Also, in RefactorOperationController, edit events must be fired against the base model, not against the ontModel itself.
Also, add some debugging statements.
This is a minimal fix. It doesn't take related issues into account. It also doesn't attempt to
clean up the logic in IndividualController, or to deal with the fact that much of this logic is
repeated around the application.
People want to document the RDF directories (such as rdf/abox/filegraph) by adding README.md files
Such files produce either a warning or an exception, depending on the directory and who is reading.
Modify to ignore any file with a .md extension.
Move data directory from ontologies/update to version-specific directory ontologies/update17to18
Create ontologies/update15to16 and ontologies/update16to17 from previous update data directories.
Revise UpdateKnowledgeBase to accept the data directory as a parameter instead of having it hard-coded.
Create classes like Release18Migrator that will call UpdateKnowledgeBase with the appropriate directory, and do other release-specific migration tasks.
Make corresponding changes in startup_listeners.txt
When shutting down a ContentTripleSourceSDB instance, attempt to deregister the JDBC driver.
Also, attempt to shut down the AbandonedConnectionCleanupThread.
Each of these produce warning messages if not shut down.
For some reason, the property shows up once with a domain of OWL:Thing, and once with a domain of a blank node.
Treat them as equivalent and the problem disappears.
Modify signature for isEquivalentGraph() - might throw RDFServiceException
Modify RDFServiceTDB to work around the nonNegativeIntegerBug
Implement toString() for the entire RDFServiceImpl hierarchy
Parameterize ContentTripleSourceSPARQL.createRDFService() so ContentTripleSourceVirtuoso can override it.
Create ContentTripleSourceVirtuoso and RDFServiceVirtuoso, to work around the nonNegativeInteger bug
and the "INSERT DATA" problem.
Moves the test for isIsomorpic() to within the RDFService implementation,
so we can handle the "broken" cases like Virtuoso and TDB. This way seems
to be cleaner than the TripleStoreQuirks approach that I was fooling around with.
Create LabelsAcrossContextNodes to replace AdditionalURIsForContextNodes. It's more configurable.
Create SelectQueryUriFinder to replace AdditionalUrisForVCards. It's more configurable.
Rename SimpleSparqlQueryDocumentModifier to SelectQueryDocumentModifier, to conform.
Radically simplify the VIVO search configuration, omitting all special cases except those for VCards.
