updates for NIHVIVO-3271 and NIHVIVO-3207
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3 changed files with 8 additions and 25 deletions
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@ -8,9 +8,7 @@ import com.hp.hpl.jena.ontology.OntClass;
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import com.hp.hpl.jena.ontology.OntModel;
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import com.hp.hpl.jena.ontology.OntModelSpec;
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import com.hp.hpl.jena.rdf.model.ModelFactory;
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import com.hp.hpl.jena.rdf.model.Property;
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import com.hp.hpl.jena.rdf.model.Resource;
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import com.hp.hpl.jena.rdf.model.ResourceFactory;
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public class DisplayVocabulary {
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@ -146,48 +146,33 @@ public class ABoxUpdater {
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StmtIterator iter = aboxModel.listStatements(oldClass, (Property) null, (RDFNode) null);
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int renameCount = 0;
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int removeCount = 0;
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while (iter.hasNext()) {
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Statement oldStatement = iter.next();
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if (newTBoxAnnotationsModel.contains(oldStatement)) {
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continue;
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// if this statement was loaded from the new annotations,
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// don't attempt to remove it.
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// This happens in cases where a class hasn't really
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// been removed, but we just want to map any ABox
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// data using it to use a different class instead.
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} else {
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removeCount++;
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retractions.add(oldStatement);
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}
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//logChange(oldStatement, false);
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//logChange(newStatement,true);
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removeCount++;
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retractions.add(oldStatement);
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}
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//log summary of changes
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if (renameCount > 0) {
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logger.log("Changed " + renameCount + " subject reference" + ((renameCount > 1) ? "s" : "") + " from type" + oldClass.getURI() + " to type " + newClass.getURI());
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}
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if (removeCount > 0) {
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logger.log("Removed " + removeCount + " subject reference" + ((removeCount > 1) ? "s" : "") + " to the " + oldClass.getURI() + " class");
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}
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// Change class references in the objects of rdf:type statements
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iter = aboxModel.listStatements((Resource) null, (Property) null, oldClass);
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iter = aboxModel.listStatements((Resource) null, RDF.type, oldClass);
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renameCount = 0;
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int renameCount = 0;
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while (iter.hasNext()) {
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renameCount++;
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Statement oldStatement = iter.next();
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Statement newStatement = ResourceFactory.createStatement(oldStatement.getSubject(), oldStatement.getPredicate(), newClass);
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Statement newStatement = ResourceFactory.createStatement(oldStatement.getSubject(), RDF.type, newClass);
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retractions.add(oldStatement);
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additions.add(newStatement);
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}
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//log summary of changes
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if (renameCount > 0) {
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logger.log("Renamed " + renameCount + " object reference" + ((renameCount > 1) ? "s" : "") + " from type " + oldClass.getURI() + " to type " + newClass.getURI());
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logger.log("Retyped " + renameCount + " individual" + ((renameCount > 1) ? "s" : "") + " from type " + oldClass.getURI() + " to type " + newClass.getURI());
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}
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aboxModel.remove(retractions);
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@ -1024,7 +1024,7 @@ public class SimpleReasoner extends StatementListener {
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* then reconciled with the inference graph used by the
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* application. The model reconciliation must be done
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* without reading the whole inference models into
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* memory since we are supporting very large ABox
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* memory in order to support very large ABox
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* inference models.
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*/
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public synchronized void recomputeABox() {
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@ -1390,7 +1390,7 @@ public class SimpleReasoner extends StatementListener {
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log.info("received BulkUpdateEvent(begin)");
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if (batchMode1 || batchMode2) {
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log.info("received a BulkUpdateEvent(begin) while already in batch update mode; this event will be ignored.");
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log.info("received a BulkUpdateEvent(begin) while already in batch update mode; this event will be ignored (and processing in batch mode will continue until there are no pending updates)");
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return;
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} else {
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batchMode1 = true;
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