1. Modified the content header for the graphML file so that it streams instead of downloading it to the user's machine as a file attachment. This is required because thats how the flash expects the input file to be.

2. Added Asik's first draft of the co-authorship visuazlization files. 
3. Integrated the front end with the back end.

webapp/src/edu/cornell/mannlib/vitro/webapp/visualization/coauthorship/CoAuthorshipGraphMLWriter.java

@@ -14,8 +14,7 @@ public class CoAuthorshipGraphMLWriter {
 	
 	private StringBuilder coAuthorshipGraphMLContent;
 
-	public final String GRAPHML_HEADER = ""
+	private final String GRAPHML_HEADER = "<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n" 
-	        + "	<?xml version=\"1.0\" encoding=\"UTF-8\"?>\n" 
 			+ "	<graphml xmlns=\"http://graphml.graphdrawing.org/xmlns\"\n"
 			+ "  xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\"\n"
 	        + "  xsi:schemaLocation=\"http://graphml.graphdrawing.org/xmlns\n"
@@ -29,6 +28,10 @@ public class CoAuthorshipGraphMLWriter {
 		
 	}
 
+	public StringBuilder getCoAuthorshipGraphMLContent() {
+		return coAuthorshipGraphMLContent;
+	}
+
 	private StringBuilder createCoAuthorshipGraphMLContent(
 			VisVOContainer visVOContainer) {
 		

webapp/src/edu/cornell/mannlib/vitro/webapp/visualization/coauthorship/VisualizationRequestHandler.java

@@ -3,14 +3,10 @@ package edu.cornell.mannlib.vitro.webapp.visualization.coauthorship;
 import java.io.ByteArrayOutputStream;
 import java.io.IOException;
 import java.io.PrintWriter;
-import java.util.HashMap;
-import java.util.HashSet;
 import java.util.Iterator;
 import java.util.List;
 import java.util.Map;
-import java.util.Set;
 import java.util.TreeMap;
-import java.util.Map.Entry;
 
 import javax.servlet.RequestDispatcher;
 import javax.servlet.ServletException;
@@ -19,8 +15,6 @@ import javax.servlet.http.HttpServletRequest;
 import javax.servlet.http.HttpServletResponse;
 
 import org.apache.commons.logging.Log;
-import org.skife.csv.CSVWriter;
-import org.skife.csv.SimpleWriter;
 
 import com.hp.hpl.jena.query.DataSource;
 import com.itextpdf.text.Document;
@@ -32,16 +26,10 @@ import edu.cornell.mannlib.vitro.webapp.controller.Controllers;
 import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
 import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
 import edu.cornell.mannlib.vitro.webapp.visualization.PDFDocument;
-import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
 import edu.cornell.mannlib.vitro.webapp.visualization.constants.VisConstants;
 import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
 import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.BiboDocument;
-import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Edge;
 import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Individual;
-import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Node;
-import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.VivoCollegeOrSchool;
-import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.VivoDepartmentOrDivision;
-import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.VivoEmployee;
 
 public class VisualizationRequestHandler {
 
@@ -99,14 +87,6 @@ public class VisualizationRequestHandler {
 	    	
 	    	
 	    	
-	    	/*
-	    	if (PDF_RENDER_MODE_URL_VALUE.equalsIgnoreCase(renderMode)) { 
-				prepareVisualizationQueryPDFResponse(authorDocuments,
-													  yearToPublicationCount);
-				return;
-			}
-	    	*/
-	    	
 	    	/*
 	    	 * Computations required to generate HTML for the sparklines & related context.
 	    	 * */
@@ -138,22 +118,13 @@ public class VisualizationRequestHandler {
 	    	 * a page with visualization on it.
 	    	 * */
 			
-			/*
 			RequestDispatcher requestDispatcher = null;
 
-			if (DYNAMIC_RENDER_MODE_URL_VALUE.equalsIgnoreCase(renderMode)) {
+	    	prepareVisualizationQueryStandaloneResponse(egoURIParam, request, response, vitroRequest);
 
-				prepareVisualizationQueryDynamicResponse(request, response, vitroRequest,
+//		    	requestDispatcher = request.getRequestDispatcher(Controllers.BASIC_JSP);
-		    			visContentCode, visContextCode);
 		    	requestDispatcher = request.getRequestDispatcher("/templates/page/blankPage.jsp");
 
