updated from trunk

solr/exampleSolr/conf/schema.xml

@@ -486,6 +486,8 @@
 <field name="nameRaw" type="string" indexed="true" stored="true" multiValued="true"/>
 <!-- RY Not sure if we need to store nameLowercase -->
 <field name="nameLowercase" type="string" indexed="true" stored="true" multiValued="true"/>
+<!-- A sortable version of nameLowercase -->
+<field name="nameLowercaseSingleValued" type="lowercase" indexed="true" stored="false" multiValued="false" /> 
 <field name="nameUnstemmed" type="text" indexed="true" stored="false" multiValued="true"/>
 <field name="nameStemmed" type="text" indexed="true" stored="false" multiValued="true"/>
 <field name="acNameUnstemmed" type="textUnstemmed" indexed="true" stored="false" multiValued="true"/>
@@ -504,6 +506,8 @@
 <field name="modType" type="ignored"/>
 <field name="JCLASS" type="ignored"/>
 
+ <!-- Copy nameLowercase to sortable field. -->
+    <copyField source="nameLowercase" dest="nameLowercaseSingleValued" />
 <!-- ****************************  End Vitro Fields *************************** -->
 
 

webapp/config/web.xml

@@ -886,13 +886,19 @@
     <url-pattern>/individuallist</url-pattern>
   </servlet-mapping>
   
-  <servlet>
+    <servlet>
-    <servlet-name>EntityURLController</servlet-name>
+    <servlet-name>IndividualListRdf</servlet-name>
     <servlet-class>edu.cornell.mannlib.vitro.webapp.controller.EntityURLController</servlet-class>
+    </servlet>
+  <!--
+  <servlet>
+    <servlet-name>IndividualListRdf</servlet-name>
+    <servlet-class>edu.cornell.mannlib.vitro.webapp.controller.IndividualListRdfController</servlet-class>
   </servlet>
+  -->
   <servlet-mapping>
-    <servlet-name>EntityURLController</servlet-name>
+    <servlet-name>IndividualListRdf</servlet-name>
-    <url-pattern>/entityurl/*</url-pattern>
+    <url-pattern>/listrdf/*</url-pattern>
   </servlet-mapping>
   <!--
   <servlet>

webapp/src/edu/cornell/mannlib/vitro/webapp/controller/EntityURLController.java

@@ -44,18 +44,18 @@ public void doGet (HttpServletRequest req, HttpServletResponse res) throws IOExc
 	String url = req.getRequestURI().substring(req.getContextPath().length());
 	ContentType contentType = checkForRequestType(req.getHeader("accept"));
 	
-	if(Pattern.compile("^/entityurl/$").matcher(url).matches()){
+	if(Pattern.compile("^/listrdf/$").matcher(url).matches()){
 		String redirectURL = null;
 		if(contentType!=null){
 			if ( RDFXML_MIMETYPE.equals(contentType.getMediaType()))
-				redirectURL = "/entityurl/entityurl.rdf";
+				redirectURL = "/listrdf/listrdf.rdf";
 			else if( N3_MIMETYPE.equals(contentType.getMediaType()))
-				redirectURL = "/entityurl/entityurl.n3";
+				redirectURL = "/listrdf/listrdf.n3";
 			else if ( TTL_MIMETYPE.equals(contentType.getMediaType()))
-				redirectURL = "/entityurl/entityurl.ttl";
+				redirectURL = "/listrdf/listrdf.ttl";
 		}
 		else{
-			redirectURL = "/entityurl/entityrurl.rdf";
+			redirectURL = "/listrdf/listrdf.rdf";
 		}
 		
 		 String hn = req.getHeader("Host");

webapp/src/edu/cornell/mannlib/vitro/webapp/controller/IndividualListRdfController.java

@@ -0,0 +1,82 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
+package edu.cornell.mannlib.vitro.webapp.controller;
+import java.io.IOException;
+
+import javax.servlet.ServletException;
+import javax.servlet.http.HttpServletRequest;
+import javax.servlet.http.HttpServletResponse;
+
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
+import org.apache.solr.client.solrj.SolrQuery;
+import org.apache.solr.client.solrj.SolrServer;
+import org.apache.solr.client.solrj.response.QueryResponse;
+import org.apache.solr.common.SolrDocument;
+import org.apache.solr.common.SolrDocumentList;
+
+import com.hp.hpl.jena.rdf.model.Model;
+import com.hp.hpl.jena.rdf.model.ModelFactory;
+import com.hp.hpl.jena.rdf.model.RDFNode;
+import com.hp.hpl.jena.rdf.model.Resource;
+import com.hp.hpl.jena.rdf.model.ResourceFactory;
+import com.hp.hpl.jena.vocabulary.RDF;
+
+import edu.cornell.mannlib.vitro.webapp.search.lucene.Entity2LuceneDoc.VitroLuceneTermNames;
+import edu.cornell.mannlib.vitro.webapp.search.solr.SolrSetup;
+
+public class IndividualListRdfController extends VitroHttpServlet {
+
+    private static final long serialVersionUID = 1L;
+    private static final Log log = LogFactory.getLog(IndividualListRdfController.class.getName());
+    
+	public static final int ENTITY_LIST_CONTROLLER_MAX_RESULTS = 30000;
+	    
+    public void doGet (HttpServletRequest req, HttpServletResponse res) throws IOException, ServletException {
+    	    
+    	// Make the query
+    	String classUri = (String) getServletContext().getAttribute("classuri");
+    	String queryStr = VitroLuceneTermNames.RDFTYPE + ":\"" + classUri + "\"";
+    	SolrQuery query = new SolrQuery(queryStr);
+    	query.setStart(0)
+    	     .setRows(ENTITY_LIST_CONTROLLER_MAX_RESULTS)
+    	     .setFields(VitroLuceneTermNames.URI);
+    	     // For now, we're only displaying the url, so no need to sort.
+    	     //.setSortField(VitroLuceneTermNames.NAME_LOWERCASE_SINGLE_VALUED);
+
+    	// Execute the query
+        SolrServer solr = SolrSetup.getSolrServer(getServletContext());
+        QueryResponse response = null;
+        
+        try {
+            response = solr.query(query);            
+        } catch (Throwable t) {
+            log.error(t, t);            
+        }
+
+        if ( response == null ) {         
+            throw new ServletException("Could not run search in IndividualListRdfController");        
+        }
+
+        SolrDocumentList docs = response.getResults();
+        
+        if (docs == null) {
+            throw new ServletException("Could not run search in IndividualListRdfController");    
+        }
+
+        Model model = ModelFactory.createDefaultModel();
+        for (SolrDocument doc : docs) {
+            String uri = doc.get(VitroLuceneTermNames.URI).toString();
+            Resource resource = ResourceFactory.createResource(uri);
+            RDFNode node = (RDFNode) ResourceFactory.createResource(classUri);
+            model.add(resource, RDF.type, node);
+        }
+
+        res.setContentType(RDFXML_MIMETYPE); 
+    	model.write(res.getOutputStream(), "RDF/XML");
+    }
+    
+    public void doPost (HttpServletRequest req, HttpServletResponse res) throws IOException, ServletException{
+    	doGet(req,res);
+    }
+    
+}

