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187 commits

Author SHA1 Message Date
Graham Triggs
47ae42c019 Upgrade Jena to 3.11.0 (#119) 
Resolves: https://jira.duraspace.org/browse/VIVO-1693
 2019-05-07 15:54:31 -04:00
gneissone
bd6140a8cc Remove trailing whitespace throughout project 2019-05-03 12:50:05 -04:00
alessandroGalasso
74b8f16aa2 [VIVO-1641] REPLACE jena afn with cross-platform regex (#105) 
Resolves https://jira.duraspace.org/browse/VIVO-1641
 2019-03-20 13:22:14 -04:00
Graham Triggs
12d703b4c8 [VIVO-1667] Language filtering for CONSTRUCT queries (#107) 
* Language filtering for CONSTRUCT queries
* Use an intermediate model for filtering if the destination is not empty

Resolves: https://jira.duraspace.org/browse/VIVO-1667
 2019-03-19 10:15:56 -04:00
Ben
1461f33f9f [VIVO-1674] Improve quality of thumbnails created (#112) 
* Explicitly set image quality and interpolation method
* Use twelvemonkeys plugin for thumbnail creation

Resolves: https://jira.duraspace.org/browse/VIVO-1674
 2019-02-13 12:04:57 -05:00
Graham Triggs
c3e8cc739b [VIVO-1668] Efficiency improvements in AboxRecomputer (#108) 
* Ensure we only use statements for the current individual in Recomputer
* Make AboxRecomputer more efficient when acquiring the list of individuals

Resolves: https://jira.duraspace.org/browse/VIVO-1668
 2019-02-12 09:40:02 -05:00
Stefan-Wolff
129e1219a8 [VIVO-1528] Select an editor for input fields based on annotation (#76) 
* provide WYSIWYG editor for range XMLLiteral only

* Update defaultDataPropertyForm.ftl

* add annotation based selection of the desired editor for editing values
of datatype properties in the frontend

* create new annotation vitro:editing to allow configuration of desired
editor for editing of related dataproperties

Resolves: https://jira.duraspace.org/browse/VIVO-1528
 2018-12-07 09:14:36 -05:00
alessandroGalasso
734b9ccf68 [VIVO-1649] fix for RDFServiceSparql.executeUpdate method (#97) 
Resolves: https://jira.duraspace.org/browse/VIVO-1649
 2018-12-05 19:52:40 -05:00
Svantje Lilienthal
554c5dec8b [VIVO-1639] Improve display of search results -- remove class names (#96) 
Resolves: https://jira.duraspace.org/browse/VIVO-1639
 2018-12-05 10:27:18 -05:00
Graham Triggs
42dacf1f16 [VIVO-1620] Improve AuthenticateTest performance (#93) 
* Improve test execution time

Resolves: https://jira.duraspace.org/browse/VIVO-1620
 2018-11-27 10:09:39 -05:00
Graham Triggs
a3cd382117 Multi-lingual support for menus (#91) 2018-11-13 08:51:27 -05:00
Graham Triggs
fe00198dd5 [VIVO-1613] Fix menu ordering bug (#90) 
Resolves https://jira.duraspace.org/browse/VIVO-1613
 2018-10-29 10:57:15 -06:00
Graham Triggs
dc74a5264f [VIVO-1608] Fix node removal from the XML so that it works with an XML tree of arbitrary depth (#89) 
Resolves: https://jira.duraspace.org/browse/VIVO-1608
 2018-10-16 09:42:25 -04:00
Ben
5ca7a9235f Add check for language files to smoke tests and remove references to … (#74) 
* Add check for language files to smoke tests and remove references to build.properties

* Catch IOException more goodly

* Make languages.selectableLocales optional, fix default value for RDFService.languageFilter
 2018-09-24 14:36:35 -04:00
Graham Triggs
b049aa6d32 Moved stream reset inside loop so that every listener gets the same state (#79) 2018-08-06 10:29:37 -04:00
vivo-uab
f2656ba3d8 [maven-scm-plugin] prepare development vitro-1.11.0-SNAPSHOT 2018-07-09 17:17:08 -04:00
vivo-uab
2c3c97be5e [maven-scm-plugin] prepare release vitro-1.10.0 2018-07-09 17:17:08 -04:00
Mike Conlon
111c0a8ee5
Merge pull request #73 from Asimq/develop 
Moved password encryption from MD5 to a salted and secure hash - 1448
 2018-05-23 13:49:04 -04:00
AsimA
df58f2d18c remvoed the unused import 2018-05-23 11:28:35 +02:00
AsimA
fea33a456a Fixed the user experience 2018-05-23 11:25:58 +02:00
AsimA
fcaf315549 added smokeTests for argon2 parameters 2018-05-22 15:55:00 +02:00
AsimA
1e231013b0 Updated the tests to store argon2 as well as md5password 2018-05-22 14:57:42 +02:00
AsimA
96388c0951 Removed the overloaded Argon2Encoding methods in Authenticator and moved the Argon2StubEncoding method to AuthenticatorStub 2018-05-22 13:41:26 +02:00
AsimA
aeb9754500 Fixed the styling 2018-05-18 16:40:08 +02:00
Asim
a8d5020ede updated the snapshot versions to 1.10.0 2018-05-17 11:16:03 +02:00
Asim
752f9d1229 Fixed the tests 2018-05-09 13:51:11 +02:00
Ben
c9ce576f6b [VIVO-1488] Look in vitro.home/config directory for runtime.properties at startup (#63) 
* Look in vitro.home/config directory for runtime.properties at startup

