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Author SHA1 Message Date
Ariel D. Moya Sequeira
fe56093224 SPARQL query fix in IndividualSDB class 
This fixes an SPARQL query found in the IndividualSDB class, which triggers `NullPointerException`s when trying to use individuals retrieved using the `getRelatedIndividuals()` method. The defect was observed in the Vitro 1.8 release branch.

After fixing this, the `Individual` instances returned by the aforementioned method work correctly.
 2016-06-20 15:05:02 -06:00
Graham Triggs
c87a66c949 [VIVO-1224] Suppress default "synthetic" model from the lists on the ingest pages 2016-06-03 15:24:49 +01:00
grahamtriggs
b0d0925101 Merge pull request #41 from vivo-project/feature/1230 
[VIVO-1230] Make contact form compatible with SMTP relays
 2016-06-02 15:00:44 +01:00
Graham Triggs
4df281bcd2 [VIVO-1230] Make contact form compatible with SMTP relays 2016-06-02 14:06:16 +01:00
grahamtriggs
1493711434 Merge pull request #40 from vivo-project/feature/1233 
[VIVO-1233] Wrap large buttons on ontology edit page
 2016-06-01 15:30:34 +01:00
Graham Triggs
6e520da662 [VIVO-1233] Wrap large buttons on ontology edit page 2016-06-01 15:29:57 +01:00
Graham Triggs
e7336ab019 Fix error message (change erroneous UPDATE to SELECT) 2016-05-31 23:30:45 +01:00
Graham Triggs
607ce353ce Add initial travis configuration 2016-05-27 12:06:43 +01:00
grahamtriggs
1ee0ef72a8 Merge pull request #38 from vivo-project/feature/1245-resolve-duplication 
[VIVO-1245] Reduce code duplication and class overwriting in VIVO
 2016-05-26 19:23:29 +01:00
Graham Triggs
28a834d6d0 [VIVO-1245] Cleanup IndividualJsonWrapper 2016-05-25 20:59:47 +01:00
Graham Triggs
f3b66a9d42 [VIVO-1245] Cleanup Template Model classes 2016-05-25 19:47:34 +01:00
Graham Triggs
0e37b6a69e [VIVO-1245] Remove SelectDataGetterUtils - can't find any uses 2016-05-25 18:56:14 +01:00
Graham Triggs
825c81002b [VIVO-1245] Cleanup of MenuManagementDataUtils 2016-05-25 18:38:33 +01:00
Graham Triggs
fbeed01a94 [VIVO-1245] Cleanup of NewIndividualFormGenerator, simplify configuration of generators and improve means of configuring in Freemarker 2016-05-25 17:06:21 +01:00
Graham Triggs
5cbcab5bcc [VIVO-1245] Cleanup of ManageLabelsGenerator 2016-05-24 21:52:32 +01:00
Graham Triggs
64eb1ca6c2 [VIVO-1245] Cleanup of ProcessDataGetterN3Map 2016-05-24 17:37:23 +01:00
Graham Triggs
b285e0d62b [VIVO-1245] Cleanup of DefaultAddMissingIndividualFormGenerator 2016-05-24 17:05:15 +01:00
Graham Triggs
38836c15c9 [VIVO-1245] Cleanup of IndividualSearchResult 2016-05-24 14:33:45 +01:00
Graham Triggs
ca45b5e93d [VIVO-1222] Add revisionInfo to build 2016-05-23 15:11:16 +01:00
Graham Triggs
a484532b01 [VIVO-1242] Merge branch 'brianjlowe-writePerformance' into develop 2016-05-03 11:18:39 +01:00
Graham Triggs
f50d1d3e48 Merge branch 'writePerformance' of https://github.com/brianjlowe/Vitro into brianjlowe-writePerformance 2016-05-02 19:18:14 +01:00
Graham Triggs
437bb9f515 [VIVO-1236] Add TwelveMonkeys ImageIO library for full OpenJDK image support 2016-05-02 14:12:25 +01:00
Graham Triggs
721a7fb892 Merge branch 'develop' of https://github.com/vivo-project/Vitro into develop 2016-04-29 21:03:57 +01:00
Graham Triggs
73b1b12665 [VIVO-1241] Updated FreemarkerConfigurationImpl to override the correct getTemplate for Freemarker 2.3.23 2016-04-29 21:03:41 +01:00
Tim Worrall
9f21c8c976 Update level on ARG_0000028 faux properties was not working correctly due to a bug in the edit link macro. 2016-04-29 13:01:35 -04:00
Graham Triggs
8b088478f0 [VIVO-1240] Improve start up time with the graph equivalence test 2016-04-19 22:16:28 +01:00
grahamtriggs
75b8746026 Merge pull request #37 from OpenVIVO/develop 
Add .nt to FileGraphSetup
 2016-04-08 20:46:24 +01:00
Graham Triggs
2d5bfd19d0 Add .nt to FileGraphSetup 2016-04-08 20:43:07 +01:00
grahamtriggs
478e3b8217 Merge pull request #36 from OpenVIVO/develop 
[VIVO-1238] Add N-TRIPLES support
 2016-04-04 15:09:39 +01:00
Graham Triggs
b513ad1056 [VIVO-1238] Add N-TRIPLES support 2016-04-04 15:08:27 +01:00
grahamtriggs
6480478002 Merge pull request #35 from OpenVIVO/develop 
Update JSTL dependencies
 2016-03-28 15:41:51 +01:00
Graham Triggs
aa3b011479 Update JSTL dependencies 2016-03-28 15:39:58 +01:00
grahamtriggs
4f9fe39ca3 Merge pull request #34 from OpenVIVO/develop 
Suppress dependency that causes OpenJDK problem
 2016-03-25 14:35:35 +00:00
Graham Triggs
df7c74206a [VIVO-1236] Remove dependency from compile that causes problems with OpenJDK 2016-03-25 14:34:38 +00:00
Graham Triggs
acf54541a5 [VIVO-1234] Use alternative colour space that should work better with OpenJDK 2016-03-11 15:15:47 +00:00
grahamtriggs
bae17b4293 Merge pull request #33 from OpenVIVO/develop 
VIVO-1234 JaiImageProcessor alpha channel problem
 2016-03-10 23:28:47 +00:00
Graham Triggs
bbad114f85 [VIVO-1234] Use alternative method to change the colour space of an image and remove the alpha channel 2016-03-10 23:20:35 +00:00
Graham Triggs
c7ca626121 Updated Freemarker 2016-03-07 21:20:35 +00:00
Paul Friedman
bc6eda75b1 Use posix extensions for maven-assembly-plugin 
After encountering the following error when attempting to build the application with maven