webapp/src/edu/cornell/mannlib/vitro/webapp/controller/JSONServlet.java

@@ -233,7 +233,7 @@ public class JSONServlet extends VitroHttpServlet {
             rObj.put("alpha", map.get("alpha"));
                             
             List<Individual> inds = (List<Individual>)map.get("entities");
-            List<IndividualTemplateModel> indsTm = new ArrayList<IndividualTemplateModel>();
+
             JSONArray jInds = new JSONArray();
             for(Individual ind : inds ){
                 JSONObject jo = new JSONObject();

webapp/src/edu/cornell/mannlib/vitro/webapp/controller/VitroHttpServlet.java

@@ -225,11 +225,14 @@ public class VitroHttpServlet extends HttpServlet {
 	 * A child class may call this if logging is set to debug level.
 	 */
 	protected void dumpRequestParameters(HttpServletRequest req) {
+		Log subclassLog = LogFactory.getLog(this.getClass());
+		
 		@SuppressWarnings("unchecked")
 		Map<String, String[]> map = req.getParameterMap();
+		
 		for (String key : map.keySet()) {
 			String[] values = map.get(key);
-			log.debug("Parameter '" + key + "' = "
+			subclassLog.debug("Parameter '" + key + "' = "
 					+ Arrays.deepToString(values));
 		}
 	}

webapp/src/edu/cornell/mannlib/vitro/webapp/controller/accounts/UserAccountsAddPage.java

@@ -13,7 +13,14 @@ import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.Res
 import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
 
 /**
- * TODO
+ * Handle the "Add new account" form display and submission.
+ * 
+ * TODO Associate a profile from this account
+ * 
+ * TODO Handle sending of email.
+ * 
+ * TODO Handle initial password set if email isn't available. Set password
+ * fields, change-required flag, account is active.
  */
 public class UserAccountsAddPage extends UserAccountsPage {
 	private static final String PARAMETER_SUBMIT = "submitAdd";
@@ -145,4 +152,20 @@ public class UserAccountsAddPage extends UserAccountsPage {
 		return new TemplateResponseValues(TEMPLATE_NAME, body);
 	}
 
+	/**
+	 * @return
+	 */
+	public UserAccount getAddedAccount() {
+		// TODO Auto-generated method stub
+		throw new RuntimeException("UserAccountsAddPage.getAddedAccount() not implemented.");
+	}
+
+	/**
+	 * @return
+	 */
+	public boolean wasPasswordEmailSent() {
+		// TODO Auto-generated method stub
+		throw new RuntimeException("UserAccountsAddPage.wasPasswordEmailSent() not implemented.");
+	}
+
 }

webapp/src/edu/cornell/mannlib/vitro/webapp/controller/accounts/UserAccountsController.java

@@ -9,7 +9,6 @@ import org.apache.commons.logging.LogFactory;
 
 import edu.cornell.mannlib.vitro.webapp.auth.requestedAction.Actions;
 import edu.cornell.mannlib.vitro.webapp.auth.requestedAction.usepages.ManageUserAccounts;
-import edu.cornell.mannlib.vitro.webapp.beans.UserAccount;
 import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
 import edu.cornell.mannlib.vitro.webapp.controller.freemarker.FreemarkerHttpServlet;
 import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
@@ -49,7 +48,13 @@ public class UserAccountsController extends FreemarkerHttpServlet {
 			}
 
 		} else if (ACTION_EDIT.equals(action)) {
-			return new UserAccountsEditPage(vreq).showPage();
+			UserAccountsEditPage page = new UserAccountsEditPage(vreq);
+			page.parseParametersAndValidate();
+			if (page.isSubmit() && page.isValid()) {
+				return editAccountAndShowList(vreq, page);
+			} else {
+				return page.showPage();
+			}
 
 		} else if (ACTION_DELETE.equals(action)) {
 			UserAccountsDeleter deleter = new UserAccountsDeleter(vreq);
@@ -66,10 +71,18 @@ public class UserAccountsController extends FreemarkerHttpServlet {
 
 	private ResponseValues addAccountAndShowList(VitroRequest vreq,
 			UserAccountsAddPage addPage) {
-		UserAccount userAccount = addPage.createNewAccount();
+		addPage.createNewAccount();
 
 		UserAccountsListPage listPage = new UserAccountsListPage(vreq);
-		return listPage.showPageWithNewAccount(userAccount);
+		return listPage.showPageWithNewAccount(addPage.getAddedAccount(),
+				addPage.wasPasswordEmailSent());
 	}
 
+	private ResponseValues editAccountAndShowList(VitroRequest vreq,
+			UserAccountsEditPage editPage) {
+		editPage.updateAccount();
+		UserAccountsListPage listPage = new UserAccountsListPage(vreq);
+		return listPage.showPageWithUpdatedAccount(
+				editPage.getUpdatedAccount(), editPage.wasPasswordEmailSent());
+	}
 }

webapp/src/edu/cornell/mannlib/vitro/webapp/controller/accounts/UserAccountsDeleter.java

@@ -7,7 +7,9 @@ import java.util.Collection;
 import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
 
 /**
- * TODO
+ * TODO delete and kick to Accounts list with message, telling how many were
+ * deleted. If there was a problem, the user will need to infer it from the
+ * count??
  */
 public class UserAccountsDeleter extends UserAccountsPage {
 
@@ -21,7 +23,8 @@ public class UserAccountsDeleter extends UserAccountsPage {
 	 */
 	public Collection<String> delete() {
 		// TODO Auto-generated method stub
-		throw new RuntimeException("UserAccountsDeleter.delete() not implemented.");
+		throw new RuntimeException(
+				"UserAccountsDeleter.delete() not implemented.");
 	}
 
