Create LabelsAcrossContextNodes to replace AdditionalURIsForContextNodes. It's more configurable.
Create SelectQueryUriFinder to replace AdditionalUrisForVCards. It's more configurable.
Rename SimpleSparqlQueryDocumentModifier to SelectQueryDocumentModifier, to conform.
Radically simplify the VIVO search configuration, omitting all special cases except those for VCards.
This replaces IndividualDao.getAllOfThisTypeIterator(). It returns the list that was created instead of
the iterator.
This would require a change to ObjectSourceIFace, but we get rid of it instead. Nobody was using it.
Use no-argument constructors, supplying data through the ContextModelsUser interface as needed.
Add toString() methods to IndexingUriFinders, DocumentModifiers and SearchIndexExcluders
Create a bridge implementation of SearchIndexerImpl that just wraps around an old IndexBuilder.
Modify client code:
Application, BasicAuthenticator, SearchServiceController, SparqlUpdateApiController,
UpdateUrisInIndex and VClassGroupCache
Rewrite IndexController to use AJAX and to show the current status and history of the indexer events.
Take out the attribute key in SearchIndexerSetup. Nobody ever sets that attribute.
Take out the VClassGroupCache.removeClassesHiddenFromSearch() method. If nobody sets that attribute, this method does nothing.
Take out VClassGroupDao.removeClassesHiddenFromSearch() and VClassGroupDaoJena.removeClassesHiddenFromSearch(). They are never called.
Take out ClassProhibitedFromSearch interface. It is implemented but never referenced.
Take out FileBasedProhibitedFromSearch. It is never used.
Move ProhibitedFromSearch and ProhibitedFromSearchTest from edu.cornell.mannlib.vitro.webapp.search.beans to edu.cornell.mannlib.vitro.webapp.dao.vclassgroup
Probably due to a change in the algorithm for HashMap, or something similar.
This test expected a particular string in response, but Java 7 and Java 8 returned two different, but equivalent, strings.
Modify it so it will accept @prefix or xmlns: specifications in any order.
Replace PelletListener with a TBoxReasonerModule in the Application.
The reasoner will be accessible only through here, not as a context attribute or through the WebappDaoFactory.
Split out the initialization of the TBox reasoner from SimpleReasonerSetup.
Break out the filtering of TBox changes into a ConfiguredReasonerListener.
Refactor the threading logic into a BasicTBoxReasonerDriver.
Add a factory for creating VitroBackgroundThreads in an Executor.
Isolate the actual reasoner into a TBoxReasoner implementation. In this case, PelletTBoxReasoner.
Combine the consistency flag, error flag, explanation, and running status into one TBoxReasonerStatus object.
allUris parameter on modifyDocument() was not documented and not used.
There is no logical reason for modifyDocument to throw a SkipIndividualException.
Add OntModelCache to the top of the stack of RDF data structures.
Add DataStructuresProvider to the bottom of the stack.
Redesign ModelAccess method signatures.
Create the ShowSources page.
Remove RequestModelsPrep, except for setting the Collator.
Reduce the complexity of ContentModelsSetup and ConfigurationModelsSetup.
VIVO-225 VIVO-819 VIVO-820 VIVO-821 VIVO-823 VIVO-832
Replace the JAR files with more current ones.
Add a one-line change to BaseInfGraph (from the Jena source), so it will work with Pellet 2.3.1
Adjust all implementations of Graph to include new methods and remove old ones.
Add annotations and generics to reduce compiler warnings.
Remove all dependencies on RDB, which is no longer supported.
This requires considerable refactoring of JenaIngestController, RDFUploadController, listModels.jsp
Refactor the ModelMaker uses
Remove VitroJenaModelMaker,
Revise VitroInterceptingModelMaker to be configurable for Config or Content models
Add debug logging code to ModelChangeImpl ChangeSetImpl, RDFServiceJena.
Add TDB support: RDFServiceFactoryTDB, RDFServiceTDB
Refactor RDFServiceJena and RDFServiceSDB so much of the code can be reused by RDFServiceTDB
Accomodate two RDFService instances - one for Configuration models and one for Content models.
Changes to RDFServiceUtils, RDFServiceSetup
Configuration models use TDB directory in Vitro home directory
Handle bulk updating:
Jena has deprecated bulk operations, and their models classes no longer use the bulk updaters
Create a VitroModelFactory to use instead of the ModelFactory, when bulk updating is required.
Create adapter classes: BulkUpdatingModel, BulkUpdatingOntModel, AbstractModelDecorator
Make the configuration model setup algorithms uniform
Combine ApplicationModelSetup and UserModelSetup into ConfigurationModelsSetup
