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3301 commits

Author SHA1 Message Date
j2blake
4f29ab6f5f VIVO-706 add a ObjectProperty declaration for "conceptAssociatedWith" 2014-03-12 13:16:25 -04:00
j2blake
83dd4a57e7 VIVO-705 Trim ontology URI before using. Check for URISyntaxException before using. 2014-03-12 12:46:54 -04:00
j2blake
2536b86972 Merge branch 'maint-rel-1.6' into develop 2014-03-11 16:07:39 -04:00
j2blake
63140fa91b VIVO-682 Fix display of self-editor level properties 
Can't test for authorization of a DataProperty or an ObjectProperty, because the self-editor policies need to know who the subject is.
Need to create a DataPropertyStatement or ObjectPropertyStatement with the subjectUri and test that instead.
 2014-03-11 16:02:35 -04:00
j2blake
3e15baee6e Merge branch 'maint-rel-1.6' into develop 2014-03-11 14:46:18 -04:00
j2blake
7b0ad5ec12 VIVO-689 better selection of Locales 
If there are selectable Locales, and one has been selected, then only that Locale is preferred. The browser preferences are discarded.
If there are selectable Locales, and none has been selected, then act as if the first one has been selected.
 2014-03-11 14:42:45 -04:00
j2blake
50e55b62ef Merge branch 'maint-rel-1.6' into develop 2014-03-10 18:15:16 -04:00
j2blake
fdeee35bb4 VIVO-692 Restrict LOD by Publish level, not by Display level 
Create a new annotation for properties and classes, HiddenFromPublishBelowRoleLevelAnnot.
Provide the means to initialize these annotations, edit them, and display them in the verbose property display.
Create a Permission and some requested actions so the policies can decide which statements must be filtered out, based on the user's role.
Add unit tests and improve acceptance tests
 2014-03-10 18:14:02 -04:00
j2blake
d932f851e9 Convert from HttpClient 3.1 to HttpClient 4.3 2014-03-05 18:32:36 -05:00
j2blake
48c679babc Make PermissionRegistry mutable, so other startup modules may add permissions. 2014-02-27 12:15:28 -05:00
j2blake
1d7812ed28 First cut of Orcid Integration is working 2014-02-26 14:58:18 -05:00
j2blake
fb63559aa6 Merge branch 'maint-rel-1.6' into develop 2014-01-15 16:43:59 -05:00
j2blake
95538e4c8a VIVO-230 Make the log messages more explicit, so we have a chance of diagnosing this. 2014-01-15 16:43:40 -05:00
j2blake
69ad4907e7 Merge branch 'maint-rel-1.6' into develop 2014-01-15 15:29:27 -05:00
j2blake
73f7604920 VIVO-673 Log throwables and re-throw them. 
If a startup module throws an error, StartupManager will catch it only long enough to write it to the log, and then re-throw it.
 2014-01-15 15:29:08 -05:00
j2blake
07de4c6163 Merge branch 'maint-rel-1.6' into develop 2014-01-15 15:17:23 -05:00
j2blake
2f68ddb8ee VIVO-672 Preserve the lazy initialization of the VClassJena. 
Instead of a copy constructor on VClass, use a copy() method, which can be overridden.
 2014-01-15 15:16:17 -05:00
j2blake
416f142526 Merge branch 'maint-rel-1.6' into develop 2014-01-09 18:25:32 -05:00
j2blake
0280cda8e3 VIVO-662 Remove duplicate rows from the SPARQL query results. 
Two rows are considered to be duplicates if they have the same authorshipURI or the same authorURI.
 2014-01-09 17:33:25 -05:00
j2blake
54509b1aee VIVO-660 Add an Authorization tabs to the developer panel 2014-01-07 15:08:30 -05:00
j2blake
245763e9e7 Make DeveloperSettings a singleton, and other improvements. 
By making it a singleton, we do need an explicit Setup operation. However, it means that we can refer to the settings in client code that doesn’t have access to a request or to the ServletContext.

Other refactorings to simplify the logic or make it more scalable.
 2014-01-04 14:22:29 -05:00
j2blake
f6bd5804d5 VIVO-224 Change USE_MISCELLANEOUS_EDITOR_PAGES to USE_INDIVIDUAL_CONTROL_PANEL 
It’s hardly miscellaneous if there’s only one page.
