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2950 commits

Author SHA1 Message Date
Brian Caruso
d802b95f9c removing white space from very long line 2013-08-02 11:30:33 -04:00
Brian Caruso
6a3e6f4f5b Merge branch 'develop' into issue-vivo-101-sparqlupdate 2013-07-31 13:53:39 -04:00
Brian Caruso
b9d1b5d48f Remvoing unused Solr fileds ALLTEXT_PHONETIC, PHI, ADJACENT_NODES, modType, JCLASS, 
Adding field mostSpecificTypesURIs for VIVO-221
 2013-07-25 11:38:40 -04:00
Brian Caruso
5b0f8919b7 Fixing broken FileUploadServletRequest VIVO-222 2013-07-24 17:14:32 -04:00
Brian Caruso
efb879ce1e Removing classLocalNameLowerCase from solr schema.xml VIVO-161 2013-07-22 15:44:22 -04:00
j2blake
73fd47dd55 VIVO-212 The "unfiltered" WebappDaoFactory must be built from language-aware models, even if no policy filtering is applied. 2013-07-22 12:31:56 -04:00
Brian Caruso
463453111d Adding proof of concept SPARQL update VIVO-101 2013-07-19 13:49:02 -04:00
j2blake
fcbe59dcf6 Use the WADF from the request, not from the context. 
It will never be null.
 2013-07-18 16:18:49 -04:00
Brian Caruso
54f79f2ea7 Normalize line endings VIVO-101 2013-07-18 15:19:53 -04:00
Brian Caruso
dfce1429b1 Merge branch 'issue-vivo-191' into develop 2013-07-18 14:35:05 -04:00
Brian Caruso
c1a6c0b228 Removing unused properties VIVO-191 2013-07-18 14:32:45 -04:00
j2blake
4f6679be58 VIVO-212 Rename WADF access methods on VitroRequest 
Use the term Unfiltered instead of Full, for consistency with other places in Vitro.
 2013-07-18 13:22:45 -04:00
j2blake
c3a0568114 VIVO-212 Add unfiltered WADFs to ModelAccess 
Create two new FactoryIDs: UNFILTERED_BASE and UNFILTERED_UNION
Modify VitroRequest so the unfiltered WADF is no longer stored in an attribute on the request.
Initialize them in the context - same as the BASE and UNION
Initialize them in the request - same as the BASE, but UNION will be filtered.
 2013-07-18 12:37:20 -04:00
Brian Caruso
7620e43209 Merge branch 'develop' of github.com:vivo-project/Vitro into develop 2013-07-17 15:03:38 -04:00
Brian Caruso
38e6146390 Fixing RDF edit on session experation. VIVO-186 2013-07-17 15:03:28 -04:00
j2blake
8f336b3505 VIVO-213 smoke test to check JVM temp directory 
If it isn't set, if it isn't a directory, if we can't access it, if we can't create a temp file, complain.
 2013-07-17 13:01:08 -04:00
Brian Caruso
e3b57fd0b6 Improved the option sorting code in IndividualTypeRetryController VIVO-154 2013-07-17 11:52:42 -04:00
Brian Caruso
8d78ba0373 Change to comments in VClassGroupCache 2013-07-16 17:27:14 -04:00
Brian Caruso
fb28ce2d6d Adding checks for exceptions to solr index building. 2013-07-16 16:15:26 -04:00
Brian Caruso
268a786214 Adding check for null to IndividualFiltering to avoid problems from jena parse errors 2013-07-16 16:14:45 -04:00
Brian Caruso
fb46e64725 Adding login via email/password parameters 2013-07-16 12:28:24 -04:00
Brian Caruso
7905b80df4 Adding initial search web service for updating uris. VIVO-98 2013-07-15 14:14:15 -04:00
Brian Caruso
2b5af0f084 Adding streaming support to MultipartHttpServletRequest.java 2013-07-15 14:12:42 -04:00
Brian Caruso
be734aa293 adding files that were missed from branch 2013-07-10 15:30:38 -04:00
Brian Caruso
9d1c7e009e Adding SimplePermission.DO_FRONT_END_EDITING.ACTIONS to DeletePropertyController. VIVO-57 2013-07-10 15:01:39 -04:00
Brian Caruso
5a85337afc removing unused method isGeneratedModelFromField from ProcessRdfForm 2013-07-10 15:00:51 -04:00
Brian Caruso
1b5181e456 moving RdfLiteralHash to different package 2013-07-10 12:50:29 -04:00
Brian Caruso
0eda150d62 Moving static methods from EditN3Utils to N3EditUtils. Removing EditN3Utils 2013-07-10 12:33:43 -04:00
Brian Caruso
0e26d45a31 Removing unused N3EditFormController VIVO-50 2013-07-10 10:07:00 -04:00
Brian Caruso
674ca6f774 Adding test of Solr setup and indexing. The SolrSetup test will start a 
solr server, load RDF from test/testontologies/SolrQueryTestRDF, index
the individuals in the RDF and then run some test solr queries.