-			} else {
-		    	prepareVisualizationQueryStandaloneResponse(request, response, vitroRequest,
-		    			visContentCode, visContextCode);
-
-		    	requestDispatcher = request.getRequestDispatcher(Controllers.BASIC_JSP);
-			}
-
 	    	try {
 	            requestDispatcher.forward(request, response);
 	        } catch (Exception e) {
@@ -162,7 +133,6 @@ public class VisualizationRequestHandler {
 	            log.error(e.getStackTrace());
 	        }
 
-*/
 		} catch (MalformedQueryParametersException e) {
 			try {
 				handleMalformedParameters(e.getMessage());
@@ -176,139 +146,9 @@ public class VisualizationRequestHandler {
 
 	}
 
-	private Map<String, Integer> getUpdatedDepartmentPublicationsOverTime(
-										Map<String, Integer> currentEmployeeYearToPublicationCount,
-										Map<String, Integer> currentDepartmentYearToPublicationCount) {
-		
-		Map<String, Integer> departmentYearToPublicationCount;
-		
-//		System.out.println("inside get updated dept pub obr time");
-		
-		/*
-		 * In case this is the first time we are consolidating publication counts over time for a department.
-		 * */
-		if (currentDepartmentYearToPublicationCount == null) {
-			departmentYearToPublicationCount = new TreeMap<String, Integer>();
-			
-//			System.out.println("new dept yr pub cnt");
-			
-		} else {
-			departmentYearToPublicationCount = currentDepartmentYearToPublicationCount;
-		}
-		
-		
-		Iterator employeePubCountIterator = currentEmployeeYearToPublicationCount.entrySet().iterator();
-		
-		while (employeePubCountIterator.hasNext()) {
-			Map.Entry<String, Integer> employeePubCountEntry = (Map.Entry) employeePubCountIterator.next();
-			
-			String employeePublicationYear = employeePubCountEntry.getKey();
-			Integer employeePublicationCount = employeePubCountEntry.getValue();
-			
-			try {
-			if (departmentYearToPublicationCount.containsKey(employeePublicationYear)) {
-				departmentYearToPublicationCount.put(employeePublicationYear,
-															departmentYearToPublicationCount
-																.get(employeePublicationYear) 
-															+ employeePublicationCount);
-
-    		} else {
-    			departmentYearToPublicationCount.put(employeePublicationYear, employeePublicationCount);
-    		}	
-			} catch (Exception e) {
-				e.printStackTrace();
-			}
-		}
-		
-		return departmentYearToPublicationCount;
-	}
-
-	private void prepareVisualizationQueryPDFResponse(Individual college, 
-													  List<BiboDocument> authorDocuments,
-													  Map<String, Integer> yearToPublicationCount) {
-		
-		String authorName = null; 
-		
-		/*
-		 * To protect against cases where there are no author documents associated with the
-		 * individual. 
-		 * */
-		if (authorDocuments.size() > 0) {
-			authorName = college.getIndividualLabel();
-		}
-		
-		/*
-		 * To make sure that null/empty records for author names do not cause any mischief.
-		 * */
-		if (authorName == null) {
-			authorName = "";
-		}
-		
-		String outputFileName = slugify(authorName + "-report") 
-								+ ".pdf";
-		
-		response.setContentType("application/pdf");
-		response.setHeader("Content-Disposition","attachment;filename=" + outputFileName);
- 
-			ServletOutputStream responseOutputStream;
-			try {
-				responseOutputStream = response.getOutputStream();
-				
-				
-				Document document = new Document();
-				ByteArrayOutputStream baos = new ByteArrayOutputStream();
-				PdfWriter pdfWriter = PdfWriter.getInstance(document, baos);
-				document.open();
-				
-				PDFDocument pdfDocument = new PDFDocument(authorName, 
-														  yearToPublicationCount, 
-														  document, 
-														  pdfWriter);
-				document.close();
-
-				response.setHeader("Expires", "0");
-				response.setHeader("Cache-Control", "must-revalidate, post-check=0, pre-check=0");
-				response.setHeader("Pragma", "public");
-				response.setContentLength(baos.size());
-				
-				baos.writeTo(responseOutputStream);
-				responseOutputStream.flush();
-				responseOutputStream.close();
-				
-			} catch (IOException e) {
-				e.printStackTrace();
-			} catch (DocumentException e) {
-				e.printStackTrace();
-			}
-	}
-
 	private void prepareVisualizationQueryDataResponse(VisVOContainer authorNodesAndEdges) {
 
