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3225 commits

Author SHA1 Message Date
hudajkhan
eea4681c60 Updates to DateTimeValueGenerator to allow it to be extended into subclasses for other predicates 2012-11-16 17:09:21 -05:00
j2blake
81b0b2c145 NIHVIVO-3940 remove the implementation of /individual/prefix/localname 
This has been broken since before release 1.3 and nobody has missed it.
 2012-11-15 14:28:22 -05:00
j2blake
4422fd07b9 NIHVIVO-4017 Get the Application Bean from the context WebappDaoFactory 
Since this was caught by a filter, the request is not likely to have
a WebappDaoFactory in it.
 2012-11-15 12:01:47 -05:00
j2blake
24a5784110 NIHVIVO-4017 Always get the ApplicationBean from the DAO. 
Don't store the ApplicationBean in the request or in the context, and
don't look for it there.
 2012-11-15 11:43:19 -05:00
j2blake
6b743f8b36 Remove intentional error - Jenkins has responded correctly. 2012-11-14 16:33:34 -05:00
j2blake
ccdd37b023 An intention compile-error to break the build 2012-11-14 16:10:54 -05:00
j2blake
e10274aaf7 NIHVIVO-4010 Log requests for invalid file-based URLs as INFO, not WARN. 
When a request comes in like /file/n1645/Ashdown_Susan_1.jpg, and either
there is no such entity, or it is not a FileBytestream, or its name is
different from requested, continue to serve the Missing Link image, but
log the error with an INFO message, not a WARN message.
 2012-11-14 11:25:17 -05:00
j2blake
b0a5961f4d Merge branch 'develop' of git+ssh://github.com/vivo-project/Vitro into develop 2012-11-09 13:24:46 -05:00
hudajkhan
60d9c23118 Updates to enable extensions of DateTimeInterval for Datastar temporal coverage support and adding ajax mechanism for modifying edit configuration 2012-11-08 16:54:31 -05:00
j2blake
fd3111dba1 Delete unused LoginTemplateHelper classes 
LoginTemplateHelper and LoginTemplateHelperBase have been succeeded by
LoginWidget, etc.
 2012-11-02 12:25:35 -04:00
hudajkhan
d192419f1c Update to enable multiple VClasses to be searched 
When searching for individuals beloging to institutional internal class,
the code was only retrieving the first Vclass Id when it needed to
retrieve both the internal class VClassId and the regular classId to
search for individuals that had both types.
 2012-10-31 15:46:15 -04:00
Brian Caruso
8f8e9762f8 Changes to Solr indexing building. 
Added method to SolrSetup to make IndividualToSolrDocument.
Changed ThumbnailImageURL to use RDFServiceFactory.
 2012-10-30 14:52:21 -04:00
hjkhjk54
47f37d4213 Including additional generator and field options that enable sorting individuals for an object property form by display rank annotations. 2012-10-26 20:25:43 +00:00
hjkhjk54
5973e7ec4d updates to vitro that enable field options to have custom comparators - this change is being implemented for Datastar but the code will be in Vitro to enable Vitro/VIVO to take advantage of these classes. New generator and field options classes have been added. 2012-10-24 21:19:40 +00:00
j2blake
6bbbe69f3c NIHVIVO-3996 If a database other than MySQL fails this test, inform them but don't call it a fatal error. 2012-10-18 16:10:20 +00:00
j2blake
4d33ac93c1 NIHVIVO-3996 Add a test to see whether the database is configured to use UTF-8. 2012-10-18 15:07:07 +00:00
j2blake
7d11a24191 NIHVIVO-3995 It is important that the default namespace end in "/individual/". Important enough that it becomes part of the startup smoke tests. 2012-10-17 19:09:38 +00:00
hjkhjk54
52314c4640 Updates for adding a data getter that executes a solr query to retrieve individuals for a specific vclass and returns the results - the default template is a copy of the individual list controller template - some code refactoring also breaks out some of the individual controller methods into solr query utils for potential further reuse. 2012-10-16 20:40:02 +00:00
j2blake
8c12deacec NIHVIVO-1054 Convert the Thread instances to VitroBackgroundThread instances, so we can track when the system becomes idle. 2012-10-15 19:26:43 +00:00
j2blake
b4796c649a NIHVIVO-3209 Create two controllers: one will show the status of all living instances of VitroBackgroundThread (for system monitoring); the other will wait until they are idle (for Selenium tests). 2012-10-15 19:23:05 +00:00
j2blake
e3db0778cb NIHVIVO-3940 If no NamespaceMapper is found in the ServletContext, log a warning message and return an empty string, instead of throwing an exception. 2012-10-08 20:20:20 +00:00
