .../n3editing/VTwo/JspToGeneratorMapping.java | 16 +- .../VTwo/MultiValueEditSubmission.java | 138 +-- .../edit/n3editing/VTwo/N3EditUtils.java | 114 +-- .../edit/n3editing/VTwo/N3ValidatorVTwo.java | 2 +- .../edit/n3editing/VTwo/NewURIMaker.java | 12 +- .../edit/n3editing/VTwo/ProcessRdfForm.java | 316 +++--- .../edit/n3editing/VTwo/RdfLiteralHash.java | 70 +- .../n3editing/VTwo/SparqlEvaluateVTwo.java | 22 +- .../VTwo/fields/ChildVClassesOptions.java | 44 +- .../VTwo/fields/ChildVClassesWithParent.java | 32 +- .../VTwo/fields/ConstantFieldOptions.java | 42 +- .../n3editing/VTwo/fields/FieldOptions.java | 32 +- .../edit/n3editing/VTwo/fields/FieldVTwo.java | 72 +- .../IndividualsViaClassGroupOptions.java | 16 +- ...vidualsViaObjectPropertyByRankOptions.java | 22 +- .../IndividualsViaObjectPropetyOptions.java | 74 +- .../IndividualsViaSearchQueryOptions.java | 48 +- .../fields/IndividualsViaVClassOptions.java | 56 +- .../n3editing/VTwo/fields/RdfTypeOptions.java | 20 +- .../VTwo/fields/SelectListGeneratorVTwo.java | 38 +- .../EditConfigurationConstants.java | 2 +- .../configuration/ModelSelector.java | 8 +- .../configuration/StandardModelSelector.java | 4 +- ...tocompleteObjectPropertyFormGenerator.java | 6 +- .../BaseEditConfigurationGenerator.java | 78 +- .../DateTimeIntervalFormGenerator.java | 96 +- .../generators/DateTimePropertyGenerator.java | 18 +- .../DateTimeValueFormGenerator.java | 60 +- ...aultAddMissingIndividualFormGenerator.java | 176 ++-- .../DefaultDataPropertyFormGenerator.java | 112 +-- .../generators/DefaultDeleteGenerator.java | 24 +- .../DefaultObjectPropertyFormGenerator.java | 270 +++--- .../IndividualsByRankFormGenerator.java | 28 +- .../InstitutionalInternalClassForm.java | 24 +- .../ManageLabelsForIndividualGenerator.java | 156 +-- .../generators/ManageLabelsGenerator.java | 2 +- .../generators/ManagePageGenerator.java | 248 ++--- .../NewIndividualFormGenerator.java | 116 +-- .../generators/RDFSLabelGenerator.java | 134 +-- .../generators/RdfTypeGenerator.java | 28 +- ...issingIndividualFormModelPreprocessor.java | 10 +- .../DefaultDataPropEmptyField.java | 20 +- .../FoafNameToRdfsLabelPreprocessor.java | 24 +- ...ManageLabelsForIndividualPreprocessor.java | 16 +- .../preprocessors/ManagePagePreprocessor.java | 90 +- .../ModelChangePreprocessor.java | 2 +- .../utils/ProcessClassGroupDataGetterN3.java | 68 +- .../utils/ProcessDataGetterAbstract.java | 34 +- .../utils/ProcessDataGetterN3.java | 6 +- .../utils/ProcessDataGetterN3Map.java | 4 +- .../utils/ProcessDataGetterN3Utils.java | 16 +- .../utils/ProcessFixedHTMLN3.java | 58 +- ...cessIndividualsForClassesDataGetterN3.java | 74 +- .../ProcessSearchIndividualsDataGetterN3.java | 58 +- .../utils/ProcessSparqlDataGetterN3.java | 72 +- .../validators/AntiXssValidation.java | 76 +- .../DefaultDataPropertyFormValidator.java | 20 +- .../controller/EditRequestAJAXController.java | 30 +- .../EditRequestDispatchController.java | 150 +-- .../controller/PostEditCleanupController.java | 96 +- .../controller/ProcessRdfFormController.java | 132 +-- .../webapp/email/FreemarkerEmailFactory.java | 6 +- .../webapp/email/FreemarkerEmailMessage.java | 4 +- .../webapp/filestorage/FileServingHelper.java | 6 +- .../webapp/filestorage/TempFileHolder.java | 6 +- .../filestorage/UploadedFileHelper.java | 4 +- .../filestorage/impl/FileStorageHelper.java | 4 +- .../filestorage/impl/FileStorageImpl.java | 4 +- .../webapp/filestorage/impl/package-info.java | 2 +- .../webapp/filestorage/model/ImageInfo.java | 6 +- .../webapp/filters/CachingResponseFilter.java | 28 +- .../webapp/filters/CharsetEncodingFilter.java | 2 +- .../vitro/webapp/filters/ClickjackFilter.java | 2 +- .../vitro/webapp/filters/ModelSwitcher.java | 46 +- .../webapp/filters/PageRoutingFilter.java | 64 +- .../webapp/filters/RequestLoggerFilter.java | 4 +- .../webapp/filters/RequestModelsPrep.java | 2 +- .../filters/StartupStatusDisplayFilter.java | 2 +- .../webapp/filters/URLRewriterFilter.java | 4 +- .../URLRewritingHttpServletResponse.java | 50 +- .../vitro/webapp/filters/VitroURL.java | 68 +- .../config/FreemarkerConfiguration.java | 12 +- .../config/FreemarkerConfigurationImpl.java | 12 +- .../loader/FreemarkerTemplateLoader.java | 24 +- .../mannlib/vitro/webapp/i18n/I18n.java | 12 +- .../mannlib/vitro/webapp/i18n/I18nBundle.java | 2 +- .../mannlib/vitro/webapp/i18n/I18nLogger.java | 2 +- .../webapp/i18n/VitroResourceBundle.java | 18 +- .../i18n/freemarker/I18nMethodModel.java | 2 +- .../freemarker/I18nStringTemplateModel.java | 4 +- .../selection/LocaleSelectionController.java | 6 +- .../selection/LocaleSelectionDataGetter.java | 12 +- .../i18n/selection/LocaleSelectionFilter.java | 6 +- .../i18n/selection/LocaleSelectionSetup.java | 2 +- .../selection/LocaleSelectorUtilities.java | 6 +- .../webapp/i18n/selection/SelectedLocale.java | 2 +- .../imageio/IIOImageProcessor.java | 16 +- .../migration/rel17/Release17Migrator.java | 4 +- .../rel18/FauxPropertiesUpdater.java | 6 +- .../rel18/RemoveObsoleteMetadataGraphs.java | 2 +- .../modelaccess/ContextModelAccess.java | 10 +- .../vitro/webapp/modelaccess/ModelAccess.java | 16 +- .../modelaccess/RequestModelAccess.java | 4 +- .../adapters/AbstractModelMakerDecorator.java | 4 +- .../adapters/ListCachingModelMaker.java | 6 +- .../adapters/MemoryMappingModelMaker.java | 2 +- .../ModelMakerWithPersistentEmptyModels.java | 6 +- .../impl/ContextModelAccessImpl.java | 6 +- .../impl/RequestModelAccessImpl.java | 12 +- .../modelaccess/impl/keys/ModelAccessKey.java | 6 +- .../modelaccess/impl/keys/OntModelKey.java | 4 +- .../ontmodels/JoinedOntModelCache.java | 4 +- .../ontmodels/MaskingOntModelCache.java | 4 +- .../modelaccess/ontmodels/OntModelCache.java | 6 +- .../ontmodels/UnionModelsOntModelsCache.java | 6 +- .../modules/fileStorage/FileStorage.java | 10 +- .../imageProcessor/ImageProcessor.java | 6 +- .../modules/searchEngine/SearchEngine.java | 4 +- .../searchEngine/SearchEngineException.java | 4 +- .../searchEngine/SearchInputDocument.java | 10 +- .../modules/searchEngine/SearchQuery.java | 24 +- .../SearchResultDocumentList.java | 2 +- .../modules/searchIndexer/SearchIndexer.java | 48 +- .../searchIndexer/SearchIndexerStatus.java | 6 +- .../searchIndexer/SearchIndexerUtils.java | 2 +- .../tboxreasoner/TBoxReasonerStatus.java | 2 +- .../tripleSource/ContentTripleSource.java | 4 +- .../webapp/ontology/update/ABoxUpdater.java | 280 +++--- .../ontology/update/AtomicOntologyChange.java | 18 +- .../webapp/ontology/update/ChangeLogger.java | 10 +- .../webapp/ontology/update/ChangeRecord.java | 10 +- .../ontology/update/KnowledgeBaseUpdater.java | 182 ++-- .../ontology/update/OntologyChangeParser.java | 20 +- .../ontology/update/SimpleChangeLogger.java | 18 +- .../ontology/update/SimpleChangeRecord.java | 30 +- .../webapp/ontology/update/TBoxUpdater.java | 180 ++-- .../ontology/update/UpdateSettings.java | 40 +- .../webapp/rdfservice/ChangeListener.java | 16 +- .../vitro/webapp/rdfservice/ChangeSet.java | 108 +-- .../vitro/webapp/rdfservice/ModelChange.java | 18 +- .../vitro/webapp/rdfservice/RDFService.java | 124 +-- .../rdfservice/RDFServiceException.java | 6 +- .../webapp/rdfservice/RDFServiceFactory.java | 30 +- .../adapters/AbstractModelDecorator.java | 2 +- .../adapters/AbstractOntModelDecorator.java | 4 +- .../rdfservice/filter/FilteredResultSet.java | 4 +- .../filter/LanguageFilteringRDFService.java | 90 +- .../filter/LanguageFilteringUtils.java | 2 +- .../SameAsFilteringRDFServiceFactory.java | 56 +- .../webapp/rdfservice/impl/ChangeSetImpl.java | 40 +- .../rdfservice/impl/ModelChangeImpl.java | 14 +- .../impl/RDFServiceFactorySingle.java | 26 +- .../rdfservice/impl/RDFServiceImpl.java | 98 +- .../rdfservice/impl/RDFServiceUtils.java | 50 +- .../rdfservice/impl/jena/RDFServiceJena.java | 94 +- .../impl/jena/model/RDFServiceModel.java | 36 +- .../impl/jena/sdb/RDFServiceFactorySDB.java | 14 +- .../impl/jena/sdb/RDFServiceSDB.java | 36 +- .../impl/jena/tdb/RDFServiceTDB.java | 6 +- .../impl/logging/LoggingRDFService.java | 2 +- .../logging/LoggingRDFServiceFactory.java | 2 +- .../impl/logging/RDFServiceLogger.java | 10 +- .../impl/sparql/RDFServiceSparql.java | 4 +- .../impl/sparql/RDFServiceSparqlHttp.java | 62 +- .../impl/virtuoso/RDFServiceVirtuoso.java | 16 +- .../vitro/webapp/reasoner/ABoxRecomputer.java | 38 +- .../webapp/reasoner/IndividualURIQueue.java | 40 +- .../vitro/webapp/reasoner/ModelUpdate.java | 14 +- .../vitro/webapp/reasoner/ReasonerPlugin.java | 26 +- .../vitro/webapp/reasoner/SimpleReasoner.java | 526 +++++----- .../reasoner/SimpleReasonerTBoxListener.java | 38 +- .../webapp/reasoner/plugin/DisableSameAs.java | 32 +- .../reasoner/plugin/SimpleBridgingRule.java | 70 +- .../plugin/SimplePropertyAndTypeRule.java | 72 +- .../webapp/search/VitroSearchTermNames.java | 48 +- .../controller/AutocompleteController.java | 34 +- .../DataAutocompleteController.java | 40 +- .../search/controller/IndexController.java | 6 +- .../controller/PagedSearchController.java | 338 +++---- .../controller/SearchHelpController.java | 6 +- .../search/controller/UpdateUrisInIndex.java | 6 +- .../base/BaseSearchInputField.java | 4 +- .../base/BaseSearchResultDocument.java | 