-		String egoName = null;
+		response.setContentType("text/xml");
-		
-		Node egoNode = authorNodesAndEdges.getEgoNode();
-
-		
-		/*
-		* To protect against cases where there are no author documents associated with the
-		* individual. 
-		* */
-//		System.out.println(collegeURLToVO);
-		if (egoNode != null) {
-			egoName = egoNode.getNodeName();
-		}
-		
-		/*
-		* To make sure that null/empty records for author names do not cause any mischief.
-		* */
-		if (egoName == null) {
-		egoName = "";
-		}
-		
-		String outputFileName = slugify(egoName) + "co-authorship" + ".txt";
-		
-		response.setContentType("application/octet-stream");
-		response.setHeader("Content-Disposition","attachment;filename=" + outputFileName);
 		
 		try {
 		
@@ -318,97 +158,34 @@ public class VisualizationRequestHandler {
 		 * We are side-effecting responseWriter since we are directly manipulating the response 
 		 * object of the servlet.
 		 * */
-		generateCsvFileBuffer(authorNodesAndEdges, 
+		
-							  responseWriter);
+		CoAuthorshipGraphMLWriter coAuthorShipGraphMLWriter = new CoAuthorshipGraphMLWriter(authorNodesAndEdges);
+		
+		responseWriter.append(coAuthorShipGraphMLWriter.getCoAuthorshipGraphMLContent());
 		
 		responseWriter.close();
 		
 		} catch (IOException e) {
-		e.printStackTrace();
+			e.printStackTrace();
 		}
 	}
 	
-	/**
+	private void prepareVisualizationQueryStandaloneResponse(String egoURIParam, 
-	 * Currently the approach for slugifying filenames is naive. In future if there is need, 
+															 HttpServletRequest request,
-	 * we can write more sophisticated method.
+															 HttpServletResponse response, 
-	 * @param textToBeSlugified
+															 VitroRequest vreq) {
-	 * @return
-	 */
-	private String slugify(String textToBeSlugified) {
-		return textToBeSlugified.toLowerCase().replaceAll("[^a-zA-Z0-9-]", "-")
-								.substring(0, VisConstants.MAX_NAME_TEXT_LENGTH);
-	}
-
-	private void generateCsvFileBuffer(VisVOContainer authorNodesAndEdges, 
-									   PrintWriter printWriter) {
-		
-        Node egoNode = authorNodesAndEdges.getEgoNode();
-		Set<Node> authorNodes = authorNodesAndEdges.getNodes();
-		Set<Edge> edges = authorNodesAndEdges.getEdges();
-		
-		printWriter.append("\nEGO => ");
-		printWriter.append(egoNode.getNodeID() + " - " + egoNode.getNodeName() + " -> " + egoNode.getNodeURL() + "\n");
-		printWriter.append("\tEarliest Publication - " + egoNode.getEarliestPublicationYearCount() 
-							+ "\n\tLatest Publication - " + egoNode.getLatestPublicationYearCount()
-							+ "\n\tUnknown Publication - " + egoNode.getUnknownPublicationYearCount());
-		
-//		authorNodes.remove(egoNode);
-		
-		for (Node currNode : authorNodes) {
-			
-			printWriter.append("\nCO-AUTHOR => ");
-			printWriter.append(currNode.getNodeID() + " - " + currNode.getNodeName() + " -> " + currNode.getNodeURL() + "\n");
-			printWriter.append("\tEarliest Publication - " + currNode.getEarliestPublicationYearCount() 
-								+ "\n\tLatest Publication - " + currNode.getLatestPublicationYearCount()
-								+ "\n\tUnknown Publication - " + currNode.getUnknownPublicationYearCount()
-								+ "\n\tTotal Publications - " + currNode.getNumOfAuthoredWorks());
-			
-			
-		}
-		
-		for (Edge currentEdge : edges) {
-			
-			printWriter.append("\nEdge => ");
-			printWriter.append(currentEdge.getEdgeID() + " => " + currentEdge.getSourceNode().getNodeName() + " - " 
-									+ currentEdge.getTargetNode().getNodeName() + "\n");
-			printWriter.append("\tEarliest Collaboration - " + currentEdge.getEarliestCollaborationYearCount() 
-								+ "\n\tLatest Collaboration - " + currentEdge.getLatestCollaborationYearCount()
-								+ "\n\tUnknown Collaboration - " + currentEdge.getUnknownCollaborationYearCount()
-								+ "\n\tTotal Collaboration - " + currentEdge.getNumOfCoAuthoredWorks());
-			
-		}
-		
-		printWriter.flush();
-		
-	}
-
-	private void prepareVisualizationQueryStandaloneResponse(HttpServletRequest request,
-			HttpServletResponse response, VitroRequest vreq,
-			String visContentCode, String visContextCode) {
 
