Commit graph

4561 commits

Author SHA1 Message Date
stellamit
e1e5fba67f NIHVIVO-3129 VIVO text appearing on RDF Export screen in vitro deployment 2011-10-24 22:04:52 +00:00
brianjlowe
f346789445 NIHVIVO-3236 fixes timeout bug when attaching models to TBox 2011-10-24 20:02:04 +00:00
stellamit
7d5a413c15 change log level for 'ontology prefix not found' message to debug NIHVIVO-3237 2011-10-24 18:55:41 +00:00
tworrall
56b938ca59 changing two global variables back to local variables 2011-10-24 14:15:42 +00:00
j2blake
293e762e23 NIHVIVO-2343 Create permissions for managing your own proxies and for managing all proxies. 2011-10-21 21:17:59 +00:00
j2blake
b28bacbdb5 NIHVIVO-2343 Extend UserAccount to include proxiedIndividualUris; extend the DAO. 2011-10-21 21:09:19 +00:00
tworrall
42cfa1e725 eliminate redundancy in related role property group list view 2011-10-21 20:53:36 +00:00
j2blake
6e3bf3891d NIHVIVO-2774 Create the JAR usage scanner script. 2011-10-20 21:55:24 +00:00
j2blake
f50f8eb919 NIHVIVO-2774 Remove JARs that we don't seem to be using. 2011-10-20 21:50:47 +00:00
j2blake
75a5229d56 Remove unused import statements. 2011-10-20 21:49:20 +00:00
hjkhjk54
b623d7847c Updates for RDFS Label and N-3 Editing 2011-10-20 20:31:53 +00:00
j2blake
7e4c8e6f75 NIHVIVO-2774 add cos.jar to the list of required JARs. 2011-10-19 21:16:59 +00:00
j2blake
2a05f4e2ca NIHVIVO-2774 improve the "jarlist" target in the build so known required JARs are listed in a file, and not hardcoded. 2011-10-19 20:47:05 +00:00
briancaruso
e4308ed5ab Increasing antisamy buffer size NIHVIVO-3192 2011-10-19 20:21:48 +00:00
j2blake
422e321a8f NIHVIVO-3141 Rename exmapleSolr directory to homeDirectoryTemplate 2011-10-18 21:09:22 +00:00
j2blake
811c3a994f Make the stack trace look better. 2011-10-18 20:55:49 +00:00
j2blake
946eb33363 NIHVIVO-2757 Change the name of the Solr context template. 2011-10-18 20:36:39 +00:00
j2blake
4444b9b21b NIHVIVO-2757 Change the way the Solr is deployed, so it is only re-deployed if something has changed. 2011-10-18 20:29:21 +00:00
hjkhjk54
94091c668e Updates for N3Editing 2011-10-17 19:05:30 +00:00
j2blake
8fc35cf66c NIHVIVO-2256 cosmetic changes: remove old commented-out code; add generics; remove compiler warnings. 2011-10-13 16:09:47 +00:00
j2blake
fbf2f04d86 NIHVIVO-2774 add a static analysis utility that will allow us to look for unused JARs in the distribution. 2011-10-12 20:54:34 +00:00
brianjlowe
ff91b5a67e removed log message 2011-10-12 14:57:12 +00:00
brianjlowe
1ec081dcf3 NIHVIVO-1228 NIHVIVO-3202 improved selection of editable properties: support for simple union domains and domain inheritance 2011-10-11 21:00:20 +00:00
j2blake
fc4a22d292 NIHVIVO-3209 Fix spelling error in comment. 2011-10-11 19:51:47 +00:00
j2blake
e8d8c494f7 NIHVIVO-3209 Create VitroBackgroundThread to provide an answer to the question "are all background threads idle?". Make IndexBuilder and VClassGroupCache.RebuildGroupCacheThread subclasses of VitroBackgroundThread, so they will be included in that question. 2011-10-11 19:45:30 +00:00
hjkhjk54
d3f77a374c Updates for resolving NIHVIVO-3217 and NIHVIVO-3218 2011-10-11 19:44:12 +00:00
hjkhjk54
591af24749 Updates for n3 editing and freemarker conversion. Also fixing propDelete.jsp's reference to freemarker configuration loading to include correct method call. 2011-10-11 15:49:19 +00:00
