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Author SHA1 Message Date
Jim Blake
58148630ad VIVO-823 Replace RDFServiceSetup with RDFSetup 
This introduces the RDFSource as a wrapper around an RDFServiceFactory and 2 ModelMakerFactorys.
This introduces ModelMakerUtils as a way to get the ModelMakers for context or for request.
Create implementations of RDFSource for SDB, TDB, and SPARQL.
The SDB implementation absorbs JenaPersistentDataSourceSetup and part of ConfigurationPropertiesSmokeTests,
which aren't needed unless we use SDB.

This is probably broken, without the subsequent changes.
 2014-07-18 17:15:24 -04:00
Jim Blake
63ed82cef9 VIVO-823 Create some tests for the VitroModelFactory 
Make changes as determined by the tests, to BulkUpdatingOntModel as well.
Add debug statements to ModelSynchronizer.
 2014-07-18 17:04:58 -04:00
Jim Blake
04f763109e VIVO-823 Create several ModelMaker decorators, with tests 2014-07-18 17:02:21 -04:00
Jim Blake
553bd417f7 VIVO-730 SparqlUpdatePage is no longer used. 2014-07-18 16:54:20 -04:00
Jim Blake
8115aebc1f Fix this warning message. 2014-07-18 10:51:31 -04:00
Jim Blake
1343a762e8 Add license tag. 2014-07-17 11:17:42 -04:00
hudajkhan
72fbcedcba updates for returning array of most specific types and incorporating that check in removeConceptSubclasses in the client-side code VIVO-826 2014-07-10 12:37:16 -04:00
Jim Blake
8591894262 GuardAgainstUnmigratedRDB should behave well if the database driver is not found. 2014-07-10 10:30:09 -04:00
Jim Blake
bd06c0cfbe VIVO-824 Fix the hanging RDB migration tool. 
If fork=yes is specified when running within Ant, the forked JVM is not connected to standard input.
 2014-07-08 13:20:57 -04:00
Jim Blake
b2c3ebca42 Copy build.properties correctly into WEB-INF/resources. 
Users may override with ant -Dbuild.properties.file=my.silly.name, but when it gets copied into WEB-INF/resources, it must be called build.properties
 2014-07-08 12:19:13 -04:00
brianjlowe
d65cc2b106 adding some unit tests to JenaIngestUtils 2014-06-27 16:44:14 -04:00
Jim Blake
1baf710499 Merge branch 'maint-rel-1.7' into develop 2014-06-27 14:31:36 -04:00
Jim Blake
466e295c79 VIVO-811 adjust the values of the mime-type radio buttons. 2014-06-27 14:31:19 -04:00
Jim Blake
e61b82ae85 Merge branch 'maint-rel-1.7' into develop 
Conflicts:
	webapp/src/edu/cornell/mannlib/vitro/webapp/rdfservice/adapters/SpecialBulkUpdatingGraph.java
 2014-06-23 14:42:45 -04:00
Jim Blake
30506fa8b7 VIVO-806 Remove deprecation warnings. 2014-06-23 14:41:13 -04:00
Tim Worrall
b572e3f474 VIVO-805: fix i18n parameter issue on password length string 2014-06-23 10:56:19 -04:00
Tim Worrall
c0b7e96f27 VIVO-804: fix ordering of property groups 2014-06-23 10:55:52 -04:00
Tim Worrall
638699f08e VIVO-804: fix ordering of property groups 2014-06-23 10:53:50 -04:00
Tim Worrall
8510505424 VIVO-805: fix i18n parameter issue on password length string 2014-06-23 09:42:00 -04:00
Jim Blake
c53dd9ea70 Refactorings to improve RDFService and Models setups. 
Create ModelNames, and centralize all of the references to model names there.
Separate JenaPersistentDataSourceSetup from JenaDataSourceSetupBase. Refactor.
Remove SpecialBulkUpdatingGraph. - not used
 2014-06-20 15:20:31 -04:00
Tim Worrall
59ddbe15ec there were duplicate freemarker variables being used; resolved this by changing the name of the variable used for the application or site name 2014-06-20 13:08:55 -04:00
Jim Blake
90cec22e9d Merge branch 'maint-rel-1.7' into develop 2014-06-19 11:11:56 -04:00
Jim Blake
f690bf0235 VIVO-801 Bug fix: user a consistent spelling for tdbModels directory. 2014-06-19 11:11:18 -04:00
Jim Blake
114cf33af9 Merge branch 'maint-rel-1.7' into develop 2014-06-18 17:41:56 -04:00
Jim Blake
baf0d59a68 VIVO-799 Add setRdfsLabel() to unit test class. 2014-06-18 17:41:38 -04:00
Jim Blake
fb49d4b4cd Merge branch 'maint-rel-1.7' into develop 2014-06-18 17:34:51 -04:00
Jim Blake
10461fb16d VIVO-801 Move RDB migrator from VIVO to Vitro 
Older instances of Vitro might want to use it.
