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2015 commits

Author SHA1 Message Date
Jim Blake
08efbe2735 Don't offer Pellet reasoning on ingest. 2014-12-21 09:12:23 -05:00
Jim Blake
f339f1864f VIVO-863 get rid of GuardAgainstUnmigratedRDB 
It was only useful for the transition from 1.6 to 1.7, and it was a problem when someone used a triple-store other than SDB.
 2014-12-11 16:12:42 -05:00
Jim Blake
73b76a6e90 VIVO-933 Read PropertyConfig.n3 into an existing model, just once. 2014-12-11 15:51:59 -05:00
Jim Blake
481d3fc1d8 VIVO-695 VIVO-699 Refactor and optimize the PropertyRestrictionBean 
Formerly the PropertyRestrictionPolicyHelper.
 2014-12-10 17:39:06 -05:00
Tim Worrall
ee8300dccc No Jira issue. Faux property listing was not displaying all cases of a property where the labels were the same but the domains were different. 2014-12-09 13:16:20 -05:00
Jim Blake
875ba66a46 Merge branch 'develop' into feature/fauxEditing 2014-12-08 15:55:32 -05:00
Jim Blake
4b71c1d6bb VIVO-778 Refactor the connections to the TBox reasoner. 
Replace PelletListener with a TBoxReasonerModule in the Application.
   The reasoner will be accessible only through here, not as a context attribute or through the WebappDaoFactory.
Split out the initialization of the TBox reasoner from SimpleReasonerSetup.
Break out the filtering of TBox changes into a ConfiguredReasonerListener.
Refactor the threading logic into a BasicTBoxReasonerDriver.
   Add a factory for creating VitroBackgroundThreads in an Executor.
Isolate the actual reasoner into a TBoxReasoner implementation. In this case, PelletTBoxReasoner.
Combine the consistency flag, error flag, explanation, and running status into one TBoxReasonerStatus object.
 2014-12-08 10:54:07 -05:00
Tim Worrall
b8cb95d252 VIVO-922: updates for new faux listing functionality. New controller, template and js file, updated web.xml and site admin page, and updates to the all.properties 2014-12-05 16:57:09 -05:00
Tim Worrall
4da345d843 Merge branch 'feature/fauxEditing' of https://github.com/vivo-project/Vitro into feature/fauxEditing 2014-11-20 10:58:04 -05:00
Tim Worrall
6e212e2889 VIVO-724: minor clean up of verbose property display. 2014-11-20 10:57:46 -05:00
Jim Blake
ef6f92539f Merge branch 'develop' into feature/fauxEditing 2014-11-18 11:56:52 -05:00
Tim Worrall
adf04bd2be VIVO-900: on data property hierarchy, range class should be range data type 2014-11-18 10:56:02 -05:00
Tim Worrall
9ce4b1e275 some very minor jsp cleanup 2014-11-18 10:10:22 -05:00
Jim Blake
ebb31eb081 VIVO-906 Assemble application at runtime. 
Create an object to represent VitroHomeDirectory
Instantiate TripleSources, FileStorage, etc, based on the config file.
 2014-11-13 17:11:11 -05:00
Jim Blake
e665b48971 Add link to verbose panel, handle VCard oddities. 2014-11-07 10:32:33 -05:00
Jim Blake
1439c2195d tweaks to make the boolean values work. 2014-11-06 13:50:16 -05:00
Jim Blake
daac8c3c4f Populate the new bean from the base property. Handle policy restrictions. 2014-11-06 10:28:40 -05:00
Jim Blake
852da3ff2a Implement insert and update in FauxPropertyDaoJena 2014-11-05 11:37:52 -05:00
Jim Blake
c8368dbe2d Produce the pick-lists for range and domain. 
Still not submitting the results.
 2014-11-03 15:09:43 -05:00
Jim Blake
190bf87979 VIVO-774 More functionality: implement deleteFauxProperty() 2014-10-31 18:17:38 -04:00
Jim Blake
02ac3944e0 VIVO-774 show list of faux properties on the Property Editing page. 2014-10-30 15:52:23 -04:00
hudajkhan
456f8beb41 VIVO 888, and just a change to an if statement in the menumanagement file 2014-10-24 12:37:43 -04:00
Tim Worrall
ea98c15092 VIVO-217: modified template to handle situations where the associatedPage variable is null 2014-10-22 15:18:14 -04:00
Jim Blake
78c8f102f8 Continue to reduce the Model Madness! 
Add OntModelCache to the top of the stack of RDF data structures.
Add DataStructuresProvider to the bottom of the stack.
Redesign ModelAccess method signatures.
Create the ShowSources page.
Remove RequestModelsPrep, except for setting the Collator.
Reduce the complexity of ContentModelsSetup and ConfigurationModelsSetup.