* Show deprecation warning on startup if runtime.properties in vivo.home

* Reuse string variable, use .equals()
 2018-05-07 10:21:03 -04:00
Jim Blake
b406f99fec VIVO-1478 mysql driver throws exception (#69) 
* VIVO-1478 Add time zone to the MySQL URL, to avoid an InvalidConnectionAttributeOption. 
* Go with proven driver version, rather than the most recent.
 2018-05-04 08:44:43 -06:00
Ben
efe8f265dc Upgrade to Jena 3.6.0 (#67) 
Resolves: https://jira.duraspace.org/browse/VIVO-1458
 2018-05-03 10:26:06 -04:00
Andrew Woods
80625e3b4c Change project version from 2.0.0-SNAPSHOT to 1.10.0-SNAPSHOT 
Resolves: https://jira.duraspace.org/browse/VIVO-1479
 2018-04-24 17:09:02 -04:00
Jim Blake
7f8b16bc1b VIVO-1408 Allow the use of a #-terminated prefix on JAVA class URIs 2018-01-08 11:19:53 -05:00
Jim Blake
8fbfc6d4ff ConfigurationBeanLoader will ignore unexpected properties on instances. 
If no method has been annotated to accept that property, don't complain,
don't throw an exception, just continue.
 2018-01-06 14:09:03 -05:00
Jim Blake
9e3ac4fb54 Remove implicit call to deprecated constructor. 2018-01-05 09:50:42 -05:00
Jim Blake
b00633326e VIVO-1405 Add pseudo-version to requests for scripts and stylesheets. 
The result is that the user does not need to refresh the browser cache when a new version of VIVO is deployed on the server.
 2017-12-01 11:41:04 -05:00
Graham Triggs
0e15b9a69a [VIVO-1404] Disable XSS protection on the SPARQL query page 2017-11-10 12:01:23 -05:00
Graham Triggs
f4c9d23af0 Fix NPE when no ontology URI is specified 2017-11-10 10:00:17 -05:00
Graham Triggs
41be1c22f4 Fix building on JDK 9 2017-10-23 19:24:32 +01:00
Steve McKay
00f7b95266 [VIVO-1315] Enable Plum print by default (#61) 
* [VIVO-1315] Plum print integration

* VIVO-1315 default Plum print to enabled
 2017-10-21 20:20:32 +01:00
Graham Triggs
e0b723354d Update project version numbers 2017-10-20 15:02:14 +01:00
Graham Triggs
95e336d862 List view improvements for Vitro 2017-10-19 11:21:37 +01:00
Graham Triggs
0ef3018ae3 [VIVO-1403] Improve update performance by ensuring the bulk updater can be exposed correctly 2017-10-19 11:21:04 +01:00
Graham Triggs
4da85f0d82 Graph cache fix 2017-10-18 17:19:10 +01:00
Graham Triggs
963c04340f [VIVO-1401] Don't return a constructed model if there are no construct queries 2017-10-12 09:45:07 +01:00
Graham Triggs
792ca4138f [VIVO-1400] Add the capability to use / parse out precise-subquery tags. 2017-10-12 09:30:37 +01:00
Graham Triggs
107c2bff03 [VIVO-1399] Improve performance of Graph URI lookups 2017-10-11 19:37:07 +01:00
Graham Triggs
a610e0ed25 [VIVO-1397] Faster and more reliable Solr indexing 2017-10-10 13:06:44 +01:00
Graham Triggs
ca68c2c610 Script for running findbugs 2017-10-05 19:54:50 +01:00
Graham Triggs
16efd306f7 Fix pom error with <build> tags 2017-10-05 18:46:13 +01:00
Graham Triggs
3d28c6a037 Configuration for Findbugs, with security plugin, and script to start gui 2017-10-05 18:43:29 +01:00
Graham Triggs
aac062cdfe Add Findbugs reporting 2017-10-05 18:10:24 +01:00