incremental development for NIHVIVO-2426 (data migration)
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parent
e2afb2aee6
commit
d659a0acef
2 changed files with 1 additions and 7 deletions
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@ -321,9 +321,6 @@ public void updateAnnotationModel() throws IOException {
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// for each ClassGroup in the old vitro annotations model: if it is not in
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// for each ClassGroup in the old vitro annotations model: if it is not in
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// the new vitro annotations model and the site has no classes asserted to
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// the new vitro annotations model and the site has no classes asserted to
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// be in that class group then delete it.
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// be in that class group then delete it.
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// TODO: the site will have classes asserted to be in it if we have switched
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// the default assignment in the new version but haven't migration yet. How
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// to handle this?
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removeObsoleteAnnotations();
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removeObsoleteAnnotations();
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@ -57,7 +57,6 @@ public class UpdateKnowledgeBase implements ServletContextListener {
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private static final String REMOVED_DATA_FILE = DATA_DIR + CHANGED_DATA_DIR + "removedData.n3";
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private static final String REMOVED_DATA_FILE = DATA_DIR + CHANGED_DATA_DIR + "removedData.n3";
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private static final String ADDED_DATA_FILE = DATA_DIR + CHANGED_DATA_DIR + "addedData.n3";
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private static final String ADDED_DATA_FILE = DATA_DIR + CHANGED_DATA_DIR + "addedData.n3";
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private static final String SPARQL_CONSTRUCT_ADDITIONS_DIR = DATA_DIR + "sparqlConstructs/additions/";
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private static final String SPARQL_CONSTRUCT_ADDITIONS_DIR = DATA_DIR + "sparqlConstructs/additions/";
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private static final String SPARQL_CONSTRUCT_ADDITIONS_PASS2_DIR = DATA_DIR + "sparqlConstructs/additions-pass2/";
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private static final String SPARQL_CONSTRUCT_DELETIONS_DIR = DATA_DIR + "sparqlConstructs/deletions/";
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private static final String SPARQL_CONSTRUCT_DELETIONS_DIR = DATA_DIR + "sparqlConstructs/deletions/";
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private static final String MISC_REPLACEMENTS_FILE = DATA_DIR + "miscReplacements.rdf";
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private static final String MISC_REPLACEMENTS_FILE = DATA_DIR + "miscReplacements.rdf";
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private static final String OLD_TBOX_MODEL_DIR = DATA_DIR + "oldVersion/";
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private static final String OLD_TBOX_MODEL_DIR = DATA_DIR + "oldVersion/";
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@ -83,7 +82,6 @@ public class UpdateKnowledgeBase implements ServletContextListener {
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settings.setAskEmptyQueryFile(getAskEmptyQueryPath(ctx));
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settings.setAskEmptyQueryFile(getAskEmptyQueryPath(ctx));
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settings.setDataDir(ctx.getRealPath(DATA_DIR));
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settings.setDataDir(ctx.getRealPath(DATA_DIR));
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settings.setSparqlConstructAdditionsDir(ctx.getRealPath(SPARQL_CONSTRUCT_ADDITIONS_DIR));
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settings.setSparqlConstructAdditionsDir(ctx.getRealPath(SPARQL_CONSTRUCT_ADDITIONS_DIR));
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settings.setSparqlConstructAdditionsPass2Dir(ctx.getRealPath(SPARQL_CONSTRUCT_ADDITIONS_PASS2_DIR));
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settings.setSparqlConstructDeletionsDir(ctx.getRealPath(SPARQL_CONSTRUCT_DELETIONS_DIR));
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settings.setSparqlConstructDeletionsDir(ctx.getRealPath(SPARQL_CONSTRUCT_DELETIONS_DIR));
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settings.setDiffFile(ctx.getRealPath(DIFF_FILE));
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settings.setDiffFile(ctx.getRealPath(DIFF_FILE));
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settings.setSuccessAssertionsFile(ctx.getRealPath(SUCCESS_ASSERTIONS_FILE));
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settings.setSuccessAssertionsFile(ctx.getRealPath(SUCCESS_ASSERTIONS_FILE));
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@ -118,7 +116,7 @@ public class UpdateKnowledgeBase implements ServletContextListener {
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try {
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try {
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if (ontologyUpdater.updateRequired()) {
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if (ontologyUpdater.updateRequired()) {
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ctx.setAttribute(LuceneSetup.INDEX_REBUILD_REQUESTED_AT_STARTUP, Boolean.TRUE);
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ctx.setAttribute(LuceneSetup.INDEX_REBUILD_REQUESTED_AT_STARTUP, Boolean.TRUE);
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doMiscAppMetadataReplacements(ctx.getRealPath(MISC_REPLACEMENTS_FILE), oms);
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//doMiscAppMetadataReplacements(ctx.getRealPath(MISC_REPLACEMENTS_FILE), oms);
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reloadDisplayModel(ctx);
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reloadDisplayModel(ctx);
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}
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}
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} catch (Throwable t){
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} catch (Throwable t){
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@ -140,7 +138,6 @@ public class UpdateKnowledgeBase implements ServletContextListener {
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} catch (Throwable t) {
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} catch (Throwable t) {
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t.printStackTrace();
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t.printStackTrace();
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}
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}
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}
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}
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/**
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/**
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