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226 commits

Author SHA1 Message Date
Georgy Litvinov
f16eef642a Use unique key in account activation link and reset password link (#234) 
* Use unique key for email activation and password reset

* Renamed old variable from hash to key

* Check for null before setting email key for backward compatibility. Removed comment about old behaviour.

* Send password_change_invalid_key message instead of password_change_not_pending on key mismatch.
 2021-06-12 18:56:16 +02:00
Brian Lowe
0df4231b41 Move event listening to RDFServiceGraph level to avoid adding a new redundant listener each time a model is made for an existing RDFServiceGraph. Resolve https://jira.lyrasis.org/browse/VIVO-1976 2021-04-12 13:05:52 +02:00
Brian Lowe
48297bba56 Allow site admins to edit pages in page management. Resolve https://jira.lyrasis.org/browse/VIVO-1973 2021-04-09 15:34:15 +02:00
Georgy Litvinov
32f817e73a Autoselect hits per page from query. 2021-04-07 18:04:34 +02:00
Georgy Litvinov
63f15a90ef Fixed delete individual url params 2021-03-01 21:56:42 +01:00
Georgy Litvinov
cb35b5f647 Open try block before creating query 2021-03-01 12:32:21 +01:00
Georgy Litvinov
2f8fa040db Allow admins delete individuals 2021-02-25 23:17:32 +01:00
Georgy Litvinov
1590d58830 Process query builder rules in custom search controller 2021-02-24 01:17:53 +01:00
Georgy Litvinov
a6fa88bd1f Cleaned custom search controller 2021-02-23 20:39:55 +01:00
Georgy Litvinov
d6eb01de9c Fix naming mistake in describe query 2021-02-18 18:53:07 +01:00
Georgy Litvinov
af9820b7f3 Added template model, freemarker macro and pass checks in EditRequestDispatchController for individual deletion 2021-02-18 18:33:52 +01:00
William Welling
2e0b3f0f05 VIVO-1929: patch authorizing create individual form (#206) 
* patch authorizing create individual form

Resolves: https://jira.lyrasis.org/browse/VIVO-1929
 2021-02-17 15:25:39 +01:00
Georgy Litvinov
4fdbb71fee Added code for deleting individuals 2021-02-17 14:15:10 +01:00
Georgy Litvinov
9d48755893 Removed unused code 2020-09-21 15:21:44 +02:00
Georgy Litvinov
98398a58b6 Switch to custom search service 2020-08-18 15:07:34 +02:00
Georgy Litvinov
ee16a2863d Configured used html tags 2020-08-03 16:53:44 +02:00
Georgy Litvinov
38e8d326a6 Fix compile error 2020-08-03 16:16:23 +02:00
Georgy Litvinov
d2a3a73d3c Antisamy policy fixes 2020-08-03 16:16:02 +02:00
Georgy Litvinov
06e1e104df Added search queries 2020-07-14 14:14:00 +02:00
Ben
e198fce908
[VIVO-1872] - Add download option to SPARQL Query page (#164) 
* Add download option to SPARQL Query page

* Set SPARQL query results content type even if downloading

* Address pull request comments
 2020-05-27 23:58:20 -05:00
Ben
42c69ef04b
[VIVO-1851] - Add 'remove' option to named graph management page (#162) 
* Add 'remove' option to named graph management page

Resolves: https://jira.lyrasis.org/browse/VIVO-1851
 2020-05-13 13:19:52 -04:00
Andrew Woods
6d30a0fcd4
Change Model writer lang from "N3-PP" to "N3" (#149) 
Resolves: https://jira.lyrasis.org/browse/VIVO-1761

Co-authored-by: Andrew Woods <awoods@duraspace.org>
 2020-04-07 21:30:56 +03:00
Ben
edef9309ab
[VIVO-1755] - Better error handling when reasoner disabled (#137) 
* Better error handling when reasoner disabled

* Change reasoner error log message to debug

* Extend reasoner status error handling

* Improve reasoner error log message and extend to JenaAdminActions

* Bump up log level for admin action to 'warn' and edit admin panel error message
 2020-03-31 11:25:26 -05:00
gneissone
4efe43c7e7 Make data property richtext editor option selectable from UI 2020-03-21 19:15:05 -06:00
Ralph O'Flinn
777fa43864 [maven-scm-plugin] prepare development vitro-1.11.2-SNAPSHOT 2020-03-07 10:31:59 -06:00
Ralph O'Flinn
850cc6adbf [maven-scm-plugin] prepare release vivo-1.11.1 2020-03-07 10:29:22 -06:00
hudajkhan
7420957c65
authorization update for self editors (#106) 
* authorization update for self editors