 }

webapp/src/edu/cornell/mannlib/vitro/webapp/controller/accounts/UserAccountsEditPage.java

@@ -2,12 +2,23 @@
 
 package edu.cornell.mannlib.vitro.webapp.controller.accounts;
 
+import edu.cornell.mannlib.vitro.webapp.beans.UserAccount;
 import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
 import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
 import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
 
 /**
- * TODO
+ * TODO present the form. Get the submission. 
+ * 
+ * TODO If email is available, present the reset flag with message templage, and send email
+ * 
+ * TODO if email is not available, allow password change with checks for validity
+ * 
+ * TODO If successful, go to AccountsList with message and optional password message.
+ * 
+ * TODO if unsuccessful, go back to the page, with errors.
+ * 
+ * TODO How much of this can be shared with AddPage? Email templates?
  */
 public class UserAccountsEditPage extends UserAccountsPage {
 	private static final String TEMPLATE_NAME = "userAccounts-edit.ftl";
@@ -20,5 +31,53 @@ public class UserAccountsEditPage extends UserAccountsPage {
 		return new TemplateResponseValues(TEMPLATE_NAME);
 	}
 
+	/**
+	 * @return
+	 */
+	public UserAccount updateAccount() {
+		// TODO Auto-generated method stub
+		throw new RuntimeException("UserAccountsEditPage.updateAccount() not implemented.");
+	}
+
+	/**
+	 * @return
+	 */
+	public boolean wasPasswordEmailSent() {
+		// TODO Auto-generated method stub
+		throw new RuntimeException("UserAccountsEditPage.wasPasswordEmailSent() not implemented.");
+	}
+
+	/**
+	 * @return
+	 */
+	public UserAccount getUpdatedAccount() {
+		// TODO Auto-generated method stub
+		throw new RuntimeException("UserAccountsEditPage.getUpdatedAccount() not implemented.");
+	}
+
+	/**
+	 * 
+	 */
+	public void parseParametersAndValidate() {
+		// TODO Auto-generated method stub
+		throw new RuntimeException("UserAccountsEditPage.parseParametersAndValidate() not implemented.");
+	}
+
+	/**
+	 * @return
+	 */
+	public boolean isValid() {
+		// TODO Auto-generated method stub
+		throw new RuntimeException("UserAccountsEditPage.isValid() not implemented.");
+	}
+
+	/**
+	 * @return
+	 */
+	public boolean isSubmit() {
+		// TODO Auto-generated method stub
+		throw new RuntimeException("UserAccountsEditPage.isSubmit() not implemented.");
+	}
+
 
 }

webapp/src/edu/cornell/mannlib/vitro/webapp/controller/accounts/UserAccountsListPage.java

@@ -27,6 +27,11 @@ import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.Tem
 
 /**
  * Handle the List page.
+ * 
+ * TODO: agree with Manolo how to do the column heads as links that change the
+ * sort order
+ * 
+ * TODO: auto-complete
  */
 public class UserAccountsListPage extends UserAccountsPage {
 	private static final Log log = LogFactory
@@ -87,7 +92,8 @@ public class UserAccountsListPage extends UserAccountsPage {
 	/**
 	 * We just came from adding a new account. Show the list with a message.
 	 */
-	public ResponseValues showPageWithNewAccount(UserAccount userAccount) {
+	public ResponseValues showPageWithNewAccount(UserAccount userAccount,
+			boolean emailWasSent) {
 		UserAccountsSelection selection = UserAccountsSelector.select(
 				userAccountsModel, criteria);
 		Map<String, Object> body = buildTemplateBodyMap(selection);
@@ -98,6 +104,15 @@ public class UserAccountsListPage extends UserAccountsPage {
 		return new TemplateResponseValues(TEMPLATE_NAME, body);
 	}
 
+	/**
+	 * We just came from editing an account. Show the list with a message.
+	 */
+	public ResponseValues showPageWithUpdatedAccount(UserAccount userAccount,
+			boolean emailWasSent) {
+		throw new RuntimeException(
+				"UserAccountsListPage.showPageWithUpdatedAccount not implemented.");
+	}
+
 	/**
 	 * We just came from deleting accounts. Show the list with a message.
 	 */

webapp/src/edu/cornell/mannlib/vitro/webapp/controller/accounts/UserAccountsSetPasswordPage.java

@@ -0,0 +1,21 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
+
+package edu.cornell.mannlib.vitro.webapp.controller.accounts;
+
+import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
+
+/**
+ * TODO If hash is not valid display bogus message.
+ * 
+ * TODO Set the password fields, reset the expire time, set account active, kick
+ * to home page with message. Send confirmation email.
+ * 
+ * TODO How do we know "createPassword" from "setPassword"? a parameter? or just by account status?
+ */
+public class UserAccountsSetPasswordPage extends UserAccountsPage {
+
+	protected UserAccountsSetPasswordPage(VitroRequest vreq) {
+		super(vreq);
+	}
+
+}

webapp/src/edu/cornell/mannlib/vitro/webapp/controller/edit/RefactorOperationController.java

@@ -21,6 +21,11 @@ import com.hp.hpl.jena.ontology.DatatypeProperty;
 import com.hp.hpl.jena.ontology.OntModel;
 import com.hp.hpl.jena.ontology.OntProperty;
 import com.hp.hpl.jena.ontology.OntResource;
+import com.hp.hpl.jena.query.Dataset;
+import com.hp.hpl.jena.query.QueryExecutionFactory;
+import com.hp.hpl.jena.query.QueryFactory;
+import com.hp.hpl.jena.query.QuerySolution;
+import com.hp.hpl.jena.query.ResultSet;
 import com.hp.hpl.jena.rdf.model.Literal;
 import com.hp.hpl.jena.rdf.model.Model;
 import com.hp.hpl.jena.rdf.model.ModelFactory;
@@ -45,7 +50,10 @@ import edu.cornell.mannlib.vitro.webapp.auth.requestedAction.Actions;
 import edu.cornell.mannlib.vitro.webapp.auth.requestedAction.usepages.EditOntology;
 import edu.cornell.mannlib.vitro.webapp.controller.Controllers;
 import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
+import edu.cornell.mannlib.vitro.webapp.dao.jena.ModelContext;
 import edu.cornell.mannlib.vitro.webapp.dao.jena.event.EditEvent;
+import edu.cornell.mannlib.vitro.webapp.servlet.setup.FileGraphSetup;
+import edu.cornell.mannlib.vitro.webapp.servlet.setup.JenaDataSourceSetupBase;
 
 public class RefactorOperationController extends BaseEditController {
 	
@@ -69,16 +77,6 @@ public class RefactorOperationController extends BaseEditController {
 		ontModel.enterCriticalSection(Lock.WRITE);
 		ArrayList<String> results = new ArrayList<String>();
 				