2 +- .../solr/SolrSearchResultDocumentList.java | 2 +- .../searchindex/IndexingChangeListener.java | 22 +- .../webapp/searchindex/SearchIndexerImpl.java | 16 +- .../searchindex/SearchIndexerSetup.java | 4 +- .../documentBuilding/DocumentModifier.java | 4 +- .../DocumentModifierList.java | 8 +- .../DocumentModifierListDeveloper.java | 2 +- .../SelectQueryDocumentModifier.java | 12 +- .../documentBuilding/ThumbnailImageURL.java | 20 +- .../ExcludeBasedOnTypeNamespace.java | 10 +- .../exclusions/SearchIndexExcluder.java | 4 +- .../exclusions/SearchIndexExcluderList.java | 12 +- .../SearchIndexExcluderListDeveloper.java | 2 +- .../exclusions/SyncingExcludeBasedOnType.java | 70 +- .../AdditionalURIsForClassGroupChanges.java | 20 +- .../AdditionalURIsForObjectProperties.java | 52 +- .../AdditionalURIsForTypeStatements.java | 6 +- .../indexing/IndexingUriFinder.java | 8 +- .../indexing/IndexingUriFinderList.java | 10 +- .../IndexingUriFinderListDeveloper.java | 2 +- .../indexing/SelectQueryUriFinder.java | 10 +- .../indexing/URIsForClassGroupChange.java | 20 +- .../searchindex/tasks/RebuildIndexTask.java | 2 +- .../tasks/UpdateStatementsTask.java | 8 +- .../searchindex/tasks/UpdateUrisTask.java | 8 +- .../FreemarkerProcessingService.java | 8 +- .../FakeApplicationOntologyService.java | 8 +- .../services/shortview/ShortViewService.java | 10 +- .../servlet/setup/ContentModelSetup.java | 46 +- .../webapp/servlet/setup/FileGraphSetup.java | 54 +- .../setup/JenaDataSourceSetupBase.java | 10 +- .../webapp/servlet/setup/JvmSmokeTests.java | 4 +- .../servlet/setup/PropertyMaskingSetup.java | 4 +- .../webapp/servlet/setup/RDFFilesLoader.java | 8 +- .../servlet/setup/RunSparqlConstructs.java | 22 +- .../servlet/setup/SimpleReasonerSetup.java | 72 +- .../webapp/servlet/setup/SolrSmokeTest.java | 4 +- .../servlet/setup/UpdateKnowledgeBase.java | 140 +-- .../vitro/webapp/sparql/GetAllClasses.java | 12 +- .../vitro/webapp/sparql/GetAllPrefix.java | 40 +- .../webapp/sparql/GetClazzAllProperties.java | 4 +- .../webapp/sparql/GetClazzDataProperties.java | 4 +- .../sparql/GetClazzObjectProperties.java | 4 +- .../vitro/webapp/sparql/GetObjectClasses.java | 12 +- .../vitro/webapp/startup/StartupManager.java | 14 +- .../vitro/webapp/startup/StartupStatus.java | 2 +- .../ConfiguredReasonerListener.java | 8 +- .../tboxreasoner/InferenceModelUpdater.java | 2 +- .../tboxreasoner/PatternListBuilder.java | 4 +- .../tboxreasoner/ReasonerConfiguration.java | 64 +- .../ReasonerStatementPattern.java | 2 +- .../webapp/tboxreasoner/TBoxReasoner.java | 8 +- .../tboxreasoner/TBoxReasonerDriver.java | 2 +- .../impl/BasicTBoxReasonerDriver.java | 18 +- .../impl/TBoxInferencesAccumulator.java | 2 +- .../impl/jfact/JFactTBoxReasoner.java | 22 +- .../impl/jfact/JFactTBoxReasonerModule.java | 2 +- .../triplesource/CombinedTripleSource.java | 4 +- .../ShortTermCombinedTripleSource.java | 4 +- .../impl/BasicCombinedTripleSource.java | 4 +- .../BasicShortTermCombinedTripleSource.java | 2 +- .../impl/sdb/ContentTripleSourceSDB.java | 6 +- .../impl/sdb/SDBConnectionSmokeTests.java | 12 +- .../triplesource/impl/sdb/SDBDataSource.java | 10 +- .../sparql/ContentTripleSourceSPARQL.java | 4 +- .../tdb/ConfigurationTripleSourceTDB.java | 6 +- .../impl/tdb/ContentTripleSourceTDB.java | 6 +- ...ApplicationConfigurationOntologyUtils.java | 38 +- .../mannlib/vitro/webapp/utils/Csv2Rdf.java | 32 +- .../webapp/utils/FrontEndEditingUtils.java | 16 +- .../mannlib/vitro/webapp/utils/Html2Text.java | 12 +- .../vitro/webapp/utils/IterableAdaptor.java | 16 +- .../vitro/webapp/utils/JsonToFmModel.java | 36 +- .../mannlib/vitro/webapp/utils/MailUtil.java | 16 +- .../vitro/webapp/utils/NamespaceMapper.java | 6 +- .../webapp/utils/NamespaceMapperFactory.java | 2 +- .../vitro/webapp/utils/SimpleStemmer.java | 8 +- .../vitro/webapp/utils/SparqlQueryRunner.java | 12 +- .../mannlib/vitro/webapp/utils/Stemmer.java | 6 +- .../ConfigurationBeanLoaderException.java | 2 +- .../utils/configuration/ConfigurationRdf.java | 2 +- .../utils/configuration/PropertyType.java | 2 +- .../utils/configuration/Validation.java | 2 +- .../utils/configuration/WrappedInstance.java | 4 +- .../utils/dataGetter/BrowseDataGetter.java | 114 +-- .../utils/dataGetter/ClassGroupPageData.java | 68 +- .../webapp/utils/dataGetter/DataGetter.java | 34 +- .../utils/dataGetter/DataGetterBase.java | 14 +- .../utils/dataGetter/DataGetterUtils.java | 184 ++-- .../dataGetter/ExecuteDataRetrieval.java | 28 +- .../utils/dataGetter/FixedHTMLDataGetter.java | 54 +- .../IndividualsForClassesDataGetter.java | 126 +-- .../SearchIndividualsDataGetter.java | 76 +- .../dataGetter/SparqlQueryDataGetter.java | 94 +- .../utils/developer/DeveloperSettings.java | 10 +- .../developer/DeveloperSettingsServlet.java | 8 +- .../vitro/webapp/utils/developer/Key.java | 8 +- .../DeveloperDisabledChangeListener.java | 4 +- .../DeveloperDisabledModelChangeListener.java | 2 +- .../developer/loggers/StackTraceUtility.java | 2 +- .../vitro/webapp/utils/fields/FieldUtils.java | 14 +- .../utils/generators/EditModeUtils.java | 16 +- .../webapp/utils/http/ContentTypeUtil.java | 26 +- .../webapp/utils/jena/DedupAndExtract.java | 18 +- .../utils/jena/ExtendedLinkedDataUtils.java | 48 +- .../webapp/utils/jena/JenaIngestUtils.java | 92 +- .../jena/JenaIngestWorkflowProcessor.java | 90 +- .../webapp/utils/jena/JenaOutputUtils.java | 18 +- .../utils/jena/NamespaceMapperJena.java | 46 +- .../webapp/utils/jena/WorkflowOntology.java | 124 +-- .../jena/criticalsection/LockableModel.java | 4 +- .../criticalsection/LockableOntModel.java | 8 +- .../LockableOntModelSelector.java | 4 +- .../jena/criticalsection/LockedModel.java | 4 +- .../vitro/webapp/utils/json/JacksonUtils.java | 4 +- .../utils/logging/ComplexStringFormatter.java | 6 +- .../utils/logging/StackTraceLayout.java | 12 +- .../vitro/webapp/utils/logging/ToString.java | 4 +- .../MenuManagementDataUtils.java | 8 +- .../menuManagement/ProcessClassGroup.java | 18 +- .../menuManagement/ProcessDataGetter.java | 4 +- .../ProcessIndividualsForClasses.java | 34 +- .../utils/searchengine/AutoCompleteWords.java | 2 +- .../webapp/utils/searchengine/FieldMap.java | 6 +- .../utils/searchengine/SearchQueryUtils.java | 78 +- .../searchengine/SearchResultsParser.java | 2 +- .../webapp/utils/sparql/SparqlQueryUtils.java | 14 +- .../sparqlrunner/ModelSelectQueryContext.java | 2 +- .../utils/sparqlrunner/QueryHolder.java | 2 +- .../RdfServiceSelectQueryContext.java | 2 +- .../utils/sparqlrunner/SparqlQueryRunner.java | 38 +- .../sparqlrunner/StringResultsMapping.java | 2 +- .../utils/threads/VitroBackgroundThread.java | 4 +- .../mannlib/vitro/webapp/web/AntiScript.java | 56 +- .../mannlib/vitro/webapp/web/ContentType.java | 76 +- .../vitro/webapp/web/MiscWebUtils.java | 34 +- .../mannlib/vitro/webapp/web/URLEncoder.java | 4 +- .../mannlib/vitro/webapp/web/ViewFinder.java | 52 +- .../beanswrappers/ReadOnlyBeansWrapper.java | 6 +- .../BaseTemplateDirectiveModel.java | 16 +- .../webapp/web/directives/EmailDirective.java | 2 +- .../IndividualShortViewDirective.java | 2 +- .../webapp/web/directives/UrlDirective.java | 30 +- .../web/directives/WidgetDirective.java | 36 +- .../webapp/web/images/PlaceholderUtil.java | 2 +- .../web/jsptags/ConfirmAuthorization.java | 4 +- .../web/jsptags/OptionsForClassTag.java | 2 +- .../web/jsptags/OptionsForPropertyTag.java | 2 +- .../web/jsptags/StringProcessorTag.java | 24 +- .../vitro/webapp/web/jsptags/Value.java | 4 +- .../web/methods/BaseTemplateMethodModel.java | 16 +- .../methods/IndividualLocalNameMethod.java | 8 +- .../IndividualPlaceholderImageUrlMethod.java | 10 +- .../methods/IndividualProfileUrlMethod.java | 6 +- .../web/templatemodels/BaseTemplateModel.java | 22 +- .../web/templatemodels/LinkTemplateModel.java | 20 +- .../vitro/webapp/web/templatemodels/Tags.java | 12 +- .../vitro/webapp/web/templatemodels/User.java | 32 +- .../VClassGroupTemplateModel.java | 24 +- .../templatemodels/VClassTemplateModel.java | 12 +- .../CustomListViewConfigFile.java | 6 +- .../DataPropertyListConfig.java | 50 +- .../customlistview/PropertyListConfig.java | 58 +- .../edit/EditConfigurationTemplateModel.java | 254 ++--- ...MultiValueEditSubmissionTemplateModel.java | 8 +- .../BaseIndividualTemplateModel.java | 104 +- .../BaseObjectPropertyDataPostProcessor.java | 22 +- .../CollatedObjectPropertyTemplateModel.java | 4 +- .../DataPropertyStatementTemplateModel.java | 42 +- .../individual/DataPropertyTemplateModel.java | 86 +- .../DefaultListViewDataPostProcessor.java | 10 +- ...efaultObjectPropertyDataPostProcessor.java | 4 +- .../individual/FauxObjectPropertyWrapper.java | 2 +- .../individual/GroupedPropertyList.java | 108 +-- .../individual/IndividualTemplateModel.java | 2 +- .../IndividualTemplateModelBuilder.java | 2 +- ...icatesObjectPropertyDataPostProcessor.java | 10 +- .../NameStatementTemplateModel.java | 30 +- .../ObjectPropertyDataPostProcessor.java | 6 +- .../ObjectPropertyStatementTemplateModel.java | 56 +- .../ObjectPropertyTemplateModel.java | 152 +-- .../PropertyGroupTemplateModel.java | 30 +- .../PropertyStatementTemplateModel.java | 12 +- .../individual/PropertyTemplateModel.java | 78 +- .../individual/SubclassTemplateModel.java | 38 +- ...UncollatedObjectPropertyTemplateModel.java | 36 +- .../individuallist/BaseListedIndividual.java | 30 +- .../individuallist/ListedIndividual.java | 2 +- .../web/templatemodels/menu/MainMenu.java | 14 +- .../web/templatemodels/menu/MainMenuItem.java | 10 +- .../webapp/web/templatemodels/menu/Menu.java | 14 +- .../web/templatemodels/menu/MenuItem.java | 18 +- .../searchresult/IndividualSearchResult.java | 2 +- .../webapp/web/widgets/BrowseWidget.java | 96 +- .../webapp/web/widgets/DateTimeWidget.java | 8 +- .../vitro/webapp/web/widgets/LoginWidget.java | 52 +- .../vitro/webapp/web/widgets/Widget.java | 68 +- .../vitro/opensocial/GadgetController.java | 30 +- .../edu/ucsf/vitro/opensocial/GadgetSpec.java | 4 +- .../vitro/opensocial/OpenSocialManager.java | 44 +- .../ext/beans/WrapperExtractor.java | 6 +- .../ext/dump/BaseDumpDirective.java | 282 +++--- .../freemarker/ext/dump/DumpAllDirective.java | 22 +- .../freemarker/ext/dump/DumpDirective.java | 28 +- .../freemarker/ext/dump/HelpDirective.java | 28 +- .../config/ConfigReader.java | 8 +- .../datasource/AbstractRequestProcessor.java | 10 +- ...ractRequestProcessorForTriplePatterns.java | 2 +- .../datasource/DataSourceBase.java | 8 +- .../datasource/DataSourceFactory.java | 6 +- .../datasource/IDataSource.java | 6 +- .../datasource/IDataSourceType.java | 8 +- .../datasource/index/IndexDataSource.java | 2 +- .../index/IndexRequestProcessorForTPFs.java | 2 +- .../datasource/tdb/JenaTDBDataSource.java | 2 +- .../DataSourceCreationException.java | 2 +- .../exceptions/DataSourceException.java | 4 +- .../DataSourceNotFoundException.java | 2 +- .../NoRegisteredMimeTypesException.java | 4 +- .../UnknownDataSourceTypeException.java | 4 +- .../fragments/FragmentRequestParserBase.java | 6 +- .../fragments/IFragmentRequestParser.java | 4 +- .../fragments/ILinkedDataFragment.java | 20 +- .../fragments/ILinkedDataFragmentRequest.java | 10 +- .../fragments/LinkedDataFragmentBase.java | 10 +- .../LinkedDataFragmentRequestBase.java | 2 +- .../fragments/tpf/ITriplePatternElement.java | 16 +- .../tpf/ITriplePatternFragmentRequest.java | 6 +- .../fragments/tpf/TPFRequestParser.java | 2 +- .../tpf/TriplePatternFragmentBase.java | 2 +- .../servlet/LinkedDataFragmentServlet.java | 12 +- .../linkeddatafragments/util/MIMEParse.java | 52 +- .../util/RDFTermParser.java | 2 +- .../util/TriplePatternElementParser.java | 2 +- .../HtmlTriplePatternFragmentWriterImpl.java | 34 +- .../views/ILinkedDataFragmentWriter.java | 12 +- .../LinkedDataFragmentWriterFactory.java | 10 +- .../views/RdfWriterImpl.java | 2 +- .../TriplePatternFragmentWriterBase.java | 6 +- .../rdfservice/RDFServiceDataSource.java | 2 +- .../VitroLinkedDataFragmentServlet.java | 12 +- .../HtmlTriplePatternFragmentWriterImpl.java | 30 +- .../LinkedDataFragmentWriterFactory.java | 8 +- .../vitro/webapp/web/antisamy-vitro-1.4.4.xml | 2 +- .../servlet/ldf-client-ui-packaged.js | 2 +- .../servlet/ldf-client-worker.js | 2 +- .../servlet/ldf-client.css | 2 +- api/src/main/resources/tpf/base.ftl.html | 2 +- api/src/main/resources/tpf/error.ftl.html | 2 +- api/src/main/resources/tpf/fragment.ftl.html | 2 +- api/src/main/resources/tpf/index.ftl.html | 2 +- api/src/main/resources/tpf/notfound.ftl.html | 2 +- .../vitro/testing/AbstractTestClass.java | 2 +- .../mannlib/vitro/testing/RecordingProxy.java | 4 +- .../factory/IsRootUserFactoryTest.java | 6 +- .../auth/policy/PolicyHelper_ModelsTest.java | 8 +- .../auth/policy/SelfEditingPolicyTest.java | 2 +- .../auth/policy/SelfEditingPolicy_2_Test.java | 2 +- .../bean/PropertyRestrictionBeanImplTest.java | 6 +- .../webapp/config/RevisionInfoSetupTest.java | 2 +- .../accounts/UserAccountsSelectorTest.java | 6 +- .../ProxyRelationshipSelectorTest.java | 6 +- .../controller/api/SparqlUpdateApiTest.java | 18 +- .../controller/edit/AuthenticateTest.java | 2 +- .../controller/edit/PrimitiveRdfEditTest.java | 26 +- .../ListClassGroupsControllerTest.java | 20 +- .../freemarker/ListControllerTestBase.java | 4 +- .../ListDatatypePropertiesControllerTest.java | 20 +- .../ListPropertyGroupsControllerTest.java | 20 +- .../ListPropertyWebappsControllerTest.java | 20 +- .../ListVClassWebappsControllerTest.java | 20 +- .../ShowClassHierarchyControllerTest.java | 18 +- ...owDataPropertyHierarchyControllerTest.java | 22 +- ...ObjectPropertyHierarchyControllerTest.java | 22 +- .../controller/freemarker/UrlBuilderTest.java | 74 +- .../grefine/JSONReconcileServletTest.java | 8 +- .../controller/json/JsonServletTest.java | 12 +- .../webapp/dao/NewURIMakerVitroTest.java | 40 +- .../IndividualFilteringByStatementTest.java | 10 +- .../filters/VitroFiltersFactoryTest.java | 88 +- .../dao/jena/DataPropertyDaoJenaTest.java | 94 +- .../jena/DependentResourceDeleteJenaTest.java | 896 +++++++++--------- .../webapp/dao/jena/JenaBaseDaoTest.java | 208 ++-- .../webapp/dao/jena/MenuDaoJenaTest.java | 42 +- .../dao/jena/ObjectPropertyDaoJenaTest.java | 124 +-- .../ObjectPropertyStatementDaoJenaTest.java | 8 +- .../dao/jena/OntModelSegementationTest.java | 114 +-- .../dao/jena/PropertyInstanceDaoJenaTest.java | 142 +-- .../dao/jena/UserAccountsDaoJenaTest.java | 2 +- .../vitro/webapp/dao/jena/VClassDaoTest.java | 120 +-- .../webapp/dao/jena/VClassGroupCacheTest.java | 28 +- .../vitro/webapp/dao/jena/VClassJenaTest.java | 198 ++-- .../vclassgroup/ProhibitedFromSearchTest.java | 72 +- .../vitro/webapp/edit/EditLiteralTest.java | 12 +- .../edit/n3editing/EditN3UtilsTest.java | 18 +- .../VTwo/BasicValidationVTwoTest.java | 16 +- .../VTwo/EditConfigurationUtilsTest.java | 14 +- .../VTwo/EditN3GeneratorVTwoTest.java | 188 ++-- .../n3editing/VTwo/ProcessRdfFormTest.java | 244 ++--- .../validators/AntiXssValidationTest.java | 110 +-- .../processEdit/RdfLiteralHashTest.java | 10 +- .../filestorage/FileServingHelperTest.java | 2 +- .../impl/FileStorageHelperTest.java | 2 +- .../URLRewritingHttpServletResponseTest.java | 92 +- .../vitro/webapp/filters/VitroURLTest.java | 50 +- .../mannlib/vitro/webapp/i18n/I18nTest.java | 2 +- .../selection/LocaleSelectionSetupTest.java | 4 +- .../adapters/VitroModelFactoryTest.java | 26 +- .../LanguageFilteringRDFServiceTest.java | 2 +- .../SimpleReasonerInversePropertyTest.java | 254 ++--- .../reasoner/SimpleReasonerPluginTest.java | 76 +- .../reasoner/SimpleReasonerSameAsTest.java | 282 +++--- .../reasoner/SimpleReasonerTBoxHelper.java | 20 +- .../webapp/reasoner/SimpleReasonerTest.java | 522 +++++----- .../webapp/reasoner/plugin/SamplePlugin.java | 6 +- .../controller/PagedSearchControllerTest.java | 18 +- .../base/BaseSearchInputDocumentTest.java | 2 +- .../ThumbnailImageURLTest.java | 12 +- .../exclusions/ExcludeBasedOnTypeTest.java | 46 +- ...dditionalURIsForClassGroupChangesTest.java | 36 +- ...AdditionalURIsForObjectPropertiesTest.java | 64 +- .../AdditionalURIsForTypeStatementsTest.java | 8 +- .../indexing/SelectQueryUriFinderTest.java | 10 +- .../setup/UpdateKnowledgeBaseTest.java | 4 +- .../vitro/webapp/test/JenaOntologyLoader.java | 38 +- .../ConfigurationBeanLoaderTest.java | 10 +- .../ConfigurationBeanLoader_PropertyTest.java | 2 +- .../utils/dataGetter/DataGetterUtilsTest.java | 20 +- .../dataGetter/SparqlQueryDataGetterTest.java | 38 +- .../utils/ingest/JenaIngestUtilsTest.java | 26 +- .../utils/jena/JenaIngestUtilsTest.java | 12 +- .../webapp/utils/json/JacksonUtilsTest.java | 4 +- .../vitro/webapp/web/ContentTypeTest.java | 22 +- .../templatemodels/BaseTemplateModelTest.java | 10 +- .../webapp/web/templatemodels/TagsTest.java | 2 +- .../CustomListViewConfigFileTest.java | 6 +- ...yTemplateModel_PropertyListConfigTest.java | 8 +- .../ext/dump/DumpAllDirectiveTest.java | 44 +- .../ext/dump/DumpDirectiveTest.java | 602 ++++++------ .../bean/PropertyRestrictionBeanStub.java | 2 +- .../vitro/webapp/beans/IndividualStub.java | 2 +- .../config/ConfigurationPropertiesStub.java | 2 +- .../vitro/webapp/dao/ApplicationDaoStub.java | 2 +- .../vitro/webapp/dao/DataPropertyDaoStub.java | 2 +- .../vitro/webapp/dao/IndividualDaoStub.java | 10 +- .../mannlib/vitro/webapp/dao/MenuDaoStub.java | 2 +- .../webapp/dao/ObjectPropertyDaoStub.java | 2 +- .../dao/ObjectPropertyStatementDaoStub.java | 2 +- .../vitro/webapp/dao/OntologyDaoStub.java | 4 +- .../webapp/dao/PropertyGroupDaoStub.java | 16 +- .../vitro/webapp/dao/UserAccountsDaoStub.java | 2 +- .../vitro/webapp/dao/VClassGroupDaoStub.java | 6 +- .../webapp/dao/WebappDaoFactoryStub.java | 2 +- .../mannlib/vitro/webapp/i18n/I18nStub.java | 6 +- .../modelaccess/ContextModelAccessStub.java | 10 +- .../modelaccess/ModelAccessFactoryStub.java | 4 +- .../modelaccess/RequestModelAccessStub.java | 2 +- .../vitro/webapp/modules/ApplicationStub.java | 2 +- .../searchEngine/SearchResponseStub.java | 2 +- .../searchIndexer/SearchIndexerStub.java | 2 +- .../java/stubs/javax/naming/ContextStub.java | 2 +- .../javax/naming/InitialContextStub.java | 4 +- .../naming/spi/InitialContextFactoryStub.java | 2 +- .../servlet/http/HttpServletResponseStub.java | 2 +- .../rdf/model/ModelMaker/ModelMakerStub.java | 6 +- .../test/resources/commons-logging.properties | 2 +- .../accounts/UserAccountsSelectorTest.n3 | 32 +- ...roxyRelationshipSelectorTest_UnionModel.n3 | 32 +- ...ationshipSelectorTest_UserAccountsModel.n3 | 4 +- .../IndividualRdfAssemblerTest.filteredRdf.n3 | 106 +-- .../IndividualRdfAssemblerTest.rawRdf.n3 | 114 +-- ...ndividualRdfAssemblerTest.unfilteredRdf.n3 | 114 +-- .../jena/resources/UserAccountsDaoJenaTest.n3 | 12 +- .../webapp/dao/jena/resources/menuForTest.n3 | 26 +- .../webapp/edit/n3editing/testEditConfig.json | 2 +- .../dataGetter/resources/dataGetterTest.n3 | 16 +- .../vitro/webapp/utils/ingest/renameBlank.n3 | 2 +- .../testConfig-constructQueryMissing.xml | 4 +- .../testConfig-constructQueryMultiple.xml | 6 +- .../individual/testConfig-default.xml | 8 +- .../testConfig-postProcessorClassNotFound.xml | 10 +- ...stConfig-postProcessorClassNotSuitable.xml | 10 +- ...ostProcessorConstructorThrowsException.xml | 10 +- .../testConfig-postProcessorNameEmpty.xml | 10 +- .../individual/testConfig-postProcessorOK.xml | 10 +- ...stConfig-postProcessorWrongConstructor.xml | 8 +- .../testConfig-templateDoesNotExist.xml | 8 +- api/src/test/resources/log4j.properties | 4 +- .../testontologies/SolrQueryTestRDF/jcr.rdf | 2 +- .../SolrQueryTestRDF/vivo15.2.n3 | 2 +- .../testontologies/SolrQueryTestRDF/vivo15.n3 | 2 +- .../testontologies/smallVivo-20070809.owl | 8 +- .../test/resources/testontologies/vitro1.owl | 4 +- .../resources/testontologies/vivo-users.owl | 4 +- home/src/main/assembly/home.xml | 2 +- .../config/example.applicationSetup.n3 | 40 +- .../config/example.developer.properties | 16 +- .../config/example.runtime.properties | 56 +- .../rdf/auth/everytime/permission_config.n3 | 56 +- .../rdf/display/everytime/dataGetterLabels.n3 | 10 +- .../everytime/displayModelListViews.rdf | 6 +- .../rdf/display/everytime/pageList.n3 | 4 +- .../rdf/display/everytime/permissions.n3 | 12 +- .../searchIndexerConfigurationVitro.n3 | 6 +- .../everytime/vitroSearchProhibited.n3 | 26 +- .../rdf/display/firsttime/application.owl | 10 +- .../resources/rdf/display/firsttime/menu.n3 | 8 +- .../firsttime/pageList_editableStatements.n3 | 20 +- .../rdf/display/firsttime/profilePageType.n3 | 10 +- .../everytime/displayDisplay.n3 | 14 +- .../rdf/displayTbox/everytime/displayTBOX.n3 | 114 +-- .../rdf/tbox/filegraph/vitro-0.7.owl | 6 +- .../rdf/tbox/filegraph/vitroPublic.owl | 6 +- home/src/main/resources/solr/README.txt | 2 +- .../main/resources/solr/conf/admin-extra.html | 2 +- .../clustering/carrot2/kmeans-attributes.xml | 4 +- .../clustering/carrot2/lingo-attributes.xml | 6 +- .../clustering/carrot2/stc-attributes.xml | 2 +- .../src/main/resources/solr/conf/currency.xml | 8 +- home/src/main/resources/solr/conf/elevate.xml | 4 +- .../solr/conf/lang/contractions_it.txt | 38 +- .../resources/solr/conf/lang/stoptags_ja.txt | 110 +-- .../resources/solr/conf/lang/stopwords_ar.txt | 2 +- .../resources/solr/conf/lang/stopwords_ca.txt | 12 +- .../resources/solr/conf/lang/stopwords_el.txt | 4 +- .../resources/solr/conf/lang/stopwords_fi.txt | 2 +- .../resources/solr/conf/lang/stopwords_hi.txt | 16 +- .../resources/solr/conf/lang/stopwords_hu.txt | 2 +- .../resources/solr/conf/lang/stopwords_lv.txt | 12 +- .../resources/solr/conf/lang/stopwords_ro.txt | 2 +- .../solr/conf/mapping-FoldToASCII.txt | 6 +- .../main/resources/solr/conf/schema-old.xml | 168 ++-- home/src/main/resources/solr/conf/schema.xml | 372 ++++---- .../resources/solr/conf/solrconfig-old.xml | 272 +++--- .../main/resources/solr/conf/solrconfig.xml | 418 ++++---- .../resources/solr/conf/stopwords-name.txt | 2 +- .../solr/conf/velocity/VM_global_library.vm | 8 +- .../conf/velocity/jquery.autocomplete.css | 8 +- .../solr/conf/velocity/jquery.autocomplete.js | 124 +-- .../resources/solr/conf/velocity/main.css | 14 +- .../solr/conf/velocity/query_group.vm | 2 +- .../solr/conf/velocity/query_spatial.vm | 2 +- .../solr/conf/velocity/richtext_doc.vm | 2 +- .../main/resources/solr/conf/xslt/example.xsl | 14 +- .../resources/solr/conf/xslt/example_atom.xsl | 8 +- .../resources/solr/conf/xslt/example_rss.xsl | 6 +- .../main/resources/solr/conf/xslt/luke.xsl | 8 +- .../resources/solr/conf/xslt/updateXml.xsl | 6 +- home/src/main/resources/solr/solr.xml | 4 +- .../main/resources/solr/solr_newversion.xml | 6 +- installer/example-settings.xml | 2 +- installer/home/src/main/assembly/home.xml | 2 +- .../main/webResources/META-INF/context.xml | 4 +- .../main/webResources/META-INF/context.xml | 2 +- .../src/main/webapp/local/css/local.css | 2 +- legacy/doc/css/doc.css | 22 +- legacy/doc/install.html | 606 ++++++------ legacy/doc/license.txt | 22 +- legacy/opensocial/build_orng.xml | 46 +- legacy/opensocial/sample-gadgets/Links.xml | 144 +-- legacy/opensocial/sample-gadgets/Mentor.xml | 220 ++--- .../sample-gadgets/ProfileListTool.xml | 256 ++--- legacy/opensocial/sample-gadgets/RDFTest.xml | 12 +- .../sample-gadgets/SearchExample.xml | 26 +- .../opensocial/sample-gadgets/SlideShare.xml | 78 +- legacy/opensocial/sample-gadgets/Twitter.xml | 64 +- .../opensocial/sample-gadgets/WEB-INF/web.xml | 6 +- legacy/opensocial/shindig_orng_tables.sql | 26 +- legacy/solr/README.txt | 16 +- .../utilities/buildutils/jarUsageScanner.rb | 28 +- .../tonicsystems/jarjar/KlugedDepFind.java | 2 +- .../CheckContainerNeutrality.java | 54 +- .../vitro/utilities/jarlist/JarLister.java | 18 +- .../utilities/revisioninfo/ProcessRunner.java | 6 +- .../revisioninfo/RevisionInfoBuilder.java | 8 +- .../testing/VitroTestRunListener.java | 8 +- .../utilities/testing/VitroTestRunner.java | 2 +- .../utilities/rdbmigration/RdbMigrator.java | 2 +- legacy/utilities/sdb_to_tdb/README.txt | 12 +- .../vitro/utilities/sdb2tdb/Sdb2Tdb.java | 14 +- .../utilities/solrtest/SolrConfigTester.java | 10 +- .../utilities/testrunner/test-user-model.owl | 18 +- legacy/webapp/config/example.build.properties | 8 +- .../webapp/config/example.runtime.properties | 56 +- .../config/jarlist/known_dependencies.txt | 4 +- .../config/licenser/known_exceptions.txt | 6 +- .../config/licenser/licenser.properties | 10 +- legacy/webapp/config/log4j.properties | 4 +- legacy/webapp/context.xml | 2 +- .../languages/es_GO/i18n/all_es_GO.properties | 2 +- .../freemarker/search-help_es_GO.ftl | 16 +- .../templates/freemarker/termsOfUse_es_GO.ftl | 22 +- .../userAccounts-acctCreatedEmail_es_GO.ftl | 6 +- ...serAccounts-passwordCreatedEmail_es_GO.ftl | 2 +- ...ounts-passwordResetCompleteEmail_es_GO.ftl | 2 +- ...counts-passwordResetPendingEmail_es_GO.ftl | 22 +- .../WEB-INF/resources/revisionInfo.txt | 2 +- webapp/src/main/webapp/WEB-INF/dwr.xml | 16 +- .../WEB-INF/resources/shortview_config.n3 | 4 +- .../WEB-INF/resources/startup_listeners.txt | 8 +- .../WEB-INF/tlds/StringProcessorTag.tld | 20 +- .../main/webapp/WEB-INF/tlds/VitroUtils.tld | 22 +- webapp/src/main/webapp/WEB-INF/tlds/c.tld | 6 +- .../src/main/webapp/WEB-INF/tlds/database.tld | 2 +- webapp/src/main/webapp/WEB-INF/tlds/fn.tld | 4 +- webapp/src/main/webapp/WEB-INF/tlds/form.tld | 16 +- .../webapp/WEB-INF/tlds/taglibs-mailer.tld | 26 +- .../webapp/WEB-INF/tlds/taglibs-random.tld | 10 +- .../webapp/WEB-INF/tlds/taglibs-string.tld | 6 +- .../main/webapp/WEB-INF/tlds/vitroForm.tld | 8 +- webapp/src/main/webapp/WEB-INF/web.xml | 10 +- .../src/main/webapp/admin/conceptRepair.jsp | 22 +- .../src/main/webapp/admin/gotoIndividual.jsp | 10 +- webapp/src/main/webapp/admin/log4j.jsp | 4 +- .../webapp/admin/removeBadRestrictions.jsp | 12 +- .../admin/removeResourceDescription.jsp | 24 +- webapp/src/main/webapp/admin/sparql.jsp | 2 +- .../config/listViewConfig-dataDefault.xml | 10 +- .../webapp/config/listViewConfig-default.xml | 32 +- .../config/listViewConfig-hasElement.xml | 4 +- .../src/main/webapp/css/account/account.css | 36 +- webapp/src/main/webapp/css/admin.css | 4 +- .../src/main/webapp/css/browseClassGroups.css | 6 +- webapp/src/main/webapp/css/browseIndex.css | 8 +- webapp/src/main/webapp/css/classHierarchy.css | 2 +- .../webapp/css/developer/developerPanel.css | 10 +- webapp/src/main/webapp/css/dump.css | 10 +- webapp/src/main/webapp/css/edit.css | 24 +- .../individual/individual-property-groups.css | 18 +- .../main/webapp/css/individual/individual.css | 10 +- .../individual/menuManagement-menuItems.css | 2 +- .../css/jquery_plugins/jquery.realperson.css | 10 +- .../jquery_plugins/qtip/jquery.qtip.min.css | 2 +- webapp/src/main/webapp/css/login.css | 10 +- .../webapp/css/menupage/menuManagement.css | 2 +- .../src/main/webapp/css/menupage/menupage.css | 2 +- .../src/main/webapp/css/menupage/pageList.css | 4 +- .../webapp/css/menupage/pageManagement.css | 10 +- .../webapp/css/menupage/sparqlresults.css | 2 +- webapp/src/main/webapp/css/revision.css | 2 +- webapp/src/main/webapp/css/search.css | 22 +- webapp/src/main/webapp/css/startupStatus.css | 2 +- webapp/src/main/webapp/css/uploadImages.css | 6 +- webapp/src/main/webapp/css/vitro.css | 132 +-- webapp/src/main/webapp/error.jsp | 14 +- webapp/src/main/webapp/i18n/all.properties | 2 +- .../placeholders/placeholders.properties | 2 +- webapp/src/main/webapp/jenaIngest/csv2rdf.jsp | 22 +- .../webapp/jenaIngest/csv2rdfSelectUri.jsp | 34 +- .../webapp/jenaIngest/executeWorkflow.jsp | 6 +- .../webapp/jenaIngest/exportSelection.jsp | 4 +- .../main/webapp/jenaIngest/generateTBox.jsp | 4 +- .../src/main/webapp/jenaIngest/ingestMenu.jsp | 2 +- .../src/main/webapp/jenaIngest/listModels.jsp | 4 +- .../main/webapp/jenaIngest/loadRDFData.jsp | 2 +- .../main/webapp/jenaIngest/mergeResources.jsp | 10 +- .../main/webapp/jenaIngest/merge_result.jsp | 8 +- .../src/main/webapp/jenaIngest/notfound.jsp | 2 +- .../main/webapp/jenaIngest/permanentURI.jsp | 12 +- .../main/webapp/jenaIngest/processStrings.jsp | 4 +- .../jenaIngest/renameBNodesURISelect.jsp | 36 +- .../main/webapp/jenaIngest/renameResource.jsp | 8 +- .../main/webapp/jenaIngest/renameResult.jsp | 2 +- .../webapp/jenaIngest/smushSingleModel.jsp | 4 +- .../webapp/jenaIngest/sparqlConstruct.jsp | 10 +- .../webapp/jenaIngest/splitPropertyValues.jsp | 12 +- .../main/webapp/jenaIngest/workflowStep.jsp | 6 +- .../main/webapp/jenaIngest/xmlFileUpload.jsp | 6 +- .../js/account/accountAssociateProfile.js | 88 +- .../js/account/accountExternalAuthFlag.js | 8 +- .../webapp/js/account/accountListenerSetup.js | 8 +- .../webapp/js/account/accountProxyCommon.js | 46 +- .../js/account/accountProxyItemsPanel.js | 40 +- .../main/webapp/js/account/accountUtils.js | 24 +- .../src/main/webapp/js/account/proxyUtils.js | 10 +- .../webapp/js/amplify/amplify.store.min.js | 6 +- webapp/src/main/webapp/js/betterDateInput.js | 24 +- .../src/main/webapp/js/browseClassGroups.js | 66 +- webapp/src/main/webapp/js/browserUtils.js | 6 +- webapp/src/main/webapp/js/commentForm.js | 4 +- webapp/src/main/webapp/js/commentsForm.jsp | 2 +- webapp/src/main/webapp/js/customFormUtils.js | 26 +- webapp/src/main/webapp/js/detect.js | 62 +- .../webapp/js/developer/developerPanel.js | 34 +- webapp/src/main/webapp/js/edit/entityRetry.js | 62 +- webapp/src/main/webapp/js/edit/initTinyMce.js | 6 +- webapp/src/main/webapp/js/ents_edit.js | 118 +-- webapp/src/main/webapp/js/ents_retry.js | 14 +- .../src/main/webapp/js/extensions/String.js | 8 +- webapp/src/main/webapp/js/html5.js | 2 +- .../main/webapp/js/imageUpload/cropImage.js | 12 +- .../webapp/js/imageUpload/imageUploadUtils.js | 2 +- .../webapp/js/individual/individualUriRdf.js | 4 +- .../individual/manageLabelsForIndividual.js | 96 +- .../webapp/js/individual/menuManagement.js | 68 +- .../js/individual/moreLessController.js | 44 +- .../js/individual/propertyGroupControls.js | 50 +- .../js/jquery-ui/js/jquery-ui-1.12.1.min.js | 2 +- webapp/src/main/webapp/js/jquery.fix.clone.js | 2 +- .../js/jquery_plugins/jcrop/jquery.Jcrop.css | 2 +- .../js/jquery_plugins/jcrop/jquery.Jcrop.js | 2 +- .../jquery.autocomplete.css | 8 +- .../jquery.autocomplete.pack.js | 2 +- .../js/jquery_plugins/jquery.MultiFile.js | 186 ++-- .../jquery_plugins/jquery.MultiFile.pack.js | 4 +- .../js/jquery_plugins/jquery.bgiframe.pack.js | 4 +- .../js/jquery_plugins/jquery.realperson.js | 4 +- .../js/jquery_plugins/jquery.scrollTo-min.js | 2 +- .../js/jquery_plugins/qtip/jquery.qtip.min.js | 2 +- .../webapp/js/jquery_plugins/supersleight.js | 2 +- .../js/jquery_plugins/ui.datepicker.css | 2 +- .../webapp/js/jquery_plugins/ui.datepicker.js | 80 +- .../src/main/webapp/js/languageMenuUtils.js | 14 +- webapp/src/main/webapp/js/login/loginUtils.js | 12 +- .../main/webapp/js/menupage/browseByVClass.js | 68 +- .../webapp/js/menupage/menumanagement_edit.js | 56 +- .../webapp/js/menupage/pageManagementUtils.js | 202 ++-- .../processClassGroupDataGetterContent.js | 40 +- .../js/menupage/processDataGetterUtils.js | 12 +- .../processFixedHTMLDataGetterContent.js | 12 +- ...sIndividualsForClassesDataGetterContent.js | 12 +- .../processSearchDataGetterContent.js | 28 +- .../processSparqlDataGetterContent.js | 20 +- webapp/src/main/webapp/js/openSocial/orng.js | 78 +- webapp/src/main/webapp/js/pageDeletion.js | 16 +- webapp/src/main/webapp/js/raphael/g.bar.js | 6 +- .../src/main/webapp/js/raphael/g.raphael.js | 2 +- webapp/src/main/webapp/js/raphael/raphael.js | 2 +- webapp/src/main/webapp/js/searchDownload.js | 6 +- webapp/src/main/webapp/js/selectivizr.js | 2 +- .../js/siteAdmin/classHierarchyUtils.js | 64 +- .../siteAdmin/fauxPropertiesListingUtils.js | 4 +- .../siteAdmin/objectPropertyHierarchyUtils.js | 82 +- .../webapp/js/siteAdmin/siteAdminUtils.js | 24 +- webapp/src/main/webapp/js/sparql/prototype.js | 2 +- webapp/src/main/webapp/js/sparql/sparql.js | 114 +-- .../main/webapp/js/tiny_mce/jquery.tinymce.js | 2 +- .../src/main/webapp/js/tiny_mce/langs/en.js | 2 +- .../src/main/webapp/js/tiny_mce/license.txt | 2 +- .../tiny_mce/plugins/advhr/editor_plugin.js | 2 +- .../plugins/advhr/editor_plugin_src.js | 2 +- .../js/tiny_mce/plugins/advhr/langs/en_dlg.js | 2 +- .../plugins/advimage/editor_plugin.js | 2 +- .../plugins/advimage/editor_plugin_src.js | 2 +- .../js/tiny_mce/plugins/advimage/image.htm | 104 +- .../tiny_mce/plugins/advimage/langs/en_dlg.js | 2 +- .../tiny_mce/plugins/advlink/editor_plugin.js | 2 +- .../plugins/advlink/editor_plugin_src.js | 2 +- .../tiny_mce/plugins/advlink/langs/en_dlg.js | 2 +- .../js/tiny_mce/plugins/advlink/link.htm | 142 +-- .../tiny_mce/plugins/advlist/editor_plugin.js | 2 +- .../plugins/advlist/editor_plugin_src.js | 4 +- .../plugins/autolink/editor_plugin.js | 2 +- .../plugins/autolink/editor_plugin_src.js | 2 +- .../plugins/autoresize/editor_plugin.js | 2 +- .../plugins/autosave/editor_plugin.js | 2 +- .../plugins/autosave/editor_plugin_src.js | 8 +- .../tiny_mce/plugins/bbcode/editor_plugin.js | 2 +- .../plugins/bbcode/editor_plugin_src.js | 6 +- .../plugins/contextmenu/editor_plugin.js | 2 +- .../plugins/contextmenu/editor_plugin_src.js | 2 +- .../plugins/directionality/editor_plugin.js | 2 +- .../directionality/editor_plugin_src.js | 2 +- .../plugins/emotions/editor_plugin.js | 2 +- .../plugins/emotions/editor_plugin_src.js | 2 +- .../tiny_mce/plugins/emotions/js/emotions.js | 8 +- .../tiny_mce/plugins/example/editor_plugin.js | 2 +- .../plugins/example/editor_plugin_src.js | 2 +- .../example_dependency/editor_plugin.js | 2 +- .../plugins/fullpage/css/fullpage.css | 4 +- .../plugins/fullpage/editor_plugin.js | 2 +- .../plugins/fullpage/editor_plugin_src.js | 4 +- .../js/tiny_mce/plugins/fullpage/fullpage.htm | 52 +- .../tiny_mce/plugins/fullpage/js/fullpage.js | 10 +- .../tiny_mce/plugins/fullpage/langs/en_dlg.js | 2 +- .../plugins/fullscreen/editor_plugin.js | 2 +- .../tiny_mce/plugins/iespell/editor_plugin.js | 2 +- .../plugins/iespell/editor_plugin_src.js | 2 +- .../plugins/inlinepopups/editor_plugin.js | 2 +- .../plugins/insertdatetime/editor_plugin.js | 2 +- .../insertdatetime/editor_plugin_src.js | 2 +- .../tiny_mce/plugins/layer/editor_plugin.js | 2 +- .../plugins/layer/editor_plugin_src.js | 6 +- .../plugins/legacyoutput/editor_plugin.js | 2 +- .../tiny_mce/plugins/lists/editor_plugin.js | 2 +- .../tiny_mce/plugins/media/editor_plugin.js | 2 +- .../js/tiny_mce/plugins/media/js/media.js | 16 +- .../js/tiny_mce/plugins/media/langs/en_dlg.js | 2 +- .../js/tiny_mce/plugins/media/media.htm | 14 +- .../plugins/nonbreaking/editor_plugin.js | 2 +- .../plugins/nonbreaking/editor_plugin_src.js | 4 +- .../plugins/noneditable/editor_plugin.js | 2 +- .../plugins/noneditable/editor_plugin_src.js | 4 +- .../plugins/pagebreak/editor_plugin.js | 2 +- .../plugins/pagebreak/editor_plugin_src.js | 2 +- .../tiny_mce/plugins/paste/editor_plugin.js | 2 +- .../js/tiny_mce/plugins/paste/langs/en_dlg.js | 2 +- .../js/tiny_mce/plugins/paste/pastetext.htm | 4 +- .../tiny_mce/plugins/preview/editor_plugin.js | 2 +- .../plugins/preview/editor_plugin_src.js | 4 +- .../tiny_mce/plugins/print/editor_plugin.js | 2 +- .../js/tiny_mce/plugins/save/editor_plugin.js | 2 +- .../plugins/save/editor_plugin_src.js | 2 +- .../plugins/searchreplace/editor_plugin.js | 2 +- .../searchreplace/editor_plugin_src.js | 2 +- .../plugins/searchreplace/js/searchreplace.js | 4 +- .../plugins/searchreplace/langs/en_dlg.js | 2 +- .../plugins/spellchecker/editor_plugin.js | 2 +- .../tiny_mce/plugins/style/editor_plugin.js | 2 +- .../js/tiny_mce/plugins/style/js/props.js | 18 +- .../js/tiny_mce/plugins/style/props.htm | 6 +- .../plugins/tabfocus/editor_plugin.js | 2 +- .../webapp/js/tiny_mce/plugins/table/cell.htm | 34 +- .../js/tiny_mce/plugins/table/css/cell.css | 2 +- .../js/tiny_mce/plugins/table/css/row.css | 2 +- .../tiny_mce/plugins/table/editor_plugin.js | 2 +- .../plugins/table/editor_plugin_src.js | 26 +- .../js/tiny_mce/plugins/table/js/table.js | 2 +- .../js/tiny_mce/plugins/table/langs/en_dlg.js | 2 +- .../js/tiny_mce/plugins/table/table.htm | 70 +- .../plugins/template/editor_plugin.js | 2 +- .../plugins/template/editor_plugin_src.js | 2 +- .../tiny_mce/plugins/template/langs/en_dlg.js | 2 +- .../js/tiny_mce/plugins/template/template.htm | 8 +- .../plugins/visualblocks/editor_plugin.js | 2 +- .../plugins/visualblocks/editor_plugin_src.js | 2 +- .../plugins/visualchars/editor_plugin.js | 2 +- .../plugins/visualchars/editor_plugin_src.js | 2 +- .../plugins/wordcount/editor_plugin.js | 2 +- .../js/tiny_mce/plugins/xhtmlxtras/abbr.htm | 80 +- .../tiny_mce/plugins/xhtmlxtras/acronym.htm | 80 +- .../plugins/xhtmlxtras/attributes.htm | 76 +- .../js/tiny_mce/plugins/xhtmlxtras/cite.htm | 80 +- .../js/tiny_mce/plugins/xhtmlxtras/del.htm | 86 +- .../plugins/xhtmlxtras/editor_plugin.js | 2 +- .../plugins/xhtmlxtras/editor_plugin_src.js | 2 +- .../js/tiny_mce/plugins/xhtmlxtras/ins.htm | 90 +- .../plugins/xhtmlxtras/js/element_common.js | 2 +- .../plugins/xhtmlxtras/langs/en_dlg.js | 2 +- .../js/tiny_mce/themes/advanced/about.htm | 2 +- .../js/tiny_mce/themes/advanced/charmap.htm | 2 +- .../themes/advanced/editor_template.js | 2 +- .../js/tiny_mce/themes/advanced/image.htm | 2 +- .../js/tiny_mce/themes/advanced/js/charmap.js | 4 +- .../js/tiny_mce/themes/advanced/js/image.js | 2 +- .../js/tiny_mce/themes/advanced/js/link.js | 2 +- .../js/tiny_mce/themes/advanced/langs/en.js | 2 +- .../js/tiny_mce/themes/advanced/link.htm | 8 +- .../js/tiny_mce/themes/advanced/shortcuts.htm | 6 +- .../themes/advanced/skins/highcontrast/ui.css | 2 +- .../themes/advanced/skins/o2k7/ui_black.css | 2 +- .../tiny_mce/themes/simple/editor_template.js | 2 +- .../themes/simple/editor_template_src.js | 2 +- .../js/tiny_mce/themes/simple/langs/en.js | 2 +- .../themes/simple/skins/default/content.css | 2 +- .../themes/simple/skins/o2k7/content.css | 2 +- .../src/main/webapp/js/tiny_mce/tiny_mce.js | 2 +- .../main/webapp/js/tiny_mce/tiny_mce_popup.js | 2 +- .../main/webapp/js/tiny_mce/tiny_mce_src.js | 348 +++---- .../main/webapp/js/tiny_mce/utils/mctabs.js | 10 +- .../main/webapp/js/tiny_mce/utils/validate.js | 4 +- .../main/webapp/js/userMenu/userMenuUtils.js | 12 +- webapp/src/main/webapp/js/utils.js | 4 +- webapp/src/main/webapp/js/vitro.js | 54 +- webapp/src/main/webapp/js/vitroUtils.js | 8 +- .../webapp/jsp/checkDatatypeProperties.jsp | 4 +- webapp/src/main/webapp/local/css/local.css | 2 +- webapp/src/main/webapp/src/AdapterRegistry.js | 2 +- webapp/src/main/webapp/src/Deferred.js | 8 +- .../main/webapp/src/animation/Animation.js | 2 +- webapp/src/main/webapp/src/behavior.js | 8 +- webapp/src/main/webapp/src/bootstrap1.js | 52 +- webapp/src/main/webapp/src/bootstrap2.js | 2 +- webapp/src/main/webapp/src/browser_debug.js | 4 +- .../main/webapp/src/collections/BinaryTree.js | 2 +- .../webapp/src/collections/Collections.js | 10 +- .../main/webapp/src/collections/Dictionary.js | 8 +- .../src/main/webapp/src/collections/Graph.js | 2 +- .../main/webapp/src/collections/SkipList.js | 8 +- .../main/webapp/src/collections/SortedList.js | 2 +- .../webapp/src/collections/__package__.js | 8 +- webapp/src/main/webapp/src/data/Attribute.js | 12 +- webapp/src/main/webapp/src/data/Item.js | 40 +- webapp/src/main/webapp/src/data/Kind.js | 2 +- webapp/src/main/webapp/src/data/Observable.js | 6 +- webapp/src/main/webapp/src/data/ResultSet.js | 2 +- webapp/src/main/webapp/src/data/Value.js | 4 +- webapp/src/main/webapp/src/data/format/Csv.js | 22 +- .../src/main/webapp/src/data/format/Json.js | 14 +- .../src/main/webapp/src/data/provider/Base.js | 4 +- .../webapp/src/data/provider/Delicious.js | 22 +- .../main/webapp/src/data/provider/FlatFile.js | 4 +- .../main/webapp/src/data/provider/JotSpot.js | 2 +- .../main/webapp/src/data/provider/MySql.js | 2 +- webapp/src/main/webapp/src/data/to_do.txt | 8 +- webapp/src/main/webapp/src/date.js | 120 +-- webapp/src/main/webapp/src/debug.js | 4 +- webapp/src/main/webapp/src/debug/deep.html | 8 +- webapp/src/main/webapp/src/dnd/DragAndDrop.js | 2 +- .../main/webapp/src/dnd/HtmlDragAndDrop.js | 4 +- .../main/webapp/src/dnd/HtmlDragManager.js | 10 +- .../src/main/webapp/src/dnd/HtmlDragMove.js | 4 +- webapp/src/main/webapp/src/doc.js | 26 +- webapp/src/main/webapp/src/dom.js | 14 +- webapp/src/main/webapp/src/event.js | 40 +- webapp/src/main/webapp/src/event/browser.js | 10 +- webapp/src/main/webapp/src/event/topic.js | 8 +- webapp/src/main/webapp/src/flash.js | 520 +++++----- webapp/src/main/webapp/src/fx/html.js | 2 +- webapp/src/main/webapp/src/fx/svg.js | 2 +- .../main/webapp/src/graphics/Colorspace.js | 6 +- .../src/main/webapp/src/graphics/color/hsl.js | 2 +- .../src/main/webapp/src/graphics/color/hsv.js | 6 +- .../src/main/webapp/src/hostenv_adobesvg.js | 50 +- .../src/main/webapp/src/hostenv_dashboard.js | 2 +- webapp/src/main/webapp/src/hostenv_jsc.js | 2 +- webapp/src/main/webapp/src/hostenv_rhino.js | 14 +- .../main/webapp/src/hostenv_spidermonkey.js | 16 +- webapp/src/main/webapp/src/hostenv_svg.js | 16 +- webapp/src/main/webapp/src/html.js | 40 +- webapp/src/main/webapp/src/html/extras.js | 10 +- webapp/src/main/webapp/src/html/layout.js | 2 +- webapp/src/main/webapp/src/iCalendar.js | 76 +- webapp/src/main/webapp/src/io.js | 38 +- webapp/src/main/webapp/src/io/BrowserIO.js | 14 +- webapp/src/main/webapp/src/io/IframeIO.js | 12 +- webapp/src/main/webapp/src/io/RepubsubIO.js | 40 +- webapp/src/main/webapp/src/io/ScriptSrcIO.js | 34 +- webapp/src/main/webapp/src/io/ShortBusIO.js | 4 +- .../src/main/webapp/src/io/ShortBusInit.html | 4 +- webapp/src/main/webapp/src/json.js | 4 +- webapp/src/main/webapp/src/lang/array.js | 12 +- webapp/src/main/webapp/src/lang/assert.js | 2 +- webapp/src/main/webapp/src/lang/common.js | 2 +- webapp/src/main/webapp/src/lang/declare.js | 46 +- webapp/src/main/webapp/src/lang/extras.js | 8 +- webapp/src/main/webapp/src/lang/func.js | 2 +- webapp/src/main/webapp/src/lang/repr.js | 2 +- webapp/src/main/webapp/src/lang/type.js | 42 +- webapp/src/main/webapp/src/lfx/Animation.js | 62 +- webapp/src/main/webapp/src/lfx/__package__.js | 2 +- webapp/src/main/webapp/src/lfx/extras.js | 14 +- webapp/src/main/webapp/src/lfx/html.js | 62 +- webapp/src/main/webapp/src/lfx/toggle.js | 2 +- webapp/src/main/webapp/src/loader.js | 24 +- webapp/src/main/webapp/src/loader_xd.js | 14 +- webapp/src/main/webapp/src/logging/Logger.js | 4 +- .../src/main/webapp/src/reflect/reflection.js | 42 +- webapp/src/main/webapp/src/regexp.js | 64 +- webapp/src/main/webapp/src/rpc/JsonService.js | 4 +- webapp/src/main/webapp/src/rpc/RpcService.js | 10 +- webapp/src/main/webapp/src/storage.js | 248 ++--- webapp/src/main/webapp/src/storage/browser.js | 68 +- webapp/src/main/webapp/src/string/Builder.js | 24 +- webapp/src/main/webapp/src/string/extras.js | 4 +- webapp/src/main/webapp/src/style.js | 122 +-- webapp/src/main/webapp/src/svg.js | 2 +- .../src/main/webapp/src/text/textDirectory.js | 10 +- webapp/src/main/webapp/src/undo/browser.js | 30 +- webapp/src/main/webapp/src/uri/Uri.js | 14 +- .../webapp/src/uuid/LightweightGenerator.js | 12 +- .../webapp/src/uuid/NameBasedGenerator.js | 10 +- .../src/main/webapp/src/uuid/NilGenerator.js | 4 +- .../main/webapp/src/uuid/RandomGenerator.js | 4 +- .../webapp/src/uuid/TimeBasedGenerator.js | 28 +- webapp/src/main/webapp/src/uuid/Uuid.js | 54 +- .../main/webapp/src/validate/__package__.js | 12 +- webapp/src/main/webapp/src/validate/check.js | 26 +- webapp/src/main/webapp/src/validate/common.js | 30 +- .../src/main/webapp/src/validate/datetime.js | 8 +- webapp/src/main/webapp/src/validate/web.js | 2 +- .../webapp/src/widget/AccordionContainer.js | 8 +- webapp/src/main/webapp/src/widget/Button.js | 86 +- webapp/src/main/webapp/src/widget/Chart.js | 2 +- .../webapp/src/widget/CiviCrmDatePicker.js | 8 +- .../main/webapp/src/widget/ColorPalette.js | 24 +- webapp/src/main/webapp/src/widget/ComboBox.js | 10 +- .../src/main/webapp/src/widget/ContextMenu.js | 2 +- .../src/main/webapp/src/widget/DatePicker.js | 8 +- webapp/src/main/webapp/src/widget/Dialog.js | 20 +- .../src/main/webapp/src/widget/DomWidget.js | 56 +- .../webapp/src/widget/DropdownContainer.js | 8 +- .../webapp/src/widget/DropdownDatePicker.js | 14 +- webapp/src/main/webapp/src/widget/Editor2.js | 22 +- .../main/webapp/src/widget/Editor2Toolbar.js | 16 +- .../src/main/webapp/src/widget/FisheyeList.js | 32 +- .../main/webapp/src/widget/FloatingPane.js | 14 +- .../src/main/webapp/src/widget/HtmlWidget.js | 2 +- .../main/webapp/src/widget/InlineEditBox.js | 4 +- webapp/src/main/webapp/src/widget/Manager.js | 14 +- webapp/src/main/webapp/src/widget/Menu.js | 2 +- webapp/src/main/webapp/src/widget/MenuItem.js | 2 +- .../main/webapp/src/widget/MonthlyCalendar.js | 8 +- webapp/src/main/webapp/src/widget/Parse.js | 38 +- .../src/main/webapp/src/widget/PopUpButton.js | 44 +- .../webapp/src/widget/ResizableTextarea.js | 10 +- .../main/webapp/src/widget/ResizeHandle.js | 8 +- webapp/src/main/webapp/src/widget/RichText.js | 262 ++--- webapp/src/main/webapp/src/widget/Rounded.js | 106 +-- webapp/src/main/webapp/src/widget/Select.js | 2 +- webapp/src/main/webapp/src/widget/Show.js | 2 +- .../src/main/webapp/src/widget/ShowAction.js | 2 +- .../src/main/webapp/src/widget/ShowSlide.js | 2 +- .../src/main/webapp/src/widget/SlideShow.js | 4 +- .../main/webapp/src/widget/SplitContainer.js | 4 +- .../src/main/webapp/src/widget/SvgButton.js | 4 +- .../main/webapp/src/widget/TabContainer.js | 12 +- webapp/src/main/webapp/src/widget/Toggler.js | 8 +- webapp/src/main/webapp/src/widget/Toolbar.js | 20 +- .../webapp/src/widget/TreeRPCController.js | 8 +- webapp/src/main/webapp/src/widget/Widget.js | 54 +- .../src/main/webapp/src/widget/__package__.js | 6 +- .../src/widget/demoEngine/DemoContainer.js | 10 +- .../webapp/src/widget/demoEngine/DemoItem.js | 4 +- .../src/widget/demoEngine/DemoNavigator.js | 26 +- .../webapp/src/widget/demoEngine/DemoPane.js | 6 +- .../src/widget/demoEngine/SourcePane.js | 8 +- .../webapp/src/widget/html/AccordionPane.js | 6 +- .../main/webapp/src/widget/html/Button2.js | 2 +- .../main/webapp/src/widget/html/Checkbox.js | 2 +- .../main/webapp/src/widget/html/ComboBox.js | 132 +-- .../webapp/src/widget/html/ContentPane.js | 30 +- .../webapp/src/widget/html/ContextMenu.js | 20 +- .../main/webapp/src/widget/html/DatePicker.js | 62 +- .../main/webapp/src/widget/html/DocPane.js | 24 +- .../webapp/src/widget/html/DropdownButton.js | 10 +- .../main/webapp/src/widget/html/GoogleMap.js | 8 +- .../src/main/webapp/src/widget/html/Menu.js | 8 +- .../main/webapp/src/widget/html/MenuItem.js | 8 +- .../webapp/src/widget/html/MonthlyCalendar.js | 18 +- .../src/main/webapp/src/widget/html/Show.js | 12 +- .../main/webapp/src/widget/html/ShowAction.js | 2 +- .../main/webapp/src/widget/html/ShowSlide.js | 6 +- .../src/main/webapp/src/widget/html/Slider.js | 50 +- .../webapp/src/widget/html/SortableTable.js | 26 +- .../main/webapp/src/widget/html/Spinner.js | 2 +- .../main/webapp/src/widget/html/TaskBar.js | 6 +- .../main/webapp/src/widget/html/TimePicker.js | 6 +- .../main/webapp/src/widget/html/TitlePane.js | 4 +- .../main/webapp/src/widget/html/Tooltip.js | 54 +- .../main/webapp/src/widget/html/YahooMap.js | 8 +- .../main/webapp/src/widget/html/stabile.js | 16 +- .../src/main/webapp/src/widget/svg/Chart.js | 46 +- .../widget/templates/HtmlButtonTemplate.css | 2 +- .../src/widget/templates/HtmlCheckBox.html | 2 +- .../src/widget/templates/HtmlComboBox.css | 4 +- .../src/widget/templates/HtmlComboBox.html | 6 +- .../templates/HtmlContextMenuTemplate.html | 2 +- .../src/widget/templates/HtmlDatePicker.html | 30 +- .../src/widget/templates/HtmlDialog.html | 8 +- .../src/widget/templates/HtmlDocPane.css | 2 +- .../templates/HtmlDropDownButtonTemplate.html | 2 +- .../widget/templates/HtmlEditorToolbar.css | 2 +- .../widget/templates/HtmlEditorToolbar.html | 12 +- .../templates/HtmlEditorToolbarOneline.html | 42 +- .../widget/templates/HtmlFloatingPane.html | 2 +- .../widget/templates/HtmlMonthlyCalendar.html | 28 +- .../templates/HtmlResizableTextarea.html | 4 +- .../src/widget/templates/HtmlResizeHandle.css | 2 +- .../webapp/src/widget/templates/HtmlShow.css | 2 +- .../webapp/src/widget/templates/HtmlShow.html | 2 +- .../src/widget/templates/HtmlShowSlide.css | 2 +- .../src/widget/templates/HtmlShowSlide.html | 2 +- .../src/widget/templates/HtmlSlideShow.css | 2 +- .../src/widget/templates/HtmlSlideShow.html | 10 +- .../src/widget/templates/HtmlSlider.css | 44 +- .../src/widget/templates/HtmlSpinner.css | 2 +- .../src/widget/templates/HtmlTaskBar.css | 2 +- .../templates/HtmlTaskBarItemTemplate.html | 2 +- .../src/widget/templates/HtmlTimePicker.css | 2 +- .../src/widget/templates/HtmlTimePicker.html | 10 +- .../widget/templates/HtmlTooltipTemplate.html | 2 +- .../main/webapp/src/widget/templates/Menu.css | 2 +- webapp/src/main/webapp/src/widget/validate.js | 170 ++-- .../src/main/webapp/src/widget/vml/Chart.js | 28 +- webapp/src/main/webapp/src/xml/Parse.js | 24 +- webapp/src/main/webapp/src/xml/domUtil.js | 4 +- webapp/src/main/webapp/src/xml/htmlUtil.js | 22 +- webapp/src/main/webapp/src/xml/svgUtil.js | 8 +- webapp/src/main/webapp/templates/README.txt | 2 +- .../webapp/templates/alpha/alphaIndex.jsp | 24 +- .../main/webapp/templates/edit/formBasic.js | 2 +- .../main/webapp/templates/edit/formBasic.jsp | 16 +- .../webapp/templates/edit/formContact.jsp | 14 +- .../edit/specific/applicationBean_retry.jsp | 10 +- .../specific/cardinalityRestriction_retry.jsp | 2 +- .../templates/edit/specific/classes_edit.jsp | 18 +- .../edit/specific/dataprops_edit.jsp | 16 +- .../templates/edit/specific/entity_retry.jsp | 4 +- .../edit/specific/entity_retry_init.jsp | 2 +- .../templates/edit/specific/ents_edit.jsp | 44 +- .../edit/specific/fauxProperty_retry.jsp | 4 +- .../specific/hasValueRestriction_retry.jsp | 8 +- .../templates/edit/specific/merge_result.jsp | 2 +- .../edit/specific/ontology_retry.jsp | 2 +- .../specific/properties2properties_retry.jsp | 4 +- .../edit/specific/property_retry.jsp | 14 +- .../templates/edit/specific/props_edit.jsp | 18 +- .../templates/edit/specific/upload_rdf.jsp | 12 +- .../edit/specific/user_retry_head.jsp | 12 +- .../templates/entity/entityListForTabs.jsp | 20 +- .../templates/entity/entityListPages.jsp | 20 +- .../main/webapp/templates/error/error500.jsp | 2 +- .../freemarker/ajax/autocompleteResults.ftl | 4 +- .../templates/freemarker/body/about.ftl | 4 +- .../userAccounts-acctCreatedEmail.ftl | 6 +- ...rAccounts-acctCreatedExternalOnlyEmail.ftl | 2 +- .../body/accounts/userAccounts-add.ftl | 12 +- .../userAccounts-associateProfilePanel.ftl | 26 +- .../userAccounts-confirmEmailChangedEmail.ftl | 4 +- .../accounts/userAccounts-createPassword.ftl | 6 +- .../body/accounts/userAccounts-edit.ftl | 10 +- .../userAccounts-firstTimeExternal.ftl | 10 +- .../userAccounts-firstTimeExternalEmail.ftl | 2 +- .../body/accounts/userAccounts-list.ftl | 40 +- .../body/accounts/userAccounts-myAccount.ftl | 18 +- .../accounts/userAccounts-myProxiesPanel.ftl | 22 +- .../userAccounts-passwordCreatedEmail.ftl | 2 +- ...serAccounts-passwordResetCompleteEmail.ftl | 2 +- ...userAccounts-passwordResetPendingEmail.ftl | 30 +- .../accounts/userAccounts-resetPassword.ftl | 6 +- .../body/admin/admin-restrictLogins.ftl | 6 +- .../freemarker/body/admin/admin-showAuth.ftl | 4 +- .../body/admin/admin-showSources.ftl | 18 +- .../body/admin/admin-showThreads.ftl | 2 +- .../freemarker/body/admin/searchIndex.ftl | 6 +- .../body/admin/searchIndexStatus.ftl | 10 +- .../body/admin/startupStatus-display.ftl | 16 +- .../body/admin/startupStatus-displayRaw.ftl | 16 +- .../templates/freemarker/body/classGroups.ftl | 4 +- .../body/contactForm/contactForm-backup.ftl | 4 +- .../contactForm/contactForm-confirmation.ftl | 2 +- .../body/contactForm/contactForm-email.ftl | 12 +- .../body/contactForm/contactForm-error.ftl | 6 +- .../body/contactForm/contactForm-form.ftl | 20 +- .../body/datatools/datatools-dumpRestore.ftl | 10 +- .../body/displayEdit/displayConfig.ftl | 12 +- .../freemarker/body/error/error-display.ftl | 16 +- .../freemarker/body/error/error-email.ftl | 22 +- .../freemarker/body/error/error-message.ftl | 2 +- .../freemarker/body/error/error-standard.ftl | 2 +- .../freemarker/body/error/error-titled.ftl | 2 +- .../webapp/templates/freemarker/body/home.ftl | 2 +- .../imageUpload/imageUpload-cropImage.ftl | 26 +- .../body/imageUpload/imageUpload-newImage.ftl | 12 +- .../imageUpload/imageUpload-replaceImage.ftl | 6 +- .../body/individual/individual-menu.ftl | 20 +- .../body/individual/individual-vitro.ftl | 14 +- .../freemarker/body/individual/individual.ftl | 2 +- .../individual/manageLabelsForIndividual.ftl | 28 +- .../manageLabelsForIndividualAddForm.ftl | 12 +- .../manageLabelsForIndividualMacros.ftl | 16 +- ...ageLabelsForIndividualSubmissionErrors.ftl | 2 +- .../manageLabelsForIndividualTerms.ftl | 2 +- .../individual/viewLabelsForIndividual.ftl | 10 +- .../body/individualList-checkForData.ftl | 8 +- .../freemarker/body/individualList.ftl | 14 +- .../freemarker/body/login/adminLogin.ftl | 24 +- .../body/login/fakeExternalAuth.ftl | 6 +- .../templates/freemarker/body/login/login.ftl | 2 +- .../body/manageproxies/manageProxies-list.ftl | 68 +- .../templates/freemarker/body/menuN3Edit.ftl | 8 +- .../freemarker/body/menupage/emptyPage.ftl | 4 +- .../individualsForClassesMenuPage.ftl | 8 +- .../menupage/menupage--defaultFixedHtml.ftl | 2 +- .../menupage--defaultSearchIndividuals.ftl | 14 +- .../body/menupage/menupage--defaultSparql.ftl | 4 +- .../menupage--exampleMultipleContentTypes.ftl | 24 +- .../body/menupage/page-classgroup.ftl | 8 +- .../body/menupage/page-pageList.ftl | 26 +- .../body/message/message-titled.ftl | 2 +- .../freemarker/body/message/message.ftl | 2 +- .../body/pagemanagement/page-pageList.ftl | 26 +- .../body/pagemanagement/pageList.ftl | 36 +- .../account/userAccounts-accountsNav.ftl | 24 +- .../body/partials/browse-classgroups.ftl | 18 +- .../partials/classgroups-checkForData.ftl | 8 +- .../freemarker/body/partials/dump/dump.ftl | 50 +- .../individual/individual-adminPanel.ftl | 6 +- .../individual/individual-properties.ftl | 10 +- .../individual-property-group-menus.ftl | 14 +- .../individual-property-group-tabs.ftl | 4 +- .../individual-propertyGroupMenu.ftl | 10 +- .../individual/propStatement-dataDefault.ftl | 8 +- .../individual/propStatement-default.ftl | 8 +- .../individual/propStatement-hasElement.ftl | 10 +- .../individual/propStatement-simple.ftl | 2 +- .../partials/menupage/menupage-browse.ftl | 4 +- .../menupage/menupage-checkForData.ftl | 6 +- .../partials/menupage/menupage-scripts.ftl | 2 +- .../menupage-vClassesInClassgroup.ftl | 2 +- .../partials/shortview/view-index-default.ftl | 2 +- .../shortview/view-search-default.ftl | 2 +- .../freemarker/body/recomputeInferences.ftl | 2 +- .../freemarker/body/revisionInfo.ftl | 10 +- .../templates/freemarker/body/sdbSetup.ftl | 2 +- .../body/search/search-csvResults.ftl | 2 +- .../freemarker/body/search/search-error.ftl | 2 +- .../freemarker/body/search/search-help.ftl | 16 +- .../body/search/search-pagedResults.ftl | 18 +- .../body/search/search-xmlResults.ftl | 12 +- .../body/search/searchService-help.ftl | 8 +- .../siteAdmin/siteAdmin-advancedDataTools.ftl | 14 +- .../siteAdmin/siteAdmin-classHierarchy.ftl | 8 +- .../body/siteAdmin/siteAdmin-dataInput.ftl | 4 +- .../siteAdmin-fauxPropertiesList.ftl | 14 +- .../body/siteAdmin/siteAdmin-main.ftl | 2 +- .../siteAdmin-objectPropHierarchy.ftl | 12 +- .../siteAdmin/siteAdmin-ontologyEditor.ftl | 16 +- .../siteAdmin/siteAdmin-siteConfiguration.ftl | 22 +- .../siteAdmin/siteAdmin-siteMaintenance.ftl | 18 +- .../templates/freemarker/body/termsOfUse.ftl | 32 +- .../freemarker/body/unrecognizedUser.ftl | 2 +- .../freemarker/edit/dateTimeWithPrecision.ftl | 8 +- .../edit/forms/autoCompleteObjectPropForm.ftl | 32 +- .../edit/forms/confirmDeletePropertyForm.ftl | 12 +- .../freemarker/edit/forms/css/customForm.css | 18 +- .../forms/css/customFormWithAutocomplete.css | 8 +- .../edit/forms/customErrorMessages.ftl | 2 +- .../edit/forms/dateTimeEntryForm.ftl | 2 +- .../edit/forms/dateTimeIntervalForm.ftl | 12 +- .../edit/forms/dateTimeValueForm.ftl | 12 +- .../forms/defaultAddMissingIndividualForm.ftl | 6 +- .../edit/forms/defaultDataPropertyForm.ftl | 28 +- .../edit/forms/defaultDeletePropertyForm.ftl | 20 +- .../edit/forms/defaultFormScripts.ftl | 4 +- .../forms/defaultOfferCreateNewOptionForm.ftl | 28 +- .../edit/forms/defaultPropertyForm.ftl | 6 +- .../forms/js/customFormWithAutocomplete.js | 198 ++-- .../edit/forms/js/defaultDataPropertyUtils.js | 52 +- .../menuManagement--classIntersections.ftl | 2 +- .../freemarker/edit/forms/menuManagement.ftl | 34 +- .../edit/forms/newIndividualForm.ftl | 6 +- .../pageManagement--browseClassGroups.ftl | 18 +- .../pageManagement--contentTemplates.ftl | 2 +- .../pageManagement--customDataScript.ftl | 4 +- .../freemarker/edit/forms/pageManagement.ftl | 40 +- .../freemarker/edit/forms/rdfTypeForm.ftl | 6 +- .../freemarker/edit/forms/rdfsLabelForm.ftl | 10 +- .../freemarker/edit/missingEditConfig.ftl | 4 +- .../templates/freemarker/lib/lib-datetime.ftl | 46 +- .../templates/freemarker/lib/lib-form.ftl | 28 +- .../freemarker/lib/lib-home-page.ftl | 6 +- .../templates/freemarker/lib/lib-json.ftl | 6 +- .../templates/freemarker/lib/lib-list.ftl | 58 +- .../freemarker/lib/lib-microformats.ftl | 2 +- .../freemarker/lib/lib-properties.ftl | 64 +- .../templates/freemarker/lib/lib-sequence.ftl | 2 +- .../templates/freemarker/lib/lib-string.ftl | 2 +- .../freemarker/lib/lib-vitro-form.ftl | 2 +- .../templates/freemarker/page/page-home.ftl | 2 +- .../webapp/templates/freemarker/page/page.ftl | 22 +- .../freemarker/page/partials/breadcrumbs.ftl | 2 +- .../freemarker/page/partials/developer.ftl | 2 +- .../page/partials/developerPanel.ftl | 66 +- .../freemarker/page/partials/doctype.html | 4 +- .../freemarker/page/partials/headScripts.ftl | 2 +- .../page/partials/languageSelector.ftl | 10 +- .../freemarker/page/partials/pageSetup.ftl | 10 +- .../freemarker/page/partials/search.ftl | 2 +- .../freemarker/page/partials/stylesheets.ftl | 2 +- .../freemarker/page/partials/subMenuLinks.ftl | 4 +- .../freemarker/page/partials/version.ftl | 2 +- .../freemarker/widgets/widget-SelectList.ftl | 8 +- .../freemarker/widgets/widget-browse.ftl | 22 +- .../freemarker/widgets/widget-login.ftl | 40 +- .../freemarker/widgets/widget-test.ftl | 6 +- .../main/webapp/templates/page/basicPage.jsp | 18 +- .../main/webapp/templates/page/blankPage.jsp | 22 +- .../main/webapp/templates/page/bodyMsg.jsp | 12 +- .../src/main/webapp/templates/page/debug.jsp | 6 +- .../main/webapp/templates/page/doctype.jsp | 4 +- .../page/freemarkerTransition/footer.jsp | 4 +- .../page/freemarkerTransition/identity.jsp | 2 +- .../page/freemarkerTransition/menu.jsp | 4 +- .../webapp/templates/page/headContent.jsp | 8 +- .../webapp/templates/parts/emailUsers.jsp | 4 +- .../main/webapp/themes/vitro/css/reset.css | 34 +- .../main/webapp/themes/vitro/css/screen.css | 16 +- .../webapp/themes/vitro/css/vitroTheme.css | 94 +- .../webapp/themes/vitro/templates/flash.ftl | 2 +- .../themes/vitro/templates/identity.ftl | 2 +- .../themes/vitro/templates/page-home.ftl | 8 +- .../webapp/themes/vitro/templates/page.ftl | 4 +- .../webapp/themes/vitro/templates/search.ftl | 6 +- webapp/src/main/webapp/xslt/xml2rdf.xsl | 90 +- 1753 files changed, 24077 insertions(+), 24077 deletions(-) diff --git a/api/src/main/java/edu/cornell/mannlib/semservices/bo/Concept.java b/api/src/main/java/edu/cornell/mannlib/semservices/bo/Concept.java index 1b5e9c915..795496f11 100644 --- a/api/src/main/java/edu/cornell/mannlib/semservices/bo/Concept.java +++ b/api/src/main/java/edu/cornell/mannlib/semservices/bo/Concept.java @@ -20,7 +20,7 @@ public class Concept { private List exactMatchURIList; private List closeMatchURIList; private List altLabelList; - + /** * default constructor */ @@ -30,7 +30,7 @@ public class Concept { this.exactMatchURIList = new ArrayList(); this.closeMatchURIList = new ArrayList(); } - + /** * @return the conceptId */ diff --git a/api/src/main/java/edu/cornell/mannlib/semservices/util/SKOSUtils.java b/api/src/main/java/edu/cornell/mannlib/semservices/util/SKOSUtils.java index 5b8955a87..028b59fed 100644 --- a/api/src/main/java/edu/cornell/mannlib/semservices/util/SKOSUtils.java +++ b/api/src/main/java/edu/cornell/mannlib/semservices/util/SKOSUtils.java @@ -263,4 +263,4 @@ public class SKOSUtils { return URIs; } -} \ No newline at end of file +} diff --git a/api/src/main/java/edu/cornell/mannlib/vedit/beans/ButtonForm.java b/api/src/main/java/edu/cornell/mannlib/vedit/beans/ButtonForm.java index 8728d3fa4..d9a7fc161 100644 --- a/api/src/main/java/edu/cornell/mannlib/vedit/beans/ButtonForm.java +++ b/api/src/main/java/edu/cornell/mannlib/vedit/beans/ButtonForm.java @@ -8,35 +8,35 @@ public class ButtonForm { private String label = "no label specified"; private String cssClass = null; private HashMap params = null; - + public ButtonForm() { action = ""; // submits to same page cssClass = null; label = "no label specified"; params = null; } - + public ButtonForm(String actionStr, String classStr, String labelStr, HashMap paramMap) { action = actionStr; cssClass = classStr; // can be null label = labelStr; params = paramMap; } - + public String getAction(){ return action; } public void setAction(String s){ action = s; } - + public String getLabel(){ return label; } public void setLabel(String s){ label = s; } - + public String getCssClass(){ if (cssClass==null){ return ""; @@ -46,7 +46,7 @@ public class ButtonForm { public void setCssClass(String s){ cssClass=s; } - + public HashMap getParams(){ return params; } diff --git a/api/src/main/java/edu/cornell/mannlib/vedit/beans/EditProcessObject.java b/api/src/main/java/edu/cornell/mannlib/vedit/beans/EditProcessObject.java index 20ce0b49d..0e3190e8c 100644 --- a/api/src/main/java/edu/cornell/mannlib/vedit/beans/EditProcessObject.java +++ b/api/src/main/java/edu/cornell/mannlib/vedit/beans/EditProcessObject.java @@ -63,7 +63,7 @@ public class EditProcessObject implements Serializable { private Map requestParameterMap = null; private Map badValueMap = new HashMap(); - + private Map attributeMap = new HashMap(); private Method getMethod = null; @@ -311,13 +311,13 @@ public class EditProcessObject implements Serializable { public Map getAttributeMap() { return this.attributeMap; } - + public Object getAttribute(String key) { return this.attributeMap.get(key); } - + public void setAttribute(String key, Object value) { this.attributeMap.put(key, value); } - + } diff --git a/api/src/main/java/edu/cornell/mannlib/vedit/beans/Option.java b/api/src/main/java/edu/cornell/mannlib/vedit/beans/Option.java index 406d94513..d4547c35b 100644 --- a/api/src/main/java/edu/cornell/mannlib/vedit/beans/Option.java +++ b/api/src/main/java/edu/cornell/mannlib/vedit/beans/Option.java @@ -37,7 +37,7 @@ public class Option implements Serializable { //default constructor public Option() { } - + public Option (String value, String body, boolean selected) { this.value = value; this.body = body; diff --git a/api/src/main/java/edu/cornell/mannlib/vedit/controller/BaseEditController.java b/api/src/main/java/edu/cornell/mannlib/vedit/controller/BaseEditController.java index 2eb753a48..65ecd722d 100644 --- a/api/src/main/java/edu/cornell/mannlib/vedit/controller/BaseEditController.java +++ b/api/src/main/java/edu/cornell/mannlib/vedit/controller/BaseEditController.java @@ -37,9 +37,9 @@ import edu.cornell.mannlib.vitro.webapp.dao.WebappDaoFactory; public class BaseEditController extends VitroHttpServlet { public static final boolean FORCE_NEW = true; // when you know you're starting a new edit process - + public static final String JSP_PREFIX = "/templates/edit/specific/"; - + protected static DateFormat DISPLAY_DATE_FORMAT = new SimpleDateFormat("MM/dd/yyyy"); protected static final int BASE_10 = 10; @@ -57,7 +57,7 @@ public class BaseEditController extends VitroHttpServlet { protected EditProcessObject createEpo(HttpServletRequest request) { return createEpo(request, false); } - + protected EditProcessObject createEpo(HttpServletRequest request, boolean forceNew) { /* this is actually a bit of a misnomer, because we will reuse an epo if an epoKey parameter is passed */ @@ -156,22 +156,22 @@ public class BaseEditController extends VitroHttpServlet { } } } - + public List