 2013-07-09 11:41:01 -04:00
Brian Caruso
467256e3ba Merge branch 'develop' of github.com:vivo-project/Vitro into develop 2013-07-08 13:52:05 -04:00
Jim Blake
6641725042 Merge pull request #4 from vivo-project/feature/search-download 
Feature/search download
 2013-06-28 12:15:12 -07:00
brianjlowe
dae9c0c12f improvements to superclass methods in VClassDaoJena to support VIVO-60 2013-06-24 16:47:46 -04:00
brianjlowe
e3fe0ac52b continuing work on VIVO-60 application ontology support for property/class combinations 2013-06-21 16:47:42 -04:00
j2blake
c29461343a VIVO-140 For the request, wrap additional models in language-aware filters. 2013-06-21 14:52:06 -04:00
j2blake
ebcf6079a5 VIVO-140 Modify client code to get language-aware extract from VClassGroupCache 2013-06-21 14:51:33 -04:00
j2blake
24562b6746 VIVO-140 Modify VClassGroupCache to provide a language-aware extract 
With very little change in the method calls, client code can get the VClasses and VClassGroups with labels that are appropriate for the preferred language in the current request.
 2013-06-21 14:47:29 -04:00
brianjlowe
d2177ab3ce Merge branch 'develop' of https://github.com/vivo-project/Vitro into develop 2013-06-20 12:45:14 -04:00
brianjlowe
54f43f56d3 ongoing work on VIVO-60 application ontology support for property/class combinations 2013-06-20 12:43:53 -04:00
j2blake
951e7af9b0 No longer used 2013-06-20 12:18:03 -04:00
j2blake
d977c4d52d Remove unused import statements. 2013-06-20 11:59:27 -04:00
j2blake
a42b4cbe25 VIVO-126 Default WADF on the request must include language filter. 
In this case, the application metadata model was not filtered.
 2013-06-18 14:32:12 -04:00
j2blake
4ee600a0d4 VIVO-80 Default WADF on the request must include language filter. 
In this case, the display model was not filtered.
 2013-06-18 11:32:48 -04:00
j2blake
5de5a322a2 VIVO-139 Use the I18n framework wherever DisplayMessage is loaded. 2013-06-14 12:47:37 -04:00
j2blake
aa7c8024d0 VIVO-125 Improvements to I18n 
Do not clear the cache more than once per request. Improve the hooks for unit tests.
 2013-06-14 12:41:33 -04:00
brianjlowe
b26922242a work on VIVO-60 application ontology code for class/property combination configuration 2013-06-12 16:57:37 -04:00
tworrall
f3acf5afe6 VIVO-65. for property groups, edit form was incorrect 2013-06-11 13:35:19 -04:00
j2blake
57c962e82a VIVO-82 FileServingServlet must use an existing WADF. 
Request-specific WebappDaoFactory objects are not initialized on image requests.
 2013-06-07 16:22:33 -04:00
j2blake
69ab12c4bc VIVO-82 Remove the vestiges of VitroRequestPrep 
Unused imports prevented the compiling of JSPs
 2013-06-07 15:43:22 -04:00
j2blake
b86a34b611 VIVO-73 Check for null Set from ServletContext.getResourcePaths() 2013-06-06 18:09:13 -04:00