         Portal portal = vreq.getPortal();
 
-        request.setAttribute("visContentCode", visContentCode);
+//        request.setAttribute("visContentCode", visContentCode);
-        request.setAttribute("visContextCode", visContextCode);
+//        request.setAttribute("visContextCode", visContextCode);
 
-        request.setAttribute("bodyJsp", "/templates/visualization/publication_count.jsp");
+        request.setAttribute("egoURIParam", egoURIParam);
+        
+        request.setAttribute("bodyJsp", "/templates/visualization/co_authorship.jsp");
         request.setAttribute("portalBean", portal);
-        request.setAttribute("title", "Individual Publication Count Visualization");
+//        request.setAttribute("title", "Individual Publication Count Visualization");
-        request.setAttribute("scripts", "/templates/visualization/visualization_scripts.jsp");
+//        request.setAttribute("scripts", "/templates/visualization/visualization_scripts.jsp");
-
-	}
-
-	private void prepareVisualizationQueryDynamicResponse(HttpServletRequest request,
-			HttpServletResponse response, VitroRequest vreq,
-			String visContentCode, String visContextCode) {
-
-        Portal portal = vreq.getPortal();
-
-        request.setAttribute("visContentCode", visContentCode);
-        request.setAttribute("visContextCode", visContextCode);
-
-        request.setAttribute("portalBean", portal);
-        request.setAttribute("bodyJsp", "/templates/visualization/ajax_vis_content.jsp");
 