-		/* Debugging code thats inserts invalid triples into model
-		Property hasTitle = ontModel.getProperty("http://www.owl-ontologies.com/Ontology1209425965.owl#hasTitleee");
-		Resource product = ontModel.createResource("http://www.owl-ontologies.com/Ontology1209425965.owl#someBook14");
-		Resource product2 = ontModel.createResource("http://www.owl-ontologies.com/Ontology1209425965.owl#someBook15");
-		Literal illegalLiteral = ontModel.createTypedLiteral(134);
-		Literal illegalLiteral2 = ontModel.createTypedLiteral(234);
-		ontModel.add(product, hasTitle, illegalLiteral);
-		ontModel.add(product2, hasTitle, illegalLiteral2);
-		*/
-		
 		try
 		{
 			ExtendedIterator dataProperties = ontModel.listDatatypeProperties();
@@ -182,10 +180,8 @@ public class RefactorOperationController extends BaseEditController {
 	}
 	
 	private String doRenameResource(VitroRequest request, HttpServletResponse response, EditProcessObject epo) {
+		
 		String userURI = LoginStatusBean.getBean(request).getUserURI();
-		
-		OntModel ontModel = (OntModel) getServletContext().getAttribute("baseOntModel");
-		
 		String oldURIStr = (String) epo.getAttribute("oldURI");
 		String newURIStr = request.getParameter("newURI");
 			
@@ -214,39 +210,43 @@ public class RefactorOperationController extends BaseEditController {
             return "STOP";
 		}
 		
-		ontModel.enterCriticalSection(Lock.WRITE);
+		// find the models that the resource is referred to in and change
-		ontModel.getBaseModel().notifyEvent(new EditEvent(userURI,true));
+		// the name in each of those models.		
-		try {
+		String queryStr = "SELECT distinct ?graph WHERE {{ GRAPH ?graph { ?subj <" +  oldURIStr  + "> ?obj }} ";
-			Property prop = ontModel.getProperty(oldURIStr);
+		queryStr += " union { GRAPH ?graph { <" + oldURIStr + "> ?prop ?obj }} ";
-			if(prop != null)
+		queryStr += " union { GRAPH ?graph { ?subj ?prop <" +  oldURIStr  + ">}}}";
-			{
+		Dataset dataset = request.getDataset();
-				try {
+		
-					Property newProp = ontModel.createProperty(newURIStr);
+    	dataset.getLock().enterCriticalSection(Lock.READ);
-					StmtIterator statements = ontModel.listStatements(null, prop, (RDFNode)null);
+    	try {
-					try {
+    		ResultSet resultSet = QueryExecutionFactory.create(QueryFactory.create(queryStr), dataset).execSelect();
-						while(statements.hasNext()) {
+    		
-							Statement statement = (Statement)statements.next();
+    		while (resultSet.hasNext()) {
-							Resource subj = statement.getSubject();
+    			QuerySolution qs = resultSet.next();
-							RDFNode obj = statement.getObject();
+    			String graphURI = qs.get("graph").asNode().toString();
-							Statement newStatement = ontModel.createStatement(subj, newProp, obj);
+    			
-							ontModel.add(newStatement);
+    			if (graphURI.startsWith(FileGraphSetup.FILEGRAPH_URI_ROOT)) {
-						}
+    			   continue;	
-					} finally {
+    			}
-						if (statements != null) {
+    			
-							statements.close();
+    			boolean doNotify = false;
-						}
+    			Model model = null;
-					}
+    			
-					ontModel.remove(ontModel.listStatements(null, prop, (RDFNode)null));
+    			if (JenaDataSourceSetupBase.JENA_TBOX_ASSERTIONS_MODEL.equals(graphURI)) {
-				} catch (InvalidPropertyURIException ipue) {
+    				model = ModelContext.getBaseOntModelSelector(getServletContext()).getTBoxModel();
-					/* if it can't be a property, don't bother with predicates */ 
+    				doNotify = true;
-				}			
+    			} else if (JenaDataSourceSetupBase.JENA_DB_MODEL.equals(graphURI)) {
-				Resource res = ontModel.getResource(oldURIStr);
+					model = ModelContext.getBaseOntModelSelector(getServletContext()).getABoxModel();
-				ResourceUtils.renameResource(res,newURIStr);
+					doNotify = true;
-			}
+    			} else {
-		} finally {
+    			    model = dataset.getNamedModel(graphURI);
-			ontModel.getBaseModel().notifyEvent(new EditEvent(userURI,false));
+    		    }
-			ontModel.leaveCriticalSection();
+    			
-		}
+    			renameResourceInModel(model, userURI, oldURIStr, newURIStr, doNotify);
+    		}	
+    	} finally {
+    		dataset.getLock().leaveCriticalSection();
+    	}
 		
 		// there are no statements to delete, but we want indexes updated appropriately
 		request.getFullWebappDaoFactory().getIndividualDao().deleteIndividual(oldURIStr);
@@ -275,6 +275,50 @@ public class RefactorOperationController extends BaseEditController {
 		