* updating with Brian Lowe's suggestions

* removing extra import per Benjamin Gross's suggestion

* updating indentations

* hoping indentation fixed

* updating code after merging in from master
 2020-02-20 18:07:08 -07:00
Graham Triggs
6d64d27fe4 [VIVO-1737] Update Error Prone (#131) 
Resolves: https://jira.lyrasis.org/browse/VIVO-1737
 2020-01-23 13:12:03 -05:00
Ralph O'Flinn
b1b620d927 [maven-scm-plugin] prepare development vitro-1.11.1-SNAPSHOT 2019-10-21 00:49:31 -05:00
Ralph O'Flinn
0f25660b42 [maven-scm-plugin] prepare release vitro-1.11.0 2019-10-21 00:45:50 -05:00
Ralph O'Flinn
b45d20c9e4 VIVO-1614 - Update to allow the TPF API to be toggled via the runtime.properties. (#127) 
* Update to allow the TPF API to be toggled via the runtime.properties.

Resolves: https://jira.duraspace.org/browse/VIVO-1614
 2019-08-02 13:20:15 -04:00
Brian Lowe
cc2b98dac0
Merge pull request #126 from vivo-project/dev-search 
Dev search
 2019-07-24 17:11:47 +03:00
Kevin Backhouse
dd04f3def8 Add sanitization to fix SPARQL injection vulnerability. (#111) 
Resolves https://jira.duraspace.org/browse/VIVO-1697
 2019-07-15 12:15:03 -06:00
Ralph O'Flinn
d8649a60ad Merge branch 'sprint-search' into dev-search 
# Conflicts:
#	home/src/main/resources/solr/README.txt
#	home/src/main/resources/solr/conf/admin-extra.html
#	home/src/main/resources/solr/conf/clustering/carrot2/kmeans-attributes.xml
#	home/src/main/resources/solr/conf/clustering/carrot2/lingo-attributes.xml
#	home/src/main/resources/solr/conf/clustering/carrot2/stc-attributes.xml
#	home/src/main/resources/solr/conf/currency.xml
#	home/src/main/resources/solr/conf/elevate.xml
#	home/src/main/resources/solr/conf/lang/contractions_it.txt
#	home/src/main/resources/solr/conf/lang/stoptags_ja.txt
#	home/src/main/resources/solr/conf/lang/stopwords_ar.txt
#	home/src/main/resources/solr/conf/lang/stopwords_ca.txt
#	home/src/main/resources/solr/conf/lang/stopwords_el.txt
#	home/src/main/resources/solr/conf/lang/stopwords_fi.txt
#	home/src/main/resources/solr/conf/lang/stopwords_hi.txt
#	home/src/main/resources/solr/conf/lang/stopwords_hu.txt
#	home/src/main/resources/solr/conf/lang/stopwords_lv.txt
#	home/src/main/resources/solr/conf/lang/stopwords_ro.txt
#	home/src/main/resources/solr/conf/mapping-FoldToASCII.txt
#	home/src/main/resources/solr/conf/schema-old.xml
#	home/src/main/resources/solr/conf/schema.xml
#	home/src/main/resources/solr/conf/solrconfig-old.xml
#	home/src/main/resources/solr/conf/solrconfig.xml
#	home/src/main/resources/solr/conf/stopwords-name.txt
#	home/src/main/resources/solr/conf/velocity/VM_global_library.vm
#	home/src/main/resources/solr/conf/velocity/jquery.autocomplete.css
#	home/src/main/resources/solr/conf/velocity/jquery.autocomplete.js
#	home/src/main/resources/solr/conf/velocity/main.css
#	home/src/main/resources/solr/conf/velocity/query_group.vm
#	home/src/main/resources/solr/conf/velocity/query_spatial.vm
#	home/src/main/resources/solr/conf/velocity/richtext_doc.vm
#	home/src/main/resources/solr/conf/xslt/example.xsl
#	home/src/main/resources/solr/conf/xslt/example_atom.xsl
#	home/src/main/resources/solr/conf/xslt/example_rss.xsl
#	home/src/main/resources/solr/conf/xslt/luke.xsl
#	home/src/main/resources/solr/conf/xslt/updateXml.xsl
#	home/src/main/resources/solr/solr.xml
#	home/src/main/resources/solr/solr_newversion.xml
 2019-06-21 12:04:45 -05:00
Graham Triggs
f011af1339 Replace PR #99 (#125) 
* [VIVO-1656] Extension mechansim for passing properties to templates for Individuals