 	}
 

webapp/web/js/visualization/coauthorship/AC_OETags.js

@@ -0,0 +1,292 @@
+// Flash Player Version Detection - Rev 1.6
+// Detect Client Browser type
+// Copyright(c) 2005-2006 Adobe Macromedia Software, LLC. All rights reserved.
+var isIE  = (navigator.appVersion.indexOf("MSIE") != -1) ? true : false;
+var isWin = (navigator.appVersion.toLowerCase().indexOf("win") != -1) ? true : false;
+var isOpera = (navigator.userAgent.indexOf("Opera") != -1) ? true : false;
+
+function ControlVersion()
+{
+	var version;
+	var axo;
+	var e;
+
+	// NOTE : new ActiveXObject(strFoo) throws an exception if strFoo isn't in the registry
+
+	try {
+		// version will be set for 7.X or greater players
+		axo = new ActiveXObject("ShockwaveFlash.ShockwaveFlash.7");
+		version = axo.GetVariable("$version");
+	} catch (e) {
+	}
+
+	if (!version)
+	{
+		try {
+			// version will be set for 6.X players only
+			axo = new ActiveXObject("ShockwaveFlash.ShockwaveFlash.6");
+			
+			// installed player is some revision of 6.0
+			// GetVariable("$version") crashes for versions 6.0.22 through 6.0.29,
+			// so we have to be careful. 
+			
+			// default to the first public version
+			version = "WIN 6,0,21,0";
+
+			// throws if AllowScripAccess does not exist (introduced in 6.0r47)		
+			axo.AllowScriptAccess = "always";
+
+			// safe to call for 6.0r47 or greater
+			version = axo.GetVariable("$version");
+
+		} catch (e) {
+		}
+	}
+
+	if (!version)
+	{
+		try {
+			// version will be set for 4.X or 5.X player
+			axo = new ActiveXObject("ShockwaveFlash.ShockwaveFlash.3");
+			version = axo.GetVariable("$version");
+		} catch (e) {
+		}
+	}
+
+	if (!version)
+	{
+		try {
+			// version will be set for 3.X player
+			axo = new ActiveXObject("ShockwaveFlash.ShockwaveFlash.3");
+			version = "WIN 3,0,18,0";
+		} catch (e) {
+		}
+	}
+
+	if (!version)
+	{
+		try {
+			// version will be set for 2.X player
+			axo = new ActiveXObject("ShockwaveFlash.ShockwaveFlash");
+			version = "WIN 2,0,0,11";
+		} catch (e) {
+			version = -1;
+		}
+	}
+	
+	return version;
+}
+
+// JavaScript helper required to detect Flash Player PlugIn version information
+function GetSwfVer(){
+	// NS/Opera version >= 3 check for Flash plugin in plugin array
+	var flashVer = -1;
+	
+	if (navigator.plugins != null && navigator.plugins.length > 0) {
+		if (navigator.plugins["Shockwave Flash 2.0"] || navigator.plugins["Shockwave Flash"]) {
+			var swVer2 = navigator.plugins["Shockwave Flash 2.0"] ? " 2.0" : "";
+			var flashDescription = navigator.plugins["Shockwave Flash" + swVer2].description;
+			var descArray = flashDescription.split(" ");
+			var tempArrayMajor = descArray[2].split(".");			
+			var versionMajor = tempArrayMajor[0];
+			var versionMinor = tempArrayMajor[1];
+			var versionRevision = descArray[3];
+			if (versionRevision == "") {
+				versionRevision = descArray[4];
+			}
+			if (versionRevision[0] == "d") {
+				versionRevision = versionRevision.substring(1);
+			} else if (versionRevision[0] == "r") {
+				versionRevision = versionRevision.substring(1);
+				if (versionRevision.indexOf("d") > 0) {
+					versionRevision = versionRevision.substring(0, versionRevision.indexOf("d"));
+				}
+			} else if (versionRevision[0] == "b") {
+				versionRevision = versionRevision.substring(1);
+			}
+			var flashVer = versionMajor + "." + versionMinor + "." + versionRevision;
+		}
+	}
+	// MSN/WebTV 2.6 supports Flash 4
+	else if (navigator.userAgent.toLowerCase().indexOf("webtv/2.6") != -1) flashVer = 4;
+	// WebTV 2.5 supports Flash 3
+	else if (navigator.userAgent.toLowerCase().indexOf("webtv/2.5") != -1) flashVer = 3;
+	// older WebTV supports Flash 2
+	else if (navigator.userAgent.toLowerCase().indexOf("webtv") != -1) flashVer = 2;
+	else if ( isIE && isWin && !isOpera ) {
+		flashVer = ControlVersion();
+	}
+	return flashVer;
+}
+
+// When called with reqMajorVer, reqMinorVer, reqRevision returns true if that version or greater is available
+function DetectFlashVer(reqMajorVer, reqMinorVer, reqRevision)
+{
+	versionStr = GetSwfVer();
+	if (versionStr == -1 ) {
+		return false;
+	} else if (versionStr != 0) {
+		if(isIE && isWin && !isOpera) {
+			// Given "WIN 2,0,0,11"
+			tempArray         = versionStr.split(" "); 	// ["WIN", "2,0,0,11"]
+			tempString        = tempArray[1];			// "2,0,0,11"
