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NIHVIVO-3712 removed OntClass conversions from smarterListHierarchyRootClasses

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brianjlowe 2012-06-15 15:04:00 +00:00
parent 909c2adeee
commit e0b8d9fa08
1 changed files with 24 additions and 25 deletions
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49
webapp/src/edu/cornell/mannlib/vitro/webapp/dao/jena/VClassDaoJena.java
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@ -40,6 +40,7 @@ import com.hp.hpl.jena.rdf.model.Literal;
import com.hp.hpl.jena.rdf.model.Model;
import com.hp.hpl.jena.rdf.model.Property;
import com.hp.hpl.jena.rdf.model.RDFNode;
import com.hp.hpl.jena.rdf.model.ResIterator;
import com.hp.hpl.jena.rdf.model.Resource;
import com.hp.hpl.jena.rdf.model.ResourceFactory;
import com.hp.hpl.jena.rdf.model.Statement;
@ -488,37 +489,35 @@ public class VClassDaoJena extends JenaBaseDao implements VClassDao {
*/
private Iterator<OntClass> smarterListHierarchyRootClasses(OntModel ontModel, String ontologyURI) {
List<OntClass> rootClassList = new ArrayList<OntClass>();
ClosableIterator<Individual> ci = ontModel.listIndividuals(OWL.Class);
ResIterator ci = ontModel.listResourcesWithProperty(RDF.type, OWL.Class);
try {
for (ClosableIterator<Individual> i = ci ; i.hasNext(); ) {
for (ResIterator i = ci ; i.hasNext(); ) {
try {
Individual classInd = i.next();
// if (!classInd.canAs(OntClass.class)) {
// continue;
// }
OntClass ontClass = (OntClass) classInd.as(OntClass.class);
Resource ontClass = i.nextResource();
boolean isRoot = true;
for (Iterator<RDFNode> j = ontClass.listPropertyValues(RDFS.subClassOf); j.hasNext(); ) {
Resource res = (Resource) j.next();
if (res.canAs(OntClass.class)) {
OntClass superClass = (OntClass) res.as(OntClass.class);
if (!superClass.isAnon() &&
((ontologyURI==null) || (ontologyURI.equals(superClass.getNameSpace()))) &&
!OWL.Thing.equals(superClass) &&
!superClass.equals(ontClass) &&
!( ontModel.contains(ontClass,OWL.equivalentClass,superClass) ||
ontModel.contains(superClass,OWL.equivalentClass,ontClass) ) ) {
if ( (superClass.getNameSpace() != null)
&& (!(NONUSER_NAMESPACES.contains(
superClass.getNameSpace()))) ) {
isRoot=false;
break;
}
for (StmtIterator j = ontClass.listProperties(RDFS.subClassOf); j.hasNext(); ) {
Statement stmt = j.nextStatement();
if (!stmt.getObject().isResource()) {
continue;
}
Resource superClass = (Resource) stmt.getObject();
if (!superClass.isAnon() &&
((ontologyURI==null) || (ontologyURI.equals(superClass.getNameSpace()))) &&
!OWL.Thing.equals(superClass) &&
!superClass.equals(ontClass) &&
!( ontModel.contains(ontClass,OWL.equivalentClass,superClass) ||
ontModel.contains(superClass,OWL.equivalentClass,ontClass) ) ) {
if ( (superClass.getNameSpace() != null)
&& (!(NONUSER_NAMESPACES.contains(
superClass.getNameSpace()))) ) {
isRoot=false;
break;
}
}
}
if (isRoot) {
rootClassList.add(ontClass);
if (isRoot && ontClass.canAs(OntClass.class)) {
rootClassList.add(ontClass.as(OntClass.class));
}
} catch (ClassCastException cce) {
log.error(cce, cce);