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5309 commits

Author SHA1 Message Date
j2blake
1b1c28f216 VIVO-235 Reduce "deprecation" messages in the build 
The @SuppressWarnings("deprecation") annotation doesn't apply to an import statement, but it does apply if the class is fully-qualified when created.
 2013-08-01 16:07:55 -04:00
j2blake
c75c0d0f9f VIVO-235 Reduce "deprecation" messages in the build 
It's OK for these stub classes to implement deprecated methods in the interfaces, as long as they declare those methods with @Override and @Deprecated.
 2013-08-01 16:06:59 -04:00
j2blake
56b963d8bc VIVO-235 Reduce "deprecation" messages in the build 
The benefit of making these instances deprecated is very small. The annoyance of having deprecation messages in the build is very real.
 2013-08-01 16:04:42 -04:00
j2blake
036d20b892 VIVO-227 Remove warning message from JsonServletTest 2013-08-01 15:24:33 -04:00
j2blake
6b3d9a28c7 VIVO-234 Ignore a runtime.properties file in the distribution directory 2013-08-01 15:08:15 -04:00
j2blake
914bb18278 VIVO-64 Modify UpdateKnowledgeBase so it doesn't require an empty directory. 
It will create any directories that it needs. It will also store them in [vitro.home]/upgrade/knowledgeBase instead of [webapps]/vivo/WEB-INF/ontologies/upgrade
 2013-07-31 16:30:40 -04:00
Brian Caruso
6a3e6f4f5b Merge branch 'develop' into issue-vivo-101-sparqlupdate 2013-07-31 13:53:39 -04:00
j2blake
50a6be56a2 VIVO-39 Deprecate the SimplePermission instances that we would like to see go away. 2013-07-29 14:30:49 -04:00
j2blake
578bc95b63 Merge branch 'develop' of git+ssh://github.com/vivo-project/Vitro into develop 2013-07-25 11:55:03 -04:00
j2blake
9f1b9f6beb Add license tag line. Remove unused imports. VIVO-222 2013-07-25 11:51:45 -04:00
Brian Caruso
b9d1b5d48f Remvoing unused Solr fileds ALLTEXT_PHONETIC, PHI, ADJACENT_NODES, modType, JCLASS, 
Adding field mostSpecificTypesURIs for VIVO-221
 2013-07-25 11:38:40 -04:00
Brian Caruso
5b0f8919b7 Fixing broken FileUploadServletRequest VIVO-222 2013-07-24 17:14:32 -04:00
j2blake
c00fefacfe Changes to the SolrSetup class require access to the newer HttpClient libraries 
VIVO-161 VIVO-43
 2013-07-24 11:49:56 -04:00
Brian Caruso
efb879ce1e Removing classLocalNameLowerCase from solr schema.xml VIVO-161 2013-07-22 15:44:22 -04:00
j2blake
73fd47dd55 VIVO-212 The "unfiltered" WebappDaoFactory must be built from language-aware models, even if no policy filtering is applied. 2013-07-22 12:31:56 -04:00
Brian Caruso
463453111d Adding proof of concept SPARQL update VIVO-101 2013-07-19 13:49:02 -04:00
tworrall
46ae630e95 VIVO-215: fix layout of search results page - the first search result was appearing up in the header as were the facets; standardize look of the download popup. Also ensure that longer headings that include types from the facet wrap to new line rather than overrun the search help link. 2013-07-18 16:56:56 -04:00
j2blake
fcbe59dcf6 Use the WADF from the request, not from the context. 
It will never be null.
 2013-07-18 16:18:49 -04:00
j2blake
345f99790f VIVO-212 Rename WADF access methods on VitroRequest 
Overlooked a reference in a JSP
 2013-07-18 15:31:42 -04:00
Brian Caruso
54f79f2ea7 Normalize line endings VIVO-101 2013-07-18 15:19:53 -04:00
Brian Caruso
dfce1429b1 Merge branch 'issue-vivo-191' into develop 2013-07-18 14:35:05 -04:00
Brian Caruso
c1a6c0b228 Removing unused properties VIVO-191 2013-07-18 14:32:45 -04:00
j2blake
4f6679be58 VIVO-212 Rename WADF access methods on VitroRequest 
Use the term Unfiltered instead of Full, for consistency with other places in Vitro.