+			versionArray      = tempString.split(",");	// ['2', '0', '0', '11']
+		} else {
+			versionArray      = versionStr.split(".");
+		}
+		var versionMajor      = versionArray[0];
+		var versionMinor      = versionArray[1];
+		var versionRevision   = versionArray[2];
+
+        	// is the major.revision >= requested major.revision AND the minor version >= requested minor
+		if (versionMajor > parseFloat(reqMajorVer)) {
+			return true;
+		} else if (versionMajor == parseFloat(reqMajorVer)) {
+			if (versionMinor > parseFloat(reqMinorVer))
+				return true;
+			else if (versionMinor == parseFloat(reqMinorVer)) {
+				if (versionRevision >= parseFloat(reqRevision))
+					return true;
+			}
+		}
+		return false;
+	}
+}
+
+function AC_AddExtension(src, ext)
+{
+  var qIndex = src.indexOf('?');
+  if ( qIndex != -1)
+  {
+    // Add the extention (if needed) before the query params
+    var path = src.substring(0, qIndex);
+    if (path.length >= ext.length && path.lastIndexOf(ext) == (path.length - ext.length))
+      return src;
+    else
+      return src.replace(/\?/, ext+'?'); 
+  }
+  else
+  {
+    // Add the extension (if needed) to the end of the URL
+    if (src.length >= ext.length && src.lastIndexOf(ext) == (src.length - ext.length))
+      return src;  // Already have extension
+    else
+      return src + ext;
+  }
+}
+
+function AC_Generateobj(objAttrs, params, embedAttrs) 
+{ 
+    var str = '';
+    if (isIE && isWin && !isOpera)
+    {
+  		str += '<object ';
+  		for (var i in objAttrs)
+  			str += i + '="' + objAttrs[i] + '" ';
+  		str += '>';
+  		for (var i in params)
+  			str += '<param name="' + i + '" value="' + params[i] + '" /> ';
+  		str += '</object>';
+    } else {
+  		str += '<embed ';
+  		for (var i in embedAttrs)
+  			str += i + '="' + embedAttrs[i] + '" ';
+  		str += '> </embed>';
+    }
+
+    document.write(str);
+}
+
+function AC_FL_RunContent(){
+  var ret = 
+    AC_GetArgs
+    (  arguments, ".swf", "movie", "clsid:d27cdb6e-ae6d-11cf-96b8-444553540000"
+     , "application/x-shockwave-flash"
+    );
+  AC_Generateobj(ret.objAttrs, ret.params, ret.embedAttrs);
+}
+
+function AC_GetArgs(args, ext, srcParamName, classid, mimeType){
+  var ret = new Object();
+  ret.embedAttrs = new Object();
+  ret.params = new Object();
+  ret.objAttrs = new Object();
+  for (var i=0; i < args.length; i=i+2){
+    var currArg = args[i].toLowerCase();    
+
+    switch (currArg){	
+      case "classid":
+        break;
+      case "pluginspage":
+        ret.embedAttrs[args[i]] = args[i+1];
+        break;
+      case "src":
+      case "movie":	
+        args[i+1] = AC_AddExtension(args[i+1], ext);
+        ret.embedAttrs["src"] = args[i+1];
+        ret.params[srcParamName] = args[i+1];
+        break;
+      case "onafterupdate":
+      case "onbeforeupdate":
+      case "onblur":
+      case "oncellchange":
+      case "onclick":
+      case "ondblClick":
+      case "ondrag":
+      case "ondragend":
+      case "ondragenter":
+      case "ondragleave":
+      case "ondragover":
+      case "ondrop":
+      case "onfinish":
+      case "onfocus":
+      case "onhelp":
+      case "onmousedown":
+      case "onmouseup":
+      case "onmouseover":
+      case "onmousemove":
+      case "onmouseout":
+      case "onkeypress":
+      case "onkeydown":
+      case "onkeyup":
+      case "onload":
+      case "onlosecapture":
+      case "onpropertychange":
+      case "onreadystatechange":
+      case "onrowsdelete":
+      case "onrowenter":
+      case "onrowexit":
+      case "onrowsinserted":
+      case "onstart":
+      case "onscroll":
+      case "onbeforeeditfocus":
+      case "onactivate":
+      case "onbeforedeactivate":
+      case "ondeactivate":
+      case "type":
+      case "codebase":
+        ret.objAttrs[args[i]] = args[i+1];
+        break;
+      case "id":
+      case "width":
+      case "height":
+      case "align":
+      case "vspace": 
+      case "hspace":
+      case "class":
+      case "title":
+      case "accesskey":
+      case "name":
+      case "tabindex":
+        ret.embedAttrs[args[i]] = ret.objAttrs[args[i]] = args[i+1];
+        break;
+      default:
+        ret.embedAttrs[args[i]] = ret.params[args[i]] = args[i+1];
+    }
+  }
+  ret.objAttrs["classid"] = classid;
+  if (mimeType) ret.embedAttrs["type"] = mimeType;
+  return ret;
+}
+
+