 	}
 	
+	private void renameResourceInModel(Model model, String userURI, String oldURIStr, String newURIStr, boolean doNotify) {
+				
+		model.enterCriticalSection(Lock.WRITE);
+		
+		if (doNotify) {
+		   model.notifyEvent(new EditEvent(userURI,true));
+		}
+		
+		try {
+			Property prop = model.getProperty(oldURIStr); // this will create a resource if there isn't
+			                                              // one by this URI (we don't expect this to happen
+			                                              // and will also return a resource if the given
+			                                              // URI is the URI of a class.
+			try {
+				Property newProp = model.createProperty(newURIStr);
+				StmtIterator statements = model.listStatements(null, prop, (RDFNode)null);
+				try {
+					while(statements.hasNext()) {
+						Statement statement = (Statement)statements.next();
+						Resource subj = statement.getSubject();
+						RDFNode obj = statement.getObject();
+						Statement newStatement = model.createStatement(subj, newProp, obj);
+						model.add(newStatement);
+					}
+				} finally {
+					if (statements != null) {
+						statements.close();
+					}
+				}
+				model.remove(model.listStatements(null, prop, (RDFNode)null));
+			} catch (InvalidPropertyURIException ipue) {
+				/* if it can't be a property, don't bother with predicates */ 
+			}			
+			Resource res = model.getResource(oldURIStr);
+			ResourceUtils.renameResource(res,newURIStr);
+			
+		} finally {
+			if (doNotify) {
+			   model.notifyEvent(new EditEvent(userURI,false));
+			}
+			model.leaveCriticalSection();
+		}		
+	}
+	
 	private void doMovePropertyStatements(VitroRequest request, HttpServletResponse response, EditProcessObject epo) {
 		String userURI = LoginStatusBean.getBean(request).getUserURI();
 		

webapp/src/edu/cornell/mannlib/vitro/webapp/controller/freemarker/IndividualListController.java

@@ -125,7 +125,7 @@ public class IndividualListController extends FreemarkerHttpServlet {
                     body.put("subtitle", vclass.getName());
                 }
                 body.put("title", title);  
-                body.put("redirecturl", vreq.getContextPath()+"/entityurl/");
+                body.put("rdfUrl", vreq.getContextPath()+"/listrdf/");
                 getServletContext().setAttribute("classuri", vclass.getURI());
             }   
             

webapp/src/edu/cornell/mannlib/vitro/webapp/controller/freemarker/SolrIndividualListController.java

@@ -15,18 +15,12 @@ import javax.servlet.ServletException;
 import org.apache.commons.lang.StringUtils;
 import org.apache.commons.logging.Log;
 import org.apache.commons.logging.LogFactory;
-import org.apache.lucene.document.Document;
 import org.apache.lucene.index.CorruptIndexException;
-import org.apache.lucene.index.Term;
+import org.apache.solr.client.solrj.SolrQuery;
-import org.apache.lucene.search.BooleanClause;
+import org.apache.solr.client.solrj.SolrServer;
-import org.apache.lucene.search.BooleanQuery;
+import org.apache.solr.client.solrj.response.QueryResponse;
-import org.apache.lucene.search.IndexSearcher;
+import org.apache.solr.common.SolrDocument;
-import org.apache.lucene.search.PrefixQuery;
+import org.apache.solr.common.SolrDocumentList;
-import org.apache.lucene.search.Query;
-import org.apache.lucene.search.ScoreDoc;
-import org.apache.lucene.search.Sort;
-import org.apache.lucene.search.TermQuery;
-import org.apache.lucene.search.TopDocs;
 
 import edu.cornell.mannlib.vitro.webapp.beans.Individual;
 import edu.cornell.mannlib.vitro.webapp.beans.VClass;
@@ -36,8 +30,8 @@ import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.Exc
 import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
 import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
 import edu.cornell.mannlib.vitro.webapp.dao.IndividualDao;
-import edu.cornell.mannlib.vitro.webapp.search.lucene.Entity2LuceneDoc;
+import edu.cornell.mannlib.vitro.webapp.search.lucene.Entity2LuceneDoc.VitroLuceneTermNames;
-import edu.cornell.mannlib.vitro.webapp.search.lucene.LuceneIndexFactory;
+import edu.cornell.mannlib.vitro.webapp.search.solr.SolrSetup;
 import edu.cornell.mannlib.vitro.webapp.web.templatemodels.individual.ListedIndividualTemplateModel;
 import freemarker.ext.beans.BeansWrapper;
 import freemarker.template.TemplateModel;
@@ -62,7 +56,6 @@ public class SolrIndividualListController extends FreemarkerHttpServlet {
         String templateName = TEMPLATE_DEFAULT;
         Map<String, Object> body = new HashMap<String, Object>();
         String errorMessage = null;
-        String message = null;
         
         try {
             Object obj = vreq.getAttribute("vclass");
@@ -78,7 +71,7 @@ public class SolrIndividualListController extends FreemarkerHttpServlet {
                             errorMessage = "Class " + vitroClassIdStr + " not found";
                         }
                     } catch (Exception ex) {
-                        throw new HelpException("IndividualListController: request parameter 'vclassId' must be a URI string.");
+                        throw new HelpException("IndividualListController: url parameter 'vclassId' must be a URI string.");
                     }
                 }
             } else if (obj instanceof VClass) {
@@ -101,14 +94,16 @@ public class SolrIndividualListController extends FreemarkerHttpServlet {
                         getServletContext());                                
                 body.putAll(map);
 
+                @SuppressWarnings("unchecked")
                 List<Individual> inds = (List<Individual>)map.get("entities");
                 List<ListedIndividualTemplateModel> indsTm = new ArrayList<ListedIndividualTemplateModel>();
-                for(Individual ind : inds ){
+                for ( Individual ind : inds ) {
                     indsTm.add(new ListedIndividualTemplateModel(ind,vreq));
                 }
                 body.put("individuals", indsTm);
                 
                 List<TemplateModel> wpages = new ArrayList<TemplateModel>();
+                @SuppressWarnings("unchecked")
                 List<PageRecord> pages = (List<PageRecord>)body.get("pages");
                 BeansWrapper wrapper = new BeansWrapper();
                 for( PageRecord pr: pages ){
@@ -125,7 +120,7 @@ public class SolrIndividualListController extends FreemarkerHttpServlet {
                     body.put("subtitle", vclass.getName());
                 }
                 body.put("title", title);  
-                body.put("redirecturl", vreq.getContextPath()+"/entityurl/");
+                body.put("rdfUrl", vreq.getContextPath() + "/listrdf/" + vclass.getLocalName() + ".rdf");
                 getServletContext().setAttribute("classuri", vclass.getURI());
             }   
 