* [VIVO-1656] Extension mechansim for passing properties to templates for Individuals
 2019-06-07 13:01:39 -04:00
Andrew Woods
19a5d60c50 Extend wait time for connection to Solr 
Resolves: https://jira.duraspace.org/browse/VIVO-1612
 2019-05-15 09:40:02 -04:00
Graham Triggs
47ae42c019 Upgrade Jena to 3.11.0 (#119) 
Resolves: https://jira.duraspace.org/browse/VIVO-1693
 2019-05-07 15:54:31 -04:00
gneissone
bd6140a8cc Remove trailing whitespace throughout project 2019-05-03 12:50:05 -04:00
Andrew Woods
ab2b41260e Add ElasticSmokeTest 
Resolves: https://jira.duraspace.org/browse/VIVO-1600
 2019-04-03 12:18:55 -04:00
Andrew Woods
a5b2f0b373 [VIVO-1592] Upgrade Solr library to 7.4.0 (#82) 
* Upgrade Solr library to 7.4.0

Related to: https://jira.duraspace.org/browse/VIVO-1589

* Fix SolrSmokeTest : home page connection

Related to: https://jira.duraspace.org/browse/VIVO-1589
 2019-04-03 12:18:55 -04:00
Don Elsborg
40f78e58a8 initial files for ElasticSearch: ticket vivo-1587 (#85) 
* initial files from ticket vivo-1587
* Add https://mvnrepository.com/artifact/org.apache.httpcomponents/fluent-hc/4.5.6 dependency
* Resolves: https://jira.duraspace.org/browse/VIVO-1587
 2019-04-03 12:18:55 -04:00
alessandroGalasso
74b8f16aa2 [VIVO-1641] REPLACE jena afn with cross-platform regex (#105) 
Resolves https://jira.duraspace.org/browse/VIVO-1641
 2019-03-20 13:22:14 -04:00
Graham Triggs
12d703b4c8 [VIVO-1667] Language filtering for CONSTRUCT queries (#107) 
* Language filtering for CONSTRUCT queries
* Use an intermediate model for filtering if the destination is not empty

Resolves: https://jira.duraspace.org/browse/VIVO-1667
 2019-03-19 10:15:56 -04:00
Ben
1461f33f9f [VIVO-1674] Improve quality of thumbnails created (#112) 
* Explicitly set image quality and interpolation method
* Use twelvemonkeys plugin for thumbnail creation

Resolves: https://jira.duraspace.org/browse/VIVO-1674
 2019-02-13 12:04:57 -05:00
Graham Triggs
c3e8cc739b [VIVO-1668] Efficiency improvements in AboxRecomputer (#108) 
* Ensure we only use statements for the current individual in Recomputer
* Make AboxRecomputer more efficient when acquiring the list of individuals

Resolves: https://jira.duraspace.org/browse/VIVO-1668
 2019-02-12 09:40:02 -05:00
Stefan-Wolff
129e1219a8 [VIVO-1528] Select an editor for input fields based on annotation (#76) 
* provide WYSIWYG editor for range XMLLiteral only

* Update defaultDataPropertyForm.ftl

* add annotation based selection of the desired editor for editing values
of datatype properties in the frontend

* create new annotation vitro:editing to allow configuration of desired
editor for editing of related dataproperties

Resolves: https://jira.duraspace.org/browse/VIVO-1528
 2018-12-07 09:14:36 -05:00
alessandroGalasso
734b9ccf68 [VIVO-1649] fix for RDFServiceSparql.executeUpdate method (#97) 
Resolves: https://jira.duraspace.org/browse/VIVO-1649
 2018-12-05 19:52:40 -05:00
Svantje Lilienthal
554c5dec8b [VIVO-1639] Improve display of search results -- remove class names (#96) 
Resolves: https://jira.duraspace.org/browse/VIVO-1639
 2018-12-05 10:27:18 -05:00
Graham Triggs
42dacf1f16 [VIVO-1620] Improve AuthenticateTest performance (#93) 
* Improve test execution time

Resolves: https://jira.duraspace.org/browse/VIVO-1620
 2018-11-27 10:09:39 -05:00
Graham Triggs
a3cd382117 Multi-lingual support for menus (#91) 2018-11-13 08:51:27 -05:00