 2014-01-03 15:40:52 -05:00
j2blake
03dfbfc2c5 VIVO-224 Get rid of REBUILD_VCLASS_GROUP_CACHE. 
Since we build the cache from Solr, we no longer provide the option to rebuild it.
 2014-01-03 15:26:33 -05:00
j2blake
3c59098525 VIVO-224 Get rid of MANAGE_TABS permission 
It was not used, probably since we no longer have tabs.
 2014-01-03 12:44:54 -05:00
j2blake
004427855b VIVO-224 Get rid of MANAGE_PORTALS permission 
It was only used in editing the application bean, and was equivalent to EDIT_SITE_INFORMATION.
 2014-01-03 12:41:37 -05:00
j2blake
c42d9af70f VIVO-617 Adjust the client code to use the new file upload tools. 2013-12-20 17:11:16 -05:00
j2blake
b7b28cc896 VIVO-617 Change the way we deal with Multipart requests. 2013-12-20 17:10:18 -05:00
hudajkhan
8a490c6125 vivo 638 fixing query for existing interval value to utilize variable for object so editing works correctly 2013-12-10 15:41:45 -05:00
j2blake
46b9340655 VIVO-581 Avoid Files.isReadable() — it runs slowly on some Windows machines. 2013-12-10 15:09:56 -05:00
j2blake
d4443fe601 VIVO-581 Restrict access, and don’t give out the DB password. 2013-12-10 14:59:30 -05:00
tworrall
0c79185254 VIVO-637 date time generator changes for various date time properties 2013-12-10 12:44:04 -05:00
j2blake
0a00aee684 VIVO-581 Add a smoke test for Java version 2013-12-10 12:08:43 -05:00
j2blake
03750cd669 VIVO-581 Add a diagnostic page 2013-12-10 11:37:47 -05:00
hudajkhan
566119f510 VIVO 625 updating method to enable range uri from possible property to be used instead of blank node broken in populated property so correct range class uri is used 2013-12-10 11:25:22 -05:00
tworrall
772cde59e5 additional datetimeinterval validation tweaking 2013-12-09 16:59:03 -05:00
tworrall
4e216e9360 related to VIVO-628, there was no validation on the datetimeinterval form when no years are specified 2013-12-09 16:18:02 -05:00
hudajkhan
b0c0c71cdb if range uri is null, error message for null rangeVClass should not be thrown 2013-12-06 16:44:47 -05:00
hudajkhan
3aca74a7ee VIVO610 when range uri exists but doesn't have corresponding vclass, show error message with option to go back to individual profile 2013-12-06 11:08:14 -05:00
j2blake
d08c3f61ff VIVO-618 Revise SearchService to parse uploaded files correctly and to respond properly to authentication errors. 2013-12-05 16:36:26 -05:00
brianjlowe
89d4fc9228 union domains on data property pages 2013-12-05 16:06:42 -05:00
brianjlowe
8ab6d229a6 VIVO-623 unión domains and ranges on object property displays 2013-12-05 14:57:31 -05:00
brianjlowe
d2792db057 VIVO-614 faster model reconciliation in ABoxRecomputer 2013-12-04 16:32:01 -05:00
hudajkhan
95d7f28259 vivo610 when rangeUri empty ensure error does not occur for adding new object of type 2013-12-04 11:46:44 -05:00
hudajkhan
1abbdfc86d vivo-608 only display classes that are part of classgroup in type dropdown 2013-12-03 13:39:53 -05:00
brianjlowe
eebbaba3ca VIVO-604 getting rid of ExternalIdRetryController 2013-12-02 16:23:10 -05:00
brianjlowe
495982ddab fixes bug that caused misrendering of certain restrictions on vclass edit page 2013-12-02 15:38:37 -05:00
j2blake
356e86de70 VIVO-581 Don’t check for “regular files”, just check for “not directory”. 2013-12-01 19:32:43 -05:00
j2blake
f981fd2c53 VIVO-588 Fixed a typo to fix the deadlocked threads. 2013-12-01 19:30:57 -05:00
j2blake
60102fbf28 VIVO-530 Adjust SPARQL Update API 2013-11-26 16:02:52 -05:00
j2blake
27c8d4410e VIVO-530 Fix logic bug in authorization 
Required actions from the DataGetters were being ignored.
 2013-11-26 10:22:37 -05:00