webapp/web/templates/visualization/co_authorship.jsp

@@ -0,0 +1,171 @@
+<%@ taglib uri="http://java.sun.com/jstl/core" prefix="c" %>
+<%@ taglib uri="http://java.sun.com/jsp/jstl/functions" prefix="fn"%>
+
+<c:set var="portalBean" value="${requestScope.portalBean}"/>
+<c:set var="themeDir"><c:out value="${portalBean.themeDir}" /></c:set>
+
+<c:url var="egoCoAuthorshipDataURL" value="/admin/visQuery">
+	<c:param name="vis" value="coauthorship"/>
+	<c:param name="render_mode" value="data"/>
+	<c:param name="uri" value="${requestScope.egoURIParam}"/>
+	<c:param name="labelField" value="name"/>
+</c:url>
+
+<c:url var="jquery" value="/js/jquery.js"/>
+<c:url var="adobeFlashDetector" value="/js/visualization/coauthorship/AC_OETags.js"/>
+<c:url var="style" value="/${themeDir}css/visualization/coauthorship/style.css"/>
+<c:url var="noImage" value="/${themeDir}site_icons/visualization/coauthorship/no_image.png"/>
+<c:url var="swfLink" value="/${themeDir}site_icons/visualization/coauthorship/CoAuthor.swf"/>
+
+
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1" />
+
+
+<title>Co-Authorship Visualization</title>
+
+<script type="text/javascript" src="${adobeFlashDetector}"></script>
+
+<script language="JavaScript" type="text/javascript">
+<!--
+// -----------------------------------------------------------------------------
+// Globals
+// Major version of Flash required
+var requiredMajorVersion = 10;
+// Minor version of Flash required
+var requiredMinorVersion = 0;
+// Minor version of Flash required
+var requiredRevision = 0;
+// -----------------------------------------------------------------------------
+// -->
+</script>
+
+<script type="text/javascript" src="${jquery}"></script>
+<link href="${style}" rel="stylesheet" type="text/css" />
+
+</head>
+
+<body>
+<div id="topNav">
+  <h1>Co-Author <span>Network</span></h1>
+
+ 
+</div>
+<div id="body">
+  <div id="topShadow"></div>
+  <div id="bodyPannel" style="height:900px;">
+    <br class="spacer" />
+   <div id="visPanel" style="float:left; width:610px;">
+   <script language="JavaScript" type="text/javascript">
+
+function nodeClickedJS(obj){
+	$("#newsLetter").attr("style","visibility:visible");
+	$("#authorName").empty().append(obj[0]);
+	//$("#works").append("<img src='assets/Garfield.jpg'/><br /><br />");
+	$("#works").empty().append(obj[1]);
+	if(obj[2]){$("#profileUrl").attr("href",obj[2]);}
+	else{$("#profileUrl").attr("href","#");}
+	$("#coAuthorName").empty().append(obj[name]);	
+	if(obj[6]){$("#coAuthorUrl").attr("href",obj[6]);}
+	else{$("#coAuthorUrl").attr("href","#");}
+	$("#coAuthors").empty().append(obj[5]);	
+	$("#firstPublication").empty().append((obj[3])?obj[3]+" First Publication":"");
+	$("#lastPublication").empty().append((obj[4])?obj[4]+" Last Publication":"");
+	
+	//obj[7]:the url parameter for node
+	
+}
+<!--
+// Version check for the Flash Player that has the ability to start Player Product Install (6.0r65)
+var hasProductInstall = DetectFlashVer(6, 0, 65);
+
+// Version check based upon the values defined in globals
+var hasRequestedVersion = DetectFlashVer(requiredMajorVersion, requiredMinorVersion, requiredRevision);
+
+if ( hasProductInstall && !hasRequestedVersion ) {
+	// DO NOT MODIFY THE FOLLOWING FOUR LINES
+	// Location visited after installation is complete if installation is required
+	var MMPlayerType = (isIE == true) ? "ActiveX" : "PlugIn";
+	var MMredirectURL = window.location;
+    document.title = document.title.slice(0, 47) + " - Flash Player Installation";
+    var MMdoctitle = document.title;
+
+	AC_FL_RunContent(
+		"src", "playerProductInstall",
+		"FlashVars", "MMredirectURL="+MMredirectURL+'&MMplayerType='+MMPlayerType+'&MMdoctitle='+MMdoctitle+"",
+		"width", "600",
+		"height", "800",
+		"align", "middle",
+		"id", "CoAuthor",
+		"quality", "high",
+		"bgcolor", "#ffffff",
+		"name", "CoAuthor",
+		"allowScriptAccess","sameDomain",
+		"type", "application/x-shockwave-flash",
+		"pluginspage", "http://www.adobe.com/go/getflashplayer"
+	);
+} else if (hasRequestedVersion) {
+	// if we've detected an acceptable version
+	// embed the Flash Content SWF when all tests are passed
+	AC_FL_RunContent(
+			"src", "${swfLink}",
+			"flashVars", "graphmlUrl=${egoCoAuthorshipDataURL}",			
+			"width", "600",
+			"height", "800",
+			"align", "middle",
+			"id", "CoAuthor",
+			"quality", "high",
+			"bgcolor", "#ffffff",
+			"name", "CoAuthor",
+			"allowScriptAccess","sameDomain",
+			"type", "application/x-shockwave-flash",
+			"pluginspage", "http://www.adobe.com/go/getflashplayer"
+	);
+  } else {  // flash is too old or we can't detect the plugin
+    var alternateContent = 'Alternate HTML content should be placed here. '
+  	+ 'This content requires the Adobe Flash Player. '
+   	+ '<a href=http://www.adobe.com/go/getflash/>Get Flash</a>';
+    document.write(alternateContent);  // insert non-flash content
+  }
+// -->
+</script>
+
+   </div>
+   <div id="dataPanel" style="float:left; width:150px;">
+   <br/><br/><br/><br/><br/><br/>
+<div id="newsLetter" style="visibility:hidden"> <span class="nltop"></span>
+          <div class="middle" id="nodeData">
+          <div><img src="${noImage}" /></div>
+          <div class="bold"><strong><span id="authorName">&nbsp;</span></strong></div>
+         <!-- <div class="italicize">Professor</div>
+          <div class="italicize">Department of <span>???</span></div>
+          -->
+          <br />
+          <div class="works"><span class="numbers" style="width:40px;" id="works">6</span>&nbsp;&nbsp;<span class="title">Works</span></div>
+          <div class="works"><span class="numbers" style="width:40px;" id="coAuthors">78</span>&nbsp;&nbsp;<span>Co-author(s)</span></div>
+          <br/>
+          <div id="firstPublication"><span ></span>&nbsp;<span>First Publication</span></div>
+          <div id="lastPublication"><span ></span>&nbsp;Last Publication</div>
+          <br/>
+          <div><a href="#" id="profileUrl">Go to VIVO profile</a></div>
+          <br/>
+          <div><a href="#" id="coAuthorUrl">Go to ego-centric co-author network of <span id="coAuthorName"></span></a></div>
+        </div>
+          <br class="spacer">
+          <span class="nlbottom"></span></div>
+</div>
+  </div>
+  <div id="bottomShadow"></div>
+  <br class="spacer" />
+</div>
+<script>
+$(document).ready(function(){
+
+});
+</script>
+
+
+</body>
+</html>