@@ -138,8 +133,6 @@ public class SolrIndividualListController extends FreemarkerHttpServlet {
         if (errorMessage != null) {
             templateName = Template.ERROR_MESSAGE.toString();
             body.put("errorMessage", errorMessage);
-        } else if (message != null) {
-            body.put("message", message);
         }
         
         return new TemplateResponseValues(templateName, body);
@@ -175,163 +168,148 @@ public class SolrIndividualListController extends FreemarkerHttpServlet {
      * This method is now called in a couple of places.  It should be refactored
      * into a DAO or similar object.
      */
-     public static Map<String,Object> getResultsForVClass(String vclassURI, int page, String alpha, IndividualDao indDao, ServletContext context) 
+    public static Map<String,Object> getResultsForVClass(String vclassURI, int page, String alpha, IndividualDao indDao, ServletContext context) 
-     throws CorruptIndexException, IOException, ServletException{
+    throws CorruptIndexException, IOException, ServletException {
-         Map<String,Object> rvMap = new HashMap<String,Object>();      
+        Map<String,Object> rvMap = new HashMap<String,Object>();      
 
-         //make lucene query for this rdf:type
+        // Make solr query for this rdf:type
-         Query query = getQuery(vclassURI, alpha);        
+        SolrQuery query = getQuery(vclassURI, alpha, page);         
+        SolrServer solr = SolrSetup.getSolrServer(context);
+        QueryResponse response = null;
         
-         //execute lucene query for individuals of the specified type
+        // Execute query for individuals of the specified type
-         IndexSearcher index = LuceneIndexFactory.getIndexSearcher(context);
+        try {
-         TopDocs docs = null;
+            response = solr.query(query);            
-         try{
+        } catch (Throwable t) {
-             docs = index.search(query, null, 
+            log.error(t, t);            
-                 ENTITY_LIST_CONTROLLER_MAX_RESULTS, 
-                 new Sort(Entity2LuceneDoc.term.NAME_LOWERCASE));
-         }catch(Throwable th){
-             log.error("Could not run search. " + th.getMessage());
-             docs = null;
-         }
-         
-         if( docs == null )            
-             throw new ServletException("Could not run search in IndividualListController");        
-         
-         //get list of individuals for the search results
-         int size = docs.totalHits;
-         log.debug("Number of search results: " + size);
-         
-         // don't get all the results, only get results for the requestedSize
-         List<Individual> individuals = new ArrayList<Individual>(INDIVIDUALS_PER_PAGE);
-         int individualsAdded = 0;
-         int ii = (page-1)*INDIVIDUALS_PER_PAGE;               
-         while( individualsAdded < INDIVIDUALS_PER_PAGE && ii < size ){
-             ScoreDoc hit = docs.scoreDocs[ii];
-             if (hit != null) {
-                 Document doc = index.doc(hit.doc);
-                 if (doc != null) {                                                                                        
-                     String uri = doc.getField(Entity2LuceneDoc.term.URI).stringValue();
-                     Individual ind = indDao.getIndividualByURI( uri );  
-                     if( ind != null ){
-                         individuals.add( ind );                         
-                         individualsAdded++;
-                     }
-                 } else {
-                     log.warn("no document found for lucene doc id " + hit.doc);
-                 }
-             } else {
-                 log.debug("hit was null");
-             }                         
-             ii++;            
-         }   
-         
-         rvMap.put("count", size);
-         
-         if( size > INDIVIDUALS_PER_PAGE ){
-             rvMap.put("showPages", Boolean.TRUE);
-             List<PageRecord> pageRecords = makePagesList(size, INDIVIDUALS_PER_PAGE, page);
-             rvMap.put("pages", pageRecords);                    
-         }else{
-             rvMap.put("showPages", Boolean.FALSE);
-             rvMap.put("pages", Collections.emptyList());
-         }
-                         
-         rvMap.put("alpha",alpha);
-         
-         rvMap.put("totalCount", size);
-         rvMap.put("entities",individuals);
-         if (individuals == null) 
-             log.debug("entities list is null for vclass " + vclassURI );                        
-         
-         return rvMap;
-     }
-     
-     private static BooleanQuery getQuery(String vclassUri,  String alpha){
-         BooleanQuery query = new BooleanQuery();
-         try{      
-            //query term for rdf:type
-            query.add(
-                    new TermQuery( new Term(Entity2LuceneDoc.term.RDFTYPE, vclassUri)),
-                    BooleanClause.Occur.MUST );                          
-                                       
-            //Add alpha filter if it is needed
-            Query alphaQuery = null;
-            if( alpha != null && !"".equals(alpha) && alpha.length() == 1){      
-                alphaQuery =    
-                    new PrefixQuery(new Term(Entity2LuceneDoc.term.NAME_LOWERCASE, alpha.toLowerCase()));
-                query.add(alphaQuery,BooleanClause.Occur.MUST);
-            }                      
-                            
-            log.debug("Query: " + query);
-            return query;
-        } catch (Exception ex){
-            log.error(ex,ex);
-            return new BooleanQuery();        
         }
-     }    
 
-     public static List<PageRecord> makePagesList( int count, int pageSize,  int selectedPage){        
+        if ( response == null ) {         
+            throw new ServletException("Could not run search in IndividualListController");        
+        }
 
-         List<PageRecord> records = new ArrayList<PageRecord>( MAX_PAGES + 1 );
+        SolrDocumentList docs = response.getResults();
-         int requiredPages = count/pageSize ;
-         int remainder = count % pageSize ; 
-         if( remainder > 0 )
-             requiredPages++;
         