  [ERROR] Failed to execute goal org.apache.maven.plugins:maven-assembly-plugin:2.5.5:single (default) on project vitro-home: Execution default of goal org.apache.maven.plugins:maven-assembly-plugin:2.5.5:single failed: group id '1162086330' is too big ( > 2097151 ). Use STAR or POSIX extensions to overcome this limit -> [Help 1]

set the tarLongFileMode option to posix as it says in the error message and in the FAQ

  https://maven.apache.org/plugins/maven-assembly-plugin/faq.html#tarFileModes
 2016-02-16 13:01:14 -06:00
Benjamin Gross
7c42bb3c9f [VIVO-1229] fix siteName and title variable mixup 2016-02-16 10:08:23 -07:00
brianjlowe
97658ad25f Merge remote-tracking branch 'upstream/develop' into writePerformance 2016-02-11 17:49:23 +02:00
brianjlowe
e4a8c4f102 move unit test to new location 2016-02-11 16:38:17 +02:00
brianjlowe
724d8df369 Merge branch 'writePerformance-1.8' into writePerformance 2016-02-11 16:30:19 +02:00
Graham Triggs
9ff3dd5e11 [VIVO-1226] bug fix for search help back link 2016-01-21 15:55:49 +00:00
Ariel D. Moya Sequeira
950aecf7ab Adds UTF-8 charset to emails 2016-01-20 15:51:10 +00:00
Ariel D. Moya Sequeira
8660ed91eb Adds UTF-8 charset to emails 2016-01-20 15:51:09 +00:00
Ariel D. Moya Sequeira
9a2cc3a9cc Adds UTF-8 charset to emails 2016-01-20 15:51:08 +00:00
Ariel D. Moya Sequeira
074d9f98cf Adds UTF-8 charset to emails 2016-01-20 15:51:07 +00:00
grahamtriggs
3fb5f80119 Merge pull request #27 from lawlesst/fix/yasqe-js 
Move yasqe js to required location.
 2016-01-07 14:02:23 +00:00
Ted Lawless
11d8a91469 Move yasqe js to required location. 2016-01-06 14:20:43 -05:00