 2014-06-18 17:33:57 -04:00
Tim Worrall
667f89bb2d VIVO-799: only display individuals with rdfs labels in custom form picklists 2014-06-18 14:26:46 -04:00
Tim Worrall
6ddb6336ca Merge branch 'maint-rel-1.7' of https://github.com/vivo-project/Vitro into maint-rel-1.7 2014-06-18 14:24:44 -04:00
Tim Worrall
8fc32d28ed VIVO-799: only display individuals with rdfs labels in custom form picklists 2014-06-18 14:24:32 -04:00
Jim Blake
7e514f3cfd VIVO-797 Handle both types of file size exceptions. 
Could be either FileSizeLimitExceededException or SizeLimitExceededException.
 2014-06-17 12:05:52 -04:00
Jim Blake
b6ac3fcd16 Update the user accounts data used for Selenium tests. 2014-06-17 12:00:28 -04:00
Jim Blake
a086957046 Fix licensing issues. 2014-06-14 11:32:48 -04:00
Jim Blake
3e72fda9a6 VIVO-668 Increase the timeout interval when waiting for the search index. 2014-06-14 11:05:32 -04:00
Jim Blake
4edd490fbb Improve thread safety. 
Also, correct a spelling error.
 2014-06-14 11:04:18 -04:00
Jim Blake
338dd6344a VIVO-773 create BulkUpdatingModel and OntModel as decorators. 
Clean up the code, and no need to copy from Jena source files.
 2014-06-13 16:07:56 -04:00
Jim Blake
ecbee098cb VIVO-784 remove duplicate results from "show statements". 
The clause to include statements in the default graph was showing everything twice, without filtering the statements in the named graph. Don't know why. Talked with Brian, and decided to remove it.
 2014-06-13 11:15:27 -04:00
Jim Blake
ea9d1e739d VIVO 746, at startup, remove obsolete Permissions from the user accounts model. 
Also, get rid of UpdatePermissionSetUris, which supported the transition from 1.4 to 1.5.
 2014-06-13 10:27:25 -04:00
Jim Blake
81733d305d VIVO-773 Add a Context to RDFServiceDatasetGraph. 
Every attempt at SPARQL Update fails because RDFServiceDatasetGraph.getContext() returns null.
I see that DatasetGraphBase just creates an empty Context on instantiation, so now RDFServiceDatasetGraph
does the same, and the problem goes away.
 2014-06-13 10:24:21 -04:00
Jim Blake
1fec2825d1 Merge branch 'develop' of git+ssh://github.com/vivo-project/Vitro into develop 2014-06-13 10:22:14 -04:00
brianjlowe
d7f1c88ce9 speeding up raw statements display by removing labels 2014-06-12 16:32:51 -04:00
Jim Blake
c1e4b36cf2 VIVO-773 remove references to IRI-0.8 library. 
Converted to 0.9.6
 2014-06-12 16:16:41 -04:00
Tim Worrall
4bbbf6fd6e update template to include new password length string 2014-06-12 12:57:50 -04:00
Jim Blake
efcc677d96 Document the improvements to the developer panel 2014-06-11 17:50:47 -04:00
Jim Blake
66fbf81034 Merge commit 'a83c1e5e4fac33e8c09f964b7313ec53de8946fc' into feature/TDBfromRDB2 2014-06-11 16:50:58 -04:00
brianjlowe
a83c1e5e4f fix to KnowledgeBaseUpdater's avoidance of triggering unnecessary recomputes 2014-06-11 15:41:14 -04:00
brianjlowe
cfada56e31 change to prevent foreground recompute when only annotations are updated 2014-06-11 15:36:35 -04:00
Jim Blake
7cf03661d4 VIVO-773 guard against RDB data that has not been migrated. 2014-06-09 15:37:54 -04:00
Jim Blake
ae6a2a7251 VIVO-719 Improve the user interface 2014-06-09 15:14:16 -04:00
Tim Worrall
f8616d4c85 VIVO-649: allow property groups to contain forward slashes 2014-06-09 11:15:55 -04:00