1. Modified the content header for the graphML file so that it streams instead of downloading it to the user's machine as a file attachment. This is required because thats how the flash expects the input file to be.

2. Added Asik's first draft of the co-authorship visuazlization files. 
3. Integrated the front end with the back end.

webapp/web/js/visualization/coauthorship/AC_OETags.js

@@ -0,0 +1,292 @@
+// Flash Player Version Detection - Rev 1.6
+// Detect Client Browser type
+// Copyright(c) 2005-2006 Adobe Macromedia Software, LLC. All rights reserved.
+var isIE  = (navigator.appVersion.indexOf("MSIE") != -1) ? true : false;
+var isWin = (navigator.appVersion.toLowerCase().indexOf("win") != -1) ? true : false;
+var isOpera = (navigator.userAgent.indexOf("Opera") != -1) ? true : false;
+
+function ControlVersion()
+{
+	var version;
+	var axo;
+	var e;
+
+	// NOTE : new ActiveXObject(strFoo) throws an exception if strFoo isn't in the registry
+
+	try {
+		// version will be set for 7.X or greater players
+		axo = new ActiveXObject("ShockwaveFlash.ShockwaveFlash.7");
+		version = axo.GetVariable("$version");
+	} catch (e) {
+	}
+
+	if (!version)
+	{
+		try {
+			// version will be set for 6.X players only
+			axo = new ActiveXObject("ShockwaveFlash.ShockwaveFlash.6");
+			
+			// installed player is some revision of 6.0
+			// GetVariable("$version") crashes for versions 6.0.22 through 6.0.29,
+			// so we have to be careful. 
+			
+			// default to the first public version
+			version = "WIN 6,0,21,0";
+
+			// throws if AllowScripAccess does not exist (introduced in 6.0r47)		
+			axo.AllowScriptAccess = "always";
+
+			// safe to call for 6.0r47 or greater
+			version = axo.GetVariable("$version");
+
+		} catch (e) {
+		}
+	}
+
+	if (!version)
+	{
+		try {
+			// version will be set for 4.X or 5.X player
+			axo = new ActiveXObject("ShockwaveFlash.ShockwaveFlash.3");
+			version = axo.GetVariable("$version");
+		} catch (e) {
+		}
+	}
+
+	if (!version)
+	{
+		try {
+			// version will be set for 3.X player
+			axo = new ActiveXObject("ShockwaveFlash.ShockwaveFlash.3");
+			version = "WIN 3,0,18,0";
+		} catch (e) {
+		}
+	}
+
+	if (!version)
+	{
+		try {
+			// version will be set for 2.X player
+			axo = new ActiveXObject("ShockwaveFlash.ShockwaveFlash");
+			version = "WIN 2,0,0,11";
+		} catch (e) {
+			version = -1;
+		}
+	}
+	
+	return version;
+}
+
+// JavaScript helper required to detect Flash Player PlugIn version information
+function GetSwfVer(){
+	// NS/Opera version >= 3 check for Flash plugin in plugin array
+	var flashVer = -1;
+	
+	if (navigator.plugins != null && navigator.plugins.length > 0) {
+		if (navigator.plugins["Shockwave Flash 2.0"] || navigator.plugins["Shockwave Flash"]) {
+			var swVer2 = navigator.plugins["Shockwave Flash 2.0"] ? " 2.0" : "";
+			var flashDescription = navigator.plugins["Shockwave Flash" + swVer2].description;
+			var descArray = flashDescription.split(" ");
+			var tempArrayMajor = descArray[2].split(".");			
+			var versionMajor = tempArrayMajor[0];
+			var versionMinor = tempArrayMajor[1];
+			var versionRevision = descArray[3];
+			if (versionRevision == "") {
+				versionRevision = descArray[4];
+			}
+			if (versionRevision[0] == "d") {
+				versionRevision = versionRevision.substring(1);
+			} else if (versionRevision[0] == "r") {
+				versionRevision = versionRevision.substring(1);
+				if (versionRevision.indexOf("d") > 0) {
+					versionRevision = versionRevision.substring(0, versionRevision.indexOf("d"));
+				}
+			} else if (versionRevision[0] == "b") {
+				versionRevision = versionRevision.substring(1);
+			}
+			var flashVer = versionMajor + "." + versionMinor + "." + versionRevision;
+		}
+	}
+	// MSN/WebTV 2.6 supports Flash 4
+	else if (navigator.userAgent.toLowerCase().indexOf("webtv/2.6") != -1) flashVer = 4;
+	// WebTV 2.5 supports Flash 3
+	else if (navigator.userAgent.toLowerCase().indexOf("webtv/2.5") != -1) flashVer = 3;
+	// older WebTV supports Flash 2
+	else if (navigator.userAgent.toLowerCase().indexOf("webtv") != -1) flashVer = 2;
+	else if ( isIE && isWin && !isOpera ) {
+		flashVer = ControlVersion();
+	}
+	return flashVer;
+}
+
+// When called with reqMajorVer, reqMinorVer, reqRevision returns true if that version or greater is available
+function DetectFlashVer(reqMajorVer, reqMinorVer, reqRevision)
+{
+	versionStr = GetSwfVer();
+	if (versionStr == -1 ) {
+		return false;
+	} else if (versionStr != 0) {
+		if(isIE && isWin && !isOpera) {
+			// Given "WIN 2,0,0,11"