-         if( selectedPage < MAX_PAGES && requiredPages > MAX_PAGES ){
+        if (docs == null) {
-             //the selected pages is within the first maxPages, just show the normal pages up to maxPages.
+            throw new ServletException("Could not run search in IndividualListController");    
-             for(int page = 1; page < requiredPages && page <= MAX_PAGES ; page++ ){
+        }
-                 records.add( new PageRecord( "page=" + page, Integer.toString(page), Integer.toString(page), selectedPage == page ) );            
+
+        // get list of individuals for the search results
+        long size = docs.getNumFound();
+        log.debug("Number of search results: " + size);
+
+        List<Individual> individuals = new ArrayList<Individual>(); 
+        for (SolrDocument doc : docs) {
+            String uri = doc.get(VitroLuceneTermNames.URI).toString();
+            Individual individual = indDao.getIndividualByURI( uri ); 
+            if (individual != null) {
+                individuals.add(individual);
+            }
+        }
+        
+        rvMap.put("count", size);
+         
+        if( size > INDIVIDUALS_PER_PAGE ){
+            rvMap.put("showPages", Boolean.TRUE);
+            List<PageRecord> pageRecords = makePagesList(size, INDIVIDUALS_PER_PAGE, page);
+            rvMap.put("pages", pageRecords);                    
+        }else{
+            rvMap.put("showPages", Boolean.FALSE);
+            rvMap.put("pages", Collections.emptyList());
+        }
+                         
+        rvMap.put("alpha",alpha);
+
+        rvMap.put("totalCount", size);
+        rvMap.put("entities",individuals);
+        
+        if (individuals.isEmpty()) 
+            log.debug("entities list is empty for vclass " + vclassURI );                        
+         
+        return rvMap;
+    }
+     
+    private static SolrQuery getQuery(String vclassUri, String alpha, int page){
+
+        String queryStr = VitroLuceneTermNames.RDFTYPE + ":\"" + vclassUri + "\"";
+            
+        // Add alpha filter if it is needed
+        if ( alpha != null && !"".equals(alpha) && alpha.length() == 1) {      
+            queryStr += VitroLuceneTermNames.NAME_LOWERCASE + ":" + alpha.toLowerCase() + "*";
+        }     
+        
+        SolrQuery query = new SolrQuery(queryStr);
+
+        int start = (page-1)*INDIVIDUALS_PER_PAGE;
+        query.setStart(start)
+             .setRows(INDIVIDUALS_PER_PAGE)
+             .setSortField(VitroLuceneTermNames.NAME_LOWERCASE_SINGLE_VALUED, SolrQuery.ORDER.asc);
+        
+        log.debug("Query: " + query);
+        return query;  
+    }    
+
+    public static List<PageRecord> makePagesList( long size, int pageSize,  int selectedPage ) {        
+
+        List<PageRecord> records = new ArrayList<PageRecord>( MAX_PAGES + 1 );
+        int requiredPages = (int) (size/pageSize) ;
+        int remainder = (int) (size % pageSize) ; 
+        if( remainder > 0 )
+            requiredPages++;
+         
+        if( selectedPage < MAX_PAGES && requiredPages > MAX_PAGES ){
+            //the selected pages is within the first maxPages, just show the normal pages up to maxPages.
+            for(int page = 1; page < requiredPages && page <= MAX_PAGES ; page++ ){
+                records.add( new PageRecord( "page=" + page, Integer.toString(page), Integer.toString(page), selectedPage == page ) );            
+            }
+            records.add( new PageRecord( "page="+ (MAX_PAGES+1), Integer.toString(MAX_PAGES+1), "more...", false));
+        }else if( requiredPages > MAX_PAGES && selectedPage+1 > MAX_PAGES && selectedPage < requiredPages - MAX_PAGES){
+            //the selected pages is in the middle of the list of page
+            int startPage = selectedPage - MAX_PAGES / 2;
+            int endPage = selectedPage + MAX_PAGES / 2;            
+            for(int page = startPage; page <= endPage ; page++ ){
+                records.add( new PageRecord( "page=" + page, Integer.toString(page), Integer.toString(page), selectedPage == page ) );            
+            }
+            records.add( new PageRecord( "page="+ endPage+1, Integer.toString(endPage+1), "more...", false));
+        }else if ( requiredPages > MAX_PAGES && selectedPage > requiredPages - MAX_PAGES ){
+            //the selected page is in the end of the list 
+            int startPage = requiredPages - MAX_PAGES;      
+            double max = Math.ceil(size/pageSize);
+            for(int page = startPage; page <= max; page++ ){
+                records.add( new PageRecord( "page=" + page, Integer.toString(page), Integer.toString(page), selectedPage == page ) );            
+            }          
+        }else{
+            //there are fewer than maxPages pages.            
+            for(int i = 1; i <= requiredPages; i++ ){
+                records.add( new PageRecord( "page=" + i, Integer.toString(i), Integer.toString(i), selectedPage == i ) );            
              }    
-             records.add( new PageRecord( "page="+ (MAX_PAGES+1), Integer.toString(MAX_PAGES+1), "more...", false));
+        }                
-         }else if( requiredPages > MAX_PAGES && selectedPage+1 > MAX_PAGES && selectedPage < requiredPages - MAX_PAGES){
+        return records;
-             //the selected pages is in the middle of the list of page
+    }
-             int startPage = selectedPage - MAX_PAGES / 2;
-             int endPage = selectedPage + MAX_PAGES / 2;            
-             for(int page = startPage; page <= endPage ; page++ ){
-                 records.add( new PageRecord( "page=" + page, Integer.toString(page), Integer.toString(page), selectedPage == page ) );            
-             }
-             records.add( new PageRecord( "page="+ endPage+1, Integer.toString(endPage+1), "more...", false));
-         }else if ( requiredPages > MAX_PAGES && selectedPage > requiredPages - MAX_PAGES ){
-             //the selected page is in the end of the list 
-             int startPage = requiredPages - MAX_PAGES;      
-             double max = Math.ceil(count/pageSize);
-             for(int page = startPage; page <= max; page++ ){
-                 records.add( new PageRecord( "page=" + page, Integer.toString(page), Integer.toString(page), selectedPage == page ) );            
-             }          
-         }else{
-             //there are fewer than maxPages pages.            
-             for(int i = 1; i <= requiredPages; i++ ){
-                 records.add( new PageRecord( "page=" + i, Integer.toString(i), Integer.toString(i), selectedPage == i ) );            
-             }    
-         }                
-         return records;
-     }
 
-     public static class PageRecord  {
+    public static class PageRecord  {
-         public PageRecord(String param, String index, String text, boolean selected) {            
+        public PageRecord(String param, String index, String text, boolean selected) {            
-             this.param = param;
+            this.param = param;
-             this.index = index;
+            this.index = index;
-             this.text = text;
+            this.text = text;
-             this.selected = selected;
+            this.selected = selected;
-         }
+        }
-         public String param;
+        public String param;
-         public String index;
+        public String index;
-         public String text;        
+        public String text;        
-         public boolean selected=false;
+        public boolean selected=false;
-         
-         public String getParam() {
-             return param;
-         }
-         public String getIndex() {
-             return index;
-         }
-         public String getText() {
-             return text;
-         }
-         public boolean getSelected(){
-             return selected;
-         }
-     }
 
+        public String getParam() {
+            return param;
+        }
+        public String getIndex() {
+            return index;
+        }
+        public String getText() {
+            return text;
+        }
+        public boolean getSelected(){
+            return selected;
+        }
+    }
 }

webapp/src/edu/cornell/mannlib/vitro/webapp/search/controller/SolrAutocompleteController.java