VIVO-225 VIVO-819 VIVO-820 VIVO-821 VIVO-823 VIVO-832
 2014-10-10 10:07:56 -04:00
Tim Worrall
c9362db3c1 modifying previous commit so that the orcid code works correctly 2014-10-08 15:57:27 -04:00
Jim Blake
573a5e6cc6 Add a developer setting that will suppress automated search index updates. 2014-10-02 16:22:02 -04:00
Tim Worrall
18c3f769ee fixed issue where display was incorrect when a user was not logged in 2014-09-22 16:12:01 -04:00
Tim Worrall
8516955979 VIVO-201: removed some css redundancies 2014-09-22 12:58:52 -04:00
Jim Blake
b89dba1982 VIVO-862 add a filter to prevent Clickjacking. 2014-09-17 12:56:03 -04:00
Jim Blake
fc227d9fcd VIVO-861 Guard against Cross-Site Scripting attacks in the page title and in the body classes. 2014-09-16 13:26:03 -04:00
Tim Worrall
80733cdcfe updated class to use i18n strings defined in all.properties rather than hard-coded strings in the class 2014-08-19 14:47:10 -04:00
Jim Blake
6e5bbaeef8 VIVO-848 Move the FileStorage system behind an interface 
Add it to the Application framework, and do some cleanup.
 2014-08-14 16:54:29 -04:00
Tim Worrall
4849dd07ad VIVO-698: corrected a layout issue 2014-08-13 13:11:29 -04:00
Tim Worrall
27c62c26cc VIVO-532: modified display of language selectors 2014-08-13 12:17:05 -04:00
Ted Lawless
6b72b39729 Change link to documentation for StartupManager. 2014-07-31 12:20:08 -04:00
Jim Blake
58148630ad VIVO-823 Replace RDFServiceSetup with RDFSetup 
This introduces the RDFSource as a wrapper around an RDFServiceFactory and 2 ModelMakerFactorys.
This introduces ModelMakerUtils as a way to get the ModelMakers for context or for request.
Create implementations of RDFSource for SDB, TDB, and SPARQL.
The SDB implementation absorbs JenaPersistentDataSourceSetup and part of ConfigurationPropertiesSmokeTests,
which aren't needed unless we use SDB.

This is probably broken, without the subsequent changes.
 2014-07-18 17:15:24 -04:00
hudajkhan
72fbcedcba updates for returning array of most specific types and incorporating that check in removeConceptSubclasses in the client-side code VIVO-826 2014-07-10 12:37:16 -04:00
Jim Blake
1baf710499 Merge branch 'maint-rel-1.7' into develop 2014-06-27 14:31:36 -04:00
Jim Blake
466e295c79 VIVO-811 adjust the values of the mime-type radio buttons. 2014-06-27 14:31:19 -04:00
Tim Worrall
b572e3f474 VIVO-805: fix i18n parameter issue on password length string 2014-06-23 10:56:19 -04:00
Tim Worrall
8510505424 VIVO-805: fix i18n parameter issue on password length string 2014-06-23 09:42:00 -04:00
Tim Worrall
59ddbe15ec there were duplicate freemarker variables being used; resolved this by changing the name of the variable used for the application or site name 2014-06-20 13:08:55 -04:00
Jim Blake
ecbee098cb VIVO-784 remove duplicate results from "show statements". 
The clause to include statements in the default graph was showing everything twice, without filtering the statements in the named graph. Don't know why. Talked with Brian, and decided to remove it.
 2014-06-13 11:15:27 -04:00
Jim Blake
ea9d1e739d VIVO 746, at startup, remove obsolete Permissions from the user accounts model. 
Also, get rid of UpdatePermissionSetUris, which supported the transition from 1.4 to 1.5.
 2014-06-13 10:27:25 -04:00
brianjlowe
d7f1c88ce9 speeding up raw statements display by removing labels 2014-06-12 16:32:51 -04:00
Tim Worrall
4bbbf6fd6e update template to include new password length string 2014-06-12 12:57:50 -04:00
Jim Blake
66fbf81034 Merge commit 'a83c1e5e4fac33e8c09f964b7313ec53de8946fc' into feature/TDBfromRDB2 2014-06-11 16:50:58 -04:00
Jim Blake
7cf03661d4 VIVO-773 guard against RDB data that has not been migrated. 2014-06-09 15:37:54 -04:00
Jim Blake
ae6a2a7251 VIVO-719 Improve the user interface 2014-06-09 15:14:16 -04:00
Tim Worrall
f8616d4c85 VIVO-649: allow property groups to contain forward slashes 2014-06-09 11:15:55 -04:00