webapp/web/templates/visualization/dummy_vis_client.jsp

@@ -87,12 +87,18 @@
 	<c:param name="uri" value="http://vivo.library.cornell.edu/ns/0.1#individual192"/>
 </c:url>
 
-<c:url var="coAuthorship1" value="/admin/visQuery">
+<c:url var="coAuthorship1Data" value="/admin/visQuery">
 	<c:param name="vis" value="coauthorship"/>
 	<c:param name="render_mode" value="data"/>
 	<c:param name="uri" value="http://vivo.library.cornell.edu/ns/0.1#individual5748"/>
 </c:url>
 
+<c:url var="coAuthorship1" value="/admin/visQuery">
+	<c:param name="vis" value="coauthorship"/>
+	<c:param name="render_mode" value="standalone"/>
+	<c:param name="uri" value="http://vivo.library.cornell.edu/ns/0.1#individual5748"/>
+</c:url>
+
 <c:url var="loadingImageLink" value="/${themeDir}site_icons/visualization/ajax-loader.gif"></c:url>
 
 <style type="text/css">
@@ -182,7 +188,8 @@ $(document).ready(function() {
 
 <h1 id="test-bed">Visualization Testbed (Not to be seen by eventual end users)</h1>
 
-<a href='<c:out value="${coAuthorship1}"/>'>vis data query for coauthorship -> "Erb, Hollis Nancy"</a><br />
+<a href='<c:out value="${coAuthorship1}"/>'>vis link for coauthorship -> "Erb, Hollis Nancy"</a><br />
+<a href='<c:out value="${coAuthorship1Data}"/>'>vis data query for coauthorship -> "Erb, Hollis Nancy"</a><br />
 <a href='<c:out value="${collegeCSV}"/>'>vis data query for college -> "School of Industrial and Labor Relations (ILR)"</a><br />
 <a href='<c:out value="${collegeCSV2}"/>'>vis data query for college -> "College of Agriculture and Life Sciences (CALS)"</a><br />
 <a href='<c:out value="${collegeCSV3}"/>'>vis data query for college -> "College of Arts and Sciences"</a><br />