 2013-07-18 13:22:45 -04:00
j2blake
c3a0568114 VIVO-212 Add unfiltered WADFs to ModelAccess 
Create two new FactoryIDs: UNFILTERED_BASE and UNFILTERED_UNION
Modify VitroRequest so the unfiltered WADF is no longer stored in an attribute on the request.
Initialize them in the context - same as the BASE and UNION
Initialize them in the request - same as the BASE, but UNION will be filtered.
 2013-07-18 12:37:20 -04:00
tworrall
614d338257 moving some i18n() strings from vivo (wilma theme) to vitro 2013-07-17 15:52:17 -04:00
Brian Caruso
7620e43209 Merge branch 'develop' of github.com:vivo-project/Vitro into develop 2013-07-17 15:03:38 -04:00
Brian Caruso
38e6146390 Fixing RDF edit on session experation. VIVO-186 2013-07-17 15:03:28 -04:00
j2blake
8f336b3505 VIVO-213 smoke test to check JVM temp directory 
If it isn't set, if it isn't a directory, if we can't access it, if we can't create a temp file, complain.
 2013-07-17 13:01:08 -04:00
Brian Caruso
e3b57fd0b6 Improved the option sorting code in IndividualTypeRetryController VIVO-154 2013-07-17 11:52:42 -04:00
Brian Caruso
926d154bce Added test to UrlBuilderTest for utf8 VIVO-168 2013-07-16 17:27:52 -04:00
Brian Caruso
8d78ba0373 Change to comments in VClassGroupCache 2013-07-16 17:27:14 -04:00
Brian Caruso
fb28ce2d6d Adding checks for exceptions to solr index building. 2013-07-16 16:15:26 -04:00
Brian Caruso
268a786214 Adding check for null to IndividualFiltering to avoid problems from jena parse errors 2013-07-16 16:14:45 -04:00
Brian Caruso
fb46e64725 Adding login via email/password parameters 2013-07-16 12:28:24 -04:00
Brian Caruso
7905b80df4 Adding initial search web service for updating uris. VIVO-98 2013-07-15 14:14:15 -04:00
Brian Caruso
2b5af0f084 Adding streaming support to MultipartHttpServletRequest.java 2013-07-15 14:12:42 -04:00
Brian Caruso
1b07173e7c Adding license 2013-07-10 16:49:01 -04:00
Brian Caruso
be734aa293 adding files that were missed from branch 2013-07-10 15:30:38 -04:00
Brian Caruso
9d1c7e009e Adding SimplePermission.DO_FRONT_END_EDITING.ACTIONS to DeletePropertyController. VIVO-57 2013-07-10 15:01:39 -04:00
Brian Caruso
5a85337afc removing unused method isGeneratedModelFromField from ProcessRdfForm 2013-07-10 15:00:51 -04:00
Brian Caruso
1b5181e456 moving RdfLiteralHash to different package 2013-07-10 12:50:29 -04:00
Brian Caruso
0eda150d62 Moving static methods from EditN3Utils to N3EditUtils. Removing EditN3Utils 2013-07-10 12:33:43 -04:00
Brian Caruso
0e26d45a31 Removing unused N3EditFormController VIVO-50 2013-07-10 10:07:00 -04:00
Brian Caruso
a31e464a3c SolrQueryTest doesn't work with vivo, setting to @Ignore 2013-07-09 16:55:29 -04:00
Brian Caruso
45baa8633c Removed unused build.xml property. 2013-07-09 11:45:00 -04:00
Brian Caruso
674ca6f774 Adding test of Solr setup and indexing. The SolrSetup test will start a 
solr server, load RDF from test/testontologies/SolrQueryTestRDF, index
the individuals in the RDF and then run some test solr queries.
 2013-07-09 11:41:01 -04:00
Brian Caruso
1d5f53ab78 Adding solr client libraries to test task. 
Removing old version of solrj from lib
Adding new version of solrj to lib
 2013-07-09 11:39:00 -04:00
Brian Caruso
467256e3ba Merge branch 'develop' of github.com:vivo-project/Vitro into develop 2013-07-08 13:52:05 -04:00
Jim Blake
6641725042 Merge pull request #4 from vivo-project/feature/search-download 
Feature/search download
 2013-06-28 12:15:12 -07:00
tworrall
a56a80074d removing some unused image files 2013-06-25 15:52:36 -04:00