j2blake
23b55d2ae6 NIHVIVO-3209 Clarify logic in IndexBuilder; use a ConcurrentLinkedQueue to handle synchronization; use volatile flags so all threads will see changes; don't test if log is null since it cannot change. 2011-10-10 19:42:11 +00:00
j2blake
be06b68871 NIHVIVO-3209 Simplify logic in IndexBuilder; don't expose intermediate results as instance variables, where they could be subject to concurrency issues. 2011-10-10 19:09:10 +00:00
brianjlowe
9f95c3fbc7 NIHVIVO-1228 property offered for editing when an individual is a member of its union domain 2011-10-10 17:23:22 +00:00
tworrall
7c27022302 NIHVIVO-2293: removed about and acknowledge messages from Site Information page 2011-10-10 15:52:42 +00:00
j2blake
f3098b2705 Create basic smoke tests for startup; confirm that the home directory exists and is read/write; confirm that we can create a database connection. 2011-10-07 22:21:22 +00:00
brianjlowe
c95b7efc0b undoing pointless tiny change to individual template model 2011-10-06 20:25:44 +00:00
brianjlowe
adf5558aa4 minor modifications to avoid NPEs in property group property list handling 2011-10-06 18:17:00 +00:00
brianjlowe
85d21c5c59 NIHVIVO-3014 properties included on property group listing page 2011-10-06 16:24:10 +00:00
hjkhjk54
349559f20e update to delete property controller 2011-10-05 21:50:18 +00:00
hjkhjk54
de9f340eb6 delete property controller 2011-10-05 21:48:40 +00:00
hjkhjk54
ce5314e61d update to delete property controller 2011-10-05 21:44:05 +00:00
hjkhjk54
c4bbdd4154 Updates for n3 refactoring 2011-10-05 21:34:56 +00:00
brianjlowe
17a60cb81c NIHVIVO-3116 and assorted cleanup of legacy backend editor 2011-10-04 20:50:31 +00:00
tworrall
a9e36bd8dd minor change to have explanatory text wrap. will accomodate future changes. 2011-10-04 16:34:25 +00:00
j2blake
3317326131 NIHVIVO-2905 Create ManageSearchIndex as a separate requested action from UseMiscellaneousAdminPages. 2011-10-04 15:36:06 +00:00
j2blake
4e45b91c76 NIHVIVO-3137 not preparing the request is no cause for alarm. Remove the warning message. 2011-10-03 20:29:34 +00:00
j2blake
bded986b92 NIHVIVO-3200 Make the FreemarkerConfigurationLoader a static utility class with a local cache, instead of having the loader as a context attribute and the cache as another context attribute. 2011-10-03 20:16:55 +00:00
j2blake
dc450cd25c NIHVIVO-3135 Clean up the use of defaultNamespace in JenaDataSourceSetup (and sub-classes), and improve the error message if it doesn't match the one in the database. 2011-10-03 17:03:51 +00:00
j2blake
3f6b6a7d28 NIHVIVO-1810 Change the way that the default theme and the list of available themes are handled. If the application is configured to use a theme that is not found, it will throw a warning on the StartupStatus and use the default theme instead. 2011-09-30 22:10:39 +00:00
j2blake
0ed27c1d51 Remove unused methods from InitialJenaModelUtil: basicInterfaceData() and basicClassgroup() 2011-09-30 21:08:01 +00:00
j2blake
767858859c NIHVIVO-2811 Change the token which is expanded during deployment, to match the new name in the build script. 2011-09-29 21:00:39 +00:00
stellamit
cc639de7f4 NIHVIVO-3198 - include namespace prefixes defined via VIVO admin interface in the RDF output from VIVO 2011-09-29 19:06:47 +00:00
j2blake
1d321f6c83 NIHVIVO-336 Clean up some unused context listeners. 2011-09-28 16:20:36 +00:00