+			tempArray         = versionStr.split(" "); 	// ["WIN", "2,0,0,11"]
+			tempString        = tempArray[1];			// "2,0,0,11"
+			versionArray      = tempString.split(",");	// ['2', '0', '0', '11']
+		} else {
+			versionArray      = versionStr.split(".");
+		}
+		var versionMajor      = versionArray[0];
+		var versionMinor      = versionArray[1];
+		var versionRevision   = versionArray[2];
+
+        	// is the major.revision >= requested major.revision AND the minor version >= requested minor
+		if (versionMajor > parseFloat(reqMajorVer)) {
+			return true;
+		} else if (versionMajor == parseFloat(reqMajorVer)) {
+			if (versionMinor > parseFloat(reqMinorVer))
+				return true;
+			else if (versionMinor == parseFloat(reqMinorVer)) {
+				if (versionRevision >= parseFloat(reqRevision))
+					return true;
+			}
+		}
+		return false;
+	}
+}
+
+function AC_AddExtension(src, ext)
+{
+  var qIndex = src.indexOf('?');
+  if ( qIndex != -1)
+  {
+    // Add the extention (if needed) before the query params
+    var path = src.substring(0, qIndex);
+    if (path.length >= ext.length && path.lastIndexOf(ext) == (path.length - ext.length))
+      return src;
+    else
+      return src.replace(/\?/, ext+'?'); 
+  }
+  else
+  {
+    // Add the extension (if needed) to the end of the URL
+    if (src.length >= ext.length && src.lastIndexOf(ext) == (src.length - ext.length))
+      return src;  // Already have extension
+    else
+      return src + ext;
+  }
+}
+
+function AC_Generateobj(objAttrs, params, embedAttrs) 
+{ 
+    var str = '';
+    if (isIE && isWin && !isOpera)
+    {
+  		str += '<object ';
+  		for (var i in objAttrs)
+  			str += i + '="' + objAttrs[i] + '" ';
+  		str += '>';
+  		for (var i in params)
+  			str += '<param name="' + i + '" value="' + params[i] + '" /> ';
+  		str += '</object>';
+    } else {
+  		str += '<embed ';
+  		for (var i in embedAttrs)
+  			str += i + '="' + embedAttrs[i] + '" ';
+  		str += '> </embed>';
+    }
+
+    document.write(str);
+}
+
+function AC_FL_RunContent(){
+  var ret = 
+    AC_GetArgs
+    (  arguments, ".swf", "movie", "clsid:d27cdb6e-ae6d-11cf-96b8-444553540000"
+     , "application/x-shockwave-flash"
+    );
+  AC_Generateobj(ret.objAttrs, ret.params, ret.embedAttrs);
+}
+
+function AC_GetArgs(args, ext, srcParamName, classid, mimeType){
+  var ret = new Object();
+  ret.embedAttrs = new Object();
+  ret.params = new Object();
+  ret.objAttrs = new Object();
+  for (var i=0; i < args.length; i=i+2){
+    var currArg = args[i].toLowerCase();    
+
+    switch (currArg){	
+      case "classid":
+        break;
+      case "pluginspage":
+        ret.embedAttrs[args[i]] = args[i+1];
+        break;
+      case "src":
+      case "movie":	
+        args[i+1] = AC_AddExtension(args[i+1], ext);
+        ret.embedAttrs["src"] = args[i+1];
+        ret.params[srcParamName] = args[i+1];
+        break;
+      case "onafterupdate":
+      case "onbeforeupdate":
+      case "onblur":
+      case "oncellchange":
+      case "onclick":
+      case "ondblClick":
+      case "ondrag":
+      case "ondragend":
+      case "ondragenter":
+      case "ondragleave":
+      case "ondragover":
+      case "ondrop":
+      case "onfinish":
+      case "onfocus":
+      case "onhelp":
+      case "onmousedown":
+      case "onmouseup":
+      case "onmouseover":
+      case "onmousemove":
+      case "onmouseout":
+      case "onkeypress":
+      case "onkeydown":
+      case "onkeyup":
+      case "onload":
+      case "onlosecapture":
+      case "onpropertychange":
+      case "onreadystatechange":
+      case "onrowsdelete":
+      case "onrowenter":
+      case "onrowexit":
+      case "onrowsinserted":
+      case "onstart":
+      case "onscroll":
+      case "onbeforeeditfocus":
+      case "onactivate":
+      case "onbeforedeactivate":
+      case "ondeactivate":
+      case "type":
+      case "codebase":
+        ret.objAttrs[args[i]] = args[i+1];
+        break;
+      case "id":
+      case "width":
+      case "height":
+      case "align":
+      case "vspace": 
+      case "hspace":
+      case "class":
+      case "title":
+      case "accesskey":
+      case "name":
+      case "tabindex":
+        ret.embedAttrs[args[i]] = ret.objAttrs[args[i]] = args[i+1];
+        break;
+      default:
+        ret.embedAttrs[args[i]] = ret.params[args[i]] = args[i+1];
+    }
+  }
+  ret.objAttrs["classid"] = classid;
+  if (mimeType) ret.embedAttrs["type"] = mimeType;
+  return ret;
+}
+
+