@@ -114,7 +114,6 @@ public class SolrAutocompleteController extends VitroAjaxController {
                 }
             }   
 
-            // Since SolrQuery.setSortField() is buggy, sort the results here
             Collections.sort(results);
             
             // map.put("results", results);
@@ -157,8 +156,9 @@ public class SolrAutocompleteController extends VitroAjaxController {
         }   
         
         query.setFields(VitroLuceneTermNames.NAME_RAW, VitroLuceneTermNames.URI); // fields to retrieve
-             // Solr bug: generates sort=nameLowercase asc instead of sort=nameLowercase+asc
+       
-             //.setSortField(VitroLuceneTermNames.NAME_LOWERCASE, SolrQuery.ORDER.asc);
+        // Can't sort on multivalued field, so sort results in Java when we get them
+        // query.setSortField(VitroLuceneTermNames.NAME_LOWERCASE, SolrQuery.ORDER.asc);
         
         return query;
     }
@@ -187,6 +187,7 @@ public class SolrAutocompleteController extends VitroAjaxController {
         // RY 5/18/2011 For now, just doing untokenized query, due to the interactions of wildcard
         // query and stemming described below. Need to find a way to do this in Solr.
         // Should take the same approach if we can figure out how to do a disjunction.
+        // Probably just add an explicit "OR" between the terms.
  
 //        String stemParam = (String) request.getParameter("stem"); 
 //        boolean stem = "true".equals(stemParam);

webapp/src/edu/cornell/mannlib/vitro/webapp/search/controller/SolrPagedSearchController.java

@@ -175,10 +175,6 @@ public class SolrPagedSearchController extends FreemarkerHttpServlet {
             log.debug("Query text is \""+ qtxt + "\""); 
 
             SolrQuery query = getQuery(qtxt, maxHitCount, vreq);            
-
-            // ** For xml requested, add version=2.2 for xml version 
-            // is that enough, or do we also have to add wt param?
-            
             SolrServer solr = SolrSetup.getSolrServer(getServletContext());
             QueryResponse response = null;
             

webapp/src/edu/cornell/mannlib/vitro/webapp/search/lucene/Entity2LuceneDoc.java

@@ -86,6 +86,10 @@ public class Entity2LuceneDoc  implements Obj2DocIface{
         /** rdfs:label lowercased, no tokenizing, no stop words, no stemming **/
         public static String NAME_LOWERCASE = "nameLowercase"; // was NAMELOWERCASE
         
+        /** Same as NAME_LOWERCASE, but single-valued so it's sortable. **/
+        // RY Need to control how indexing selects which of multiple values to copy. 
+        public static String NAME_LOWERCASE_SINGLE_VALUED = "nameLowercaseSingleValued";
+        
         /** rdfs:label lowercased, tokenized, stop words, no stemming.
          *  Used for autocomplete matching on proper names. **/
         public static String AC_NAME_UNSTEMMED = "acNameUnstemmed"; // was NAMEUNSTEMMED        

webapp/src/edu/cornell/mannlib/vitro/webapp/servlet/setup/FileGraphSetup.java

@@ -32,10 +32,10 @@ import edu.cornell.mannlib.vitro.webapp.dao.jena.OntModelSelectorImpl;
 
 public class FileGraphSetup implements ServletContextListener {
 
-	private static String ABOX = "abox";
+	private static final String ABOX = "abox";
-	private static String TBOX = "tbox";
+	private static final String TBOX = "tbox";
-	private static String PATH_ROOT = "/WEB-INF/filegraph/";
+	private static final String PATH_ROOT = "/WEB-INF/filegraph/";
-	private static String URI_ROOT = "http://vitro.mannlib.cornell.edu/filegraph/";
+	public static final String FILEGRAPH_URI_ROOT = "http://vitro.mannlib.cornell.edu/filegraph/";
 	
 	private static final Log log = LogFactory.getLog(FileGraphSetup.class);
 		
@@ -189,7 +189,7 @@ public class FileGraphSetup implements ServletContextListener {
 	 */
 	public void cleanupDB(Store kbStore, Set<String> uriSet, String type) {
 		
-		Pattern graphURIPat = Pattern.compile("^" + URI_ROOT + type);   
+		Pattern graphURIPat = Pattern.compile("^" + FILEGRAPH_URI_ROOT + type);   
 		 
 	    Iterator<Node> iter = StoreUtils.storeGraphNames(kbStore);	
 	    
@@ -237,7 +237,7 @@ public class FileGraphSetup implements ServletContextListener {
 		
 	    if (path != null) {
 	    	File file = new File(path);
-			uri = URI_ROOT + type + "/" + file.getName(); 
+			uri = FILEGRAPH_URI_ROOT + type + "/" + file.getName(); 
 	    }
 		
 		return uri;

webapp/src/edu/cornell/mannlib/vitro/webapp/servlet/setup/JenaDataSourceSetupSDB.java

@@ -80,6 +80,7 @@ public class JenaDataSourceSetupSDB extends JenaDataSourceSetupBase implements j
             
             //memModel.writeAll(System.out,"N3",null);
             
+            /* commenting out during development of 1.3 - this will be redone.
             if ( updateRequired(ctx, memModel)) {
             	log.error(getMigrationErrString());
             	System.out.println(getMigrationErrString());
@@ -88,6 +89,7 @@ public class JenaDataSourceSetupSDB extends JenaDataSourceSetupBase implements j
             	AbortStartup.abortStartup(ctx);
             	throw new MigrationRequiredError(getMigrationErrString());
             }
+            */
             
             if (memModel == null) {
                 memModel = ModelFactory.createOntologyModel(MEM_ONT_MODEL_SPEC);

webapp/web/templates/freemarker/body/individualList.ftl

@@ -7,7 +7,7 @@
 ${stylesheets.add('<link rel="stylesheet" href="${urls.base}/css/browseIndex.css" />')}
 
 <section class="individualList">
-   <h2>${title} <span class="rdfLink"><a class="icon-rdf" href="${redirecturl}" title="View the ${title} list in RDF format">RDF</a></span></h2>
+   <h2>${title} <span class="rdfLink"><a class="icon-rdf" href="${rdfUrl}" title="View the ${title} list in RDF format">RDF</a></span></h2>
     <#if subtitle??>
         <h4>${subtitle}</h4>
     </#if>