j2blake
f491a7c95c NIHVIVO-3988 Change the handling of multiple root user accounts, and remove the back-door login mechanism. 2012-10-08 16:46:31 +00:00
tworrall
72d2cafc2a merging 10098 to the trunk 2012-10-05 17:39:36 +00:00
brianjlowe
ec06bfd240 NIHVIVO-3978 chunking statement iteration to avoid OutOfMemoryErrors when recomputing inferences 2012-10-03 17:22:16 +00:00
brianjlowe
b7e2c71cc1 NIHVIVO-3978 reduction in memory use for clearing inference scratchpad and rebuild models 2012-10-01 20:08:28 +00:00
j2blake
e0a255c8b2 Merge from 1.5 branch: NIHVIVO-3977 Incorporate improvements in OpenSocial for 1.5.1. Also, make shinding_orng_tables.sql re-runnable. 2012-10-01 16:53:43 +00:00
brianjlowe
b9cd04f0fa NIHVIVO-3974 preventing reproduction of axioms with blank nodes in filegraphs and NIHVIVO-3958 applying query syntax leniency to RDFServiceSparql 2012-09-27 20:55:18 +00:00
brianjlowe
daf3018ed8 NIHVIVO-3972 preventing prefix collision in RDFUploadController 2012-09-26 20:04:35 +00:00
brianjlowe
d7605de8d2 NIHVIVO-3972 preventing prefix collision in RDFUploadController 2012-09-26 20:04:00 +00:00
brianjlowe
6314cd364d reduced memory use in getIndividualURIs() in ABox inference recomputation 2012-09-26 19:27:32 +00:00
j2blake
9cdffd0c09 Merge from 1.5 branch: NIHVIVO-3973 If the Solr index is not available, do not offer the user the ability to re-index. Show an error message instead. 2012-09-26 16:02:27 +00:00
brianjlowe
88e44af429 NIHVIVO-3971 setup of inference rebuild and scratchpad models; also bugfix to SimpleBridgingRule 2012-09-25 15:44:15 +00:00
hjkhjk54
0b3d14ebab Updates for enabling the association of sparql queries with OWL classes and allowing the individual response builder to retrieve data (using data getters) and make that data available to the templates. Additionally, I'm adding a new data post processor that allows 'duplicate' results (or results with the same object uri for the main subject uri) to be returned - this relates to work being done by Frances for Vitro. This post processor will need to be explicitly included for it to be used. 2012-09-24 16:14:51 +00:00
brianjlowe
4f7e6d0ee4 fixes ConcurrentModificationException in SimpleBridgingRule 2012-09-21 20:04:22 +00:00
briancaruso
217cb13019 Adding license comment 2012-09-21 19:25:33 +00:00
briancaruso
367225de91 Merge from 1.5-maint 2012-09-21 18:28:21 +00:00
briancaruso
fddf1d2af9 Changed IndexBuilder to use a Set instead of a Queue for changed statements, NIHVIVO-3969. 
Changed SearchReindexingListener to copy statements so they are not associated to any Model, NIHVIVO-3969.
 2012-09-21 18:25:28 +00:00
briancaruso
b005179a0b Adding a RDFService that does not check query syntax 2012-09-21 18:22:09 +00:00
brianjlowe
61ede29fa7 NIHVIVO-3967 retraction of inferences by SimpleBridgingRule in batch mode and NIHVIVO-3955 batch mode retraction performance improvments for SimpleReasoner 2012-09-21 16:34:27 +00:00
tworrall
fb483663bf merging r10056 to the trunk 2012-09-19 15:25:42 +00:00
brianjlowe
950be11440 NIHVIVO-3961 fixes bug with premature connection closing during URI refactoring 2012-09-14 18:13:02 +00:00
brianjlowe
cf7f25af3b NIHVIVO-3957 fixes exceptions when attempting to edit or delete individuals using the backend editor 2012-09-13 15:32:06 +00:00
brianjlowe
2c83351eb6 NIHVIVO-3956 SPARQL-based implementations of getMostSpecificTypeURIs() getDataValue() and isVClass() to shorten render time of short views 2012-09-12 20:03:21 +00:00
brianjlowe
b90d1ebefe NIHVIVO-3946 fixes incorrect listing of individuals asserted to be in class 2012-09-10 20:11:37 +00:00
tworrall
c3ebf8eb49 merging r10046 to the trunk 2012-09-10 17:38:46 +00:00
stellamit
4bb5d83e17 merging NIHVIVO-3935 from the 1.5 branch to the trunk 2012-09-08 17:15:38 +00:00
j2blake
0a72583712 Merge from 1.5 branch: NIHVIVO-3954 Add OpenSocial bug fixes from Eric Meeks: make compound key in app_registry table, show sandbox login, ensure that randomly assigned Gadget ID is not negative, modify JS to find out whose page we are on. 2012-09-07 15:41:57 +00:00
brianjlowe
07b73bbc22 license tag for RDFServiceFactorySDB 2012-09-06 20:02:14 +00:00
tworrall
71d5fb7f76 merging r10037 to the trunk 2012-09-06 19:40:47 +00:00
brianjlowe
4fde9b8166 NIHVIVO-3951 performance improvements for SPARQL with OPTIONAL on query page and NIHVIVO-3953 support for older SPARQL and ARQ syntaxes 2012-09-06 18:44:45 +00:00