webapp/web/templates/visualization/co_authorship.jsp

@@ -0,0 +1,171 @@
+<%@ taglib uri="http://java.sun.com/jstl/core" prefix="c" %>
+<%@ taglib uri="http://java.sun.com/jsp/jstl/functions" prefix="fn"%>
+
+<c:set var="portalBean" value="${requestScope.portalBean}"/>
+<c:set var="themeDir"><c:out value="${portalBean.themeDir}" /></c:set>
+
+<c:url var="egoCoAuthorshipDataURL" value="/admin/visQuery">
+	<c:param name="vis" value="coauthorship"/>
+	<c:param name="render_mode" value="data"/>
+	<c:param name="uri" value="${requestScope.egoURIParam}"/>
+	<c:param name="labelField" value="name"/>
+</c:url>
+
+<c:url var="jquery" value="/js/jquery.js"/>
+<c:url var="adobeFlashDetector" value="/js/visualization/coauthorship/AC_OETags.js"/>
+<c:url var="style" value="/${themeDir}css/visualization/coauthorship/style.css"/>
+<c:url var="noImage" value="/${themeDir}site_icons/visualization/coauthorship/no_image.png"/>
+<c:url var="swfLink" value="/${themeDir}site_icons/visualization/coauthorship/CoAuthor.swf"/>
+
+
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
+
+
+<title>Co-Authorship Visualization</title>
+
+<script type="text/javascript" src="${adobeFlashDetector}"></script>
+
+<script language="JavaScript" type="text/javascript">
+<!--
+// -----------------------------------------------------------------------------
+// Globals
+// Major version of Flash required
+var requiredMajorVersion = 10;
+// Minor version of Flash required
+var requiredMinorVersion = 0;
+// Minor version of Flash required
+var requiredRevision = 0;
+// -----------------------------------------------------------------------------
+// -->
+</script>
+
+<script type="text/javascript" src="${jquery}"></script>
+<link href="${style}" rel="stylesheet" type="text/css" />
+
+</head>
+
+<body>
+<div id="topNav">
+  <h1>Co-Author <span>Network</span></h1>
+
+ 
+</div>
+<div id="body">
+  <div id="topShadow"></div>
+  <div id="bodyPannel" style="height:900px;">
+    <br class="spacer" />
+   <div id="visPanel" style="float:left; width:610px;">
+   <script language="JavaScript" type="text/javascript">
+
+function nodeClickedJS(obj){
+	$("#newsLetter").attr("style","visibility:visible");
+	$("#authorName").empty().append(obj[0]);
+	//$("#works").append("<img src='assets/Garfield.jpg'/><br /><br />");
+	$("#works").empty().append(obj[1]);
+	if(obj[2]){$("#profileUrl").attr("href",obj[2]);}
+	else{$("#profileUrl").attr("href","#");}
+	$("#coAuthorName").empty().append(obj[name]);	
+	if(obj[6]){$("#coAuthorUrl").attr("href",obj[6]);}
+	else{$("#coAuthorUrl").attr("href","#");}
+	$("#coAuthors").empty().append(obj[5]);	
+	$("#firstPublication").empty().append((obj[3])?obj[3]+" First Publication":"");
+	$("#lastPublication").empty().append((obj[4])?obj[4]+" Last Publication":"");
+	
+	//obj[7]:the url parameter for node
+	
+}
+<!--
+// Version check for the Flash Player that has the ability to start Player Product Install (6.0r65)
+var hasProductInstall = DetectFlashVer(6, 0, 65);
+
+// Version check based upon the values defined in globals
+var hasRequestedVersion = DetectFlashVer(requiredMajorVersion, requiredMinorVersion, requiredRevision);
+
+if ( hasProductInstall && !hasRequestedVersion ) {
