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3740 commits

Author SHA1 Message Date
Tim Worrall
9f21c8c976 Update level on ARG_0000028 faux properties was not working correctly due to a bug in the edit link macro. 2016-04-29 13:01:35 -04:00
Graham Triggs
9ff3dd5e11 [VIVO-1226] bug fix for search help back link 2016-01-21 15:55:49 +00:00
Ted Lawless
11d8a91469 Move yasqe js to required location. 2016-01-06 14:20:43 -05:00
Graham Triggs
8b1919e69b Merge branch 'feature/yasqe' of https://github.com/lawlesst/Vitro into lawlesst-feature/yasqe 2015-12-02 15:05:00 +00:00
Graham Triggs
a3b238f870 Merge branch 'browse-columns' of https://github.com/gneissone/Vitro into gneissone-browse-columns 2015-12-02 14:08:16 +00:00
Graham Triggs
e1ff94ccaf Maven migration (first draft) 2015-11-19 23:47:12 +00:00
Graham Triggs
3157b0941c Fix to regular expression replacement 2015-11-09 18:41:57 +00:00
Graham Triggs
dd76bb73a4 Faster Graph query for sprawl interface; add caching as it is still quite slow 2015-11-06 11:15:39 +00:00
grahamtriggs
15bc18b69a Allow SPRAQL endpoint to have credentials on read as well as write; update Virtuoso normalisation of types 2015-11-04 11:03:07 +00:00
grahamtriggs
817e90716c [VIVO-1122] Fix to the way resources are consumed in the SPARQL clients, so that it doesn't leak / tie up HTTP connections. 2015-11-03 01:19:38 +00:00
grahamtriggs
046d445639 Enable new visualisations by default 2015-11-02 18:32:26 +00:00
grahamtriggs
6a4dfbb43f [VIVO-1031] Faster list filtering (for large lists) 2015-11-02 10:29:54 +00:00
grahamtriggs
c8818932a4 [VIVO-1031] Minor cleanup 2015-10-31 22:19:27 +00:00
grahamtriggs
a5084a614c Remove last use of graph wrapper from reinferencer 2015-10-31 19:01:51 +00:00
grahamtriggs
25874449dd Replace the other instance where the reinferencer was going through a serialisation that could easily be a direct write into a model. 2015-10-31 14:41:56 +00:00
grahamtriggs
1832bba831 [VIVO-1031] Minor improvements to remove RDFServiceGraph usage from reinferencer. 2015-10-31 14:13:44 +00:00
grahamtriggs
5d6f4dada7 [VIVO-1031] Small caching layer in the ABoxRecomputer to reduce overhead of continually querying for the same type information. 2015-10-31 12:46:45 +00:00
grahamtriggs
3bff514d97 Remove redundant stream object 2015-10-30 16:20:29 +00:00
grahamtriggs
c0f482344d [VIVO-1068] Hide SPARQL Query Builder 2015-10-23 16:30:33 +01:00
grahamtriggs
efd431a332 Minor code cleanup 2015-10-23 15:26:18 +01:00
grahamtriggs
31898440f3 [VIVO-1115] Pass properties from the config to enable AltMetric badges 2015-10-22 15:27:05 +01:00
grahamtriggs
acae9bbf94 [VIVO-1079] Fix debugging problem when not using constructed models 2015-10-20 10:40:55 +01:00
grahamtriggs
34d78a9463 [VIVO-1031] Use consumer interface for most ResultSets 2015-10-19 17:16:09 +01:00
grahamtriggs
39b0d2e6bd [VIVO-1031] Add methods to process construct / select queries without buffering / translating through streams. 2015-10-17 22:03:12 +01:00
grahamtriggs
db0bb6a5e6 [VIVO-1031] Always execute SDB queries against the dataset and not the default model 2015-10-15 22:58:48 +01:00
grahamtriggs
83404c2c80 [VIVO-1075] Get Literal and Integer from count RDFNode rather than a toString/parseInt which fails if there is a type present. 2015-10-14 07:54:48 +01:00
grahamtriggs
2f6489610c [VIVO-1031] Rework the resolve faux properties method so that it is much faster for logged in users. 2015-10-14 07:43:40 +01:00
grahamtriggs
f37f115160 [VIVO-1031] HTML sanitisation is slow - for now, replace AntiSamy with simple RegEx of JavaScript patterns for significant boost. Will add full sanitisation to the input later. 2015-10-09 10:34:23 +01:00
grahamtriggs
b64b87ee1a Fix incorrect parameter order 2015-10-06 11:38:51 +01:00
grahamtriggs