+	// DO NOT MODIFY THE FOLLOWING FOUR LINES
+	// Location visited after installation is complete if installation is required
+	var MMPlayerType = (isIE == true) ? "ActiveX" : "PlugIn";
+	var MMredirectURL = window.location;
+    document.title = document.title.slice(0, 47) + " - Flash Player Installation";
+    var MMdoctitle = document.title;
+
+	AC_FL_RunContent(
+		"src", "playerProductInstall",
+		"FlashVars", "MMredirectURL="+MMredirectURL+'&MMplayerType='+MMPlayerType+'&MMdoctitle='+MMdoctitle+"",
+		"width", "600",
+		"height", "800",
+		"align", "middle",
+		"id", "CoAuthor",
+		"quality", "high",
+		"bgcolor", "#ffffff",
+		"name", "CoAuthor",
+		"allowScriptAccess","sameDomain",
+		"type", "application/x-shockwave-flash",
+		"pluginspage", "http://www.adobe.com/go/getflashplayer"
+	);
+} else if (hasRequestedVersion) {
+	// if we've detected an acceptable version
+	// embed the Flash Content SWF when all tests are passed
+	AC_FL_RunContent(
+			"src", "${swfLink}",
+			"flashVars", "graphmlUrl=${egoCoAuthorshipDataURL}",			
+			"width", "600",
+			"height", "800",
+			"align", "middle",
+			"id", "CoAuthor",
+			"quality", "high",
+			"bgcolor", "#ffffff",
+			"name", "CoAuthor",
+			"allowScriptAccess","sameDomain",
+			"type", "application/x-shockwave-flash",
+			"pluginspage", "http://www.adobe.com/go/getflashplayer"
+	);
+  } else {  // flash is too old or we can't detect the plugin
+    var alternateContent = 'Alternate HTML content should be placed here. '
+  	+ 'This content requires the Adobe Flash Player. '
+   	+ '<a href=http://www.adobe.com/go/getflash/>Get Flash</a>';
+    document.write(alternateContent);  // insert non-flash content
+  }
+// -->
+</script>
+
+   </div>
+   <div id="dataPanel" style="float:left; width:150px;">
+   <br/><br/><br/><br/><br/><br/>
+<div id="newsLetter" style="visibility:hidden"> <span class="nltop"></span>
+          <div class="middle" id="nodeData">
+          <div><img src="${noImage}" /></div>
+          <div class="bold"><strong><span id="authorName">&nbsp;</span></strong></div>
+         <!-- <div class="italicize">Professor</div>
+          <div class="italicize">Department of <span>???</span></div>
+          -->
+          <br />
+          <div class="works"><span class="numbers" style="width:40px;" id="works">6</span>&nbsp;&nbsp;<span class="title">Works</span></div>
+          <div class="works"><span class="numbers" style="width:40px;" id="coAuthors">78</span>&nbsp;&nbsp;<span>Co-author(s)</span></div>
+          <br/>
+          <div id="firstPublication"><span ></span>&nbsp;<span>First Publication</span></div>
+          <div id="lastPublication"><span ></span>&nbsp;Last Publication</div>
+          <br/>
+          <div><a href="#" id="profileUrl">Go to VIVO profile</a></div>
+          <br/>
+          <div><a href="#" id="coAuthorUrl">Go to ego-centric co-author network of <span id="coAuthorName"></span></a></div>
+        </div>
+          <br class="spacer">
+          <span class="nlbottom"></span></div>
+</div>
+  </div>
+  <div id="bottomShadow"></div>
+  <br class="spacer" />
+</div>
+<script>
+$(document).ready(function(){
+
+});
+</script>
+
+
+</body>
+</html>

webapp/web/templates/visualization/dummy_vis_client.jsp

@@ -87,12 +87,18 @@
 	<c:param name="uri" value="http://vivo.library.cornell.edu/ns/0.1#individual192"/>
 </c:url>
 
-<c:url var="coAuthorship1" value="/admin/visQuery">
+<c:url var="coAuthorship1Data" value="/admin/visQuery">
 	<c:param name="vis" value="coauthorship"/>
 	<c:param name="render_mode" value="data"/>
 	<c:param name="uri" value="http://vivo.library.cornell.edu/ns/0.1#individual5748"/>
 </c:url>
 
+<c:url var="coAuthorship1" value="/admin/visQuery">
+	<c:param name="vis" value="coauthorship"/>
+	<c:param name="render_mode" value="standalone"/>
+	<c:param name="uri" value="http://vivo.library.cornell.edu/ns/0.1#individual5748"/>
+</c:url>
+
 <c:url var="loadingImageLink" value="/${themeDir}site_icons/visualization/ajax-loader.gif"></c:url>
 
 <style type="text/css">
@@ -182,7 +188,8 @@ $(document).ready(function() {
 
 <h1 id="test-bed">Visualization Testbed (Not to be seen by eventual end users)</h1>
 
-<a href='<c:out value="${coAuthorship1}"/>'>vis data query for coauthorship -> "Erb, Hollis Nancy"</a><br />
+<a href='<c:out value="${coAuthorship1}"/>'>vis link for coauthorship -> "Erb, Hollis Nancy"</a><br />
+<a href='<c:out value="${coAuthorship1Data}"/>'>vis data query for coauthorship -> "Erb, Hollis Nancy"</a><br />
 <a href='<c:out value="${collegeCSV}"/>'>vis data query for college -> "School of Industrial and Labor Relations (ILR)"</a><br />
 <a href='<c:out value="${collegeCSV2}"/>'>vis data query for college -> "College of Agriculture and Life Sciences (CALS)"</a><br />
 <a href='<c:out value="${collegeCSV3}"/>'>vis data query for college -> "College of Arts and Sciences"</a><br />