7fbaf1cadc Pause counting to avoid problems of overlapping pause / unpauses, add event to notify of the intention to rebuild the index, so that overhead of tracking unnecessary indexing can be reduced 2015-10-03 08:44:26 +01:00
grahamtriggs
656488b958 [VIVO-1031] Shave off 2/3rds of time required to check if any triples exist by using Jena API instead of SPARQL ASK 2015-09-29 21:59:01 +01:00
grahamtriggs
15cd6a8ac0 [VIVO-1031] Improve logged in performance by handling a bulk of faux properties statements at once, rather than one-by-one. 2015-09-29 17:02:50 +01:00
grahamtriggs
4883621236 [VIVO-1059] Improve bind parameter method in SparqlQueryDataGetter so that variables with a common root are bound correctly - e.g. binding ?individual won't match ?individualURI 
(Does not use full set of allowed Sparql characters, but should catch all commonly used cases)
 2015-09-25 22:16:41 +01:00
Tim Worrall
937a3abca5 No Jira issue. When a person has no webpages, the group_concat in the query resulted in a non-empty result set: one that had no values but was nonetheless not empty. Added a check to see if the node was null. 2015-08-25 10:56:59 -04:00
Stephan Zednik
5ed701be79 simplified getConfigFromSession logic with ternary operator 2015-08-17 00:05:49 -06:00
Tim Worrall
3fdc17d16d No Jira issue. Add tooltips to object property labels by pulling in the public description of th eproperty. 2015-07-10 12:21:14 -04:00
Jim Blake
f993cf85ab Guard against accidental blanks in developer.properties 2015-06-09 11:36:15 -04:00
hudajkhan
5db470d307 VIVO-1032 retrieve whether or not property is a faux property 2015-05-26 19:58:31 -04:00
Jim Blake
2058fbf2a6 VIVO-1026 Back off to an older version of HttpClient 
OWLAPI 4.0.1 uses HttpClient 4.2.5, and we were getting a class-version conflict in some contexts.
 2015-05-03 17:38:38 -04:00
Jim Blake
0b79dfdf01 VIVO-1025 Improvements to the Virtuoso driver. 2015-04-27 14:45:14 -04:00
Jim Blake
c7979c05a7 VIVO-1018 RiotReader.createIteratorTriples() assumes an ASCII stream, so we need a different method. 2015-04-22 15:34:06 -04:00
Jim Blake
c623e32cff VIVO-1017 Fix stupid mistake from VIVO-1015 
When the variables were given meaningful names, it became obvious that I was checking
the wrong one to see whether it was a faux property.
 2015-04-15 11:13:27 -04:00
Jim Blake
c8eca40385 VIVO-1015 fix the redundancy check for restricted properties. 
Now that we have faux properties, we consider two object properties to be different if they have different ranges.
However, an object property with a restriction appears to have a different range from its base property, but is
considered to be the same property. Fix this.
 2015-04-13 16:25:25 -04:00
Jim Blake
dc726d2600 VIVO-1016 Avoid crashing on ABox.isEmpty() 
1) Don't ask whether the ABox is empty, if you don't need to
2) If you must ask, ask the graph of the base model, to avoid SDB layers
3) change contains() to use SELECT instead of ASK, because SDB implements ASK very poorly.
 2015-04-13 10:25:58 -04:00
Tim Worrall
d8aaecd4fd No Jira issue. Fixed a null pointer exception when I data property has no rangeDatatypeUri. 2015-04-08 16:15:59 -04:00
Tim Worrall
0c5d69e25e Related to VIVO-921. Server-side validation for default data property form. 2015-04-07 14:00:30 -04:00
Tim Worrall
a32ee20a40 VIVO-921: some additional validation work as well as dislaying an indicator when a data property has been ingested in an invalid format. 2015-04-06 14:48:05 -04:00
Jim Blake
ced99d7703 Improve some error handling to clean up the catalina log. 2015-04-02 17:05:47 -04:00
Jim Blake
6aa29378e5 No Jira issue. Print a better message when a SPARQL Query won't parse. 2015-04-01 18:07:07 -04:00
Tim Worrall
c47964fbde VIVO-921: widget-ized the data property form. Dates, ints, integers, floats, uris and booleans no longer use tinyMCE. 2015-04-01 12:48:15 -04:00