Commit graph

2963 commits

Author SHA1 Message Date
hjkhjk54
47f37d4213 Including additional generator and field options that enable sorting individuals for an object property form by display rank annotations. 2012-10-26 20:25:43 +00:00
hjkhjk54
5973e7ec4d updates to vitro that enable field options to have custom comparators - this change is being implemented for Datastar but the code will be in Vitro to enable Vitro/VIVO to take advantage of these classes. New generator and field options classes have been added. 2012-10-24 21:19:40 +00:00
j2blake
6bbbe69f3c NIHVIVO-3996 If a database other than MySQL fails this test, inform them but don't call it a fatal error. 2012-10-18 16:10:20 +00:00
j2blake
4d33ac93c1 NIHVIVO-3996 Add a test to see whether the database is configured to use UTF-8. 2012-10-18 15:07:07 +00:00
j2blake
7d11a24191 NIHVIVO-3995 It is important that the default namespace end in "/individual/". Important enough that it becomes part of the startup smoke tests. 2012-10-17 19:09:38 +00:00
hjkhjk54
52314c4640 Updates for adding a data getter that executes a solr query to retrieve individuals for a specific vclass and returns the results - the default template is a copy of the individual list controller template - some code refactoring also breaks out some of the individual controller methods into solr query utils for potential further reuse. 2012-10-16 20:40:02 +00:00
j2blake
8c12deacec NIHVIVO-1054 Convert the Thread instances to VitroBackgroundThread instances, so we can track when the system becomes idle. 2012-10-15 19:26:43 +00:00
j2blake
b4796c649a NIHVIVO-3209 Create two controllers: one will show the status of all living instances of VitroBackgroundThread (for system monitoring); the other will wait until they are idle (for Selenium tests). 2012-10-15 19:23:05 +00:00
j2blake
e3db0778cb NIHVIVO-3940 If no NamespaceMapper is found in the ServletContext, log a warning message and return an empty string, instead of throwing an exception. 2012-10-08 20:20:20 +00:00
j2blake
f491a7c95c NIHVIVO-3988 Change the handling of multiple root user accounts, and remove the back-door login mechanism. 2012-10-08 16:46:31 +00:00
tworrall
72d2cafc2a merging 10098 to the trunk 2012-10-05 17:39:36 +00:00
brianjlowe
ec06bfd240 NIHVIVO-3978 chunking statement iteration to avoid OutOfMemoryErrors when recomputing inferences 2012-10-03 17:22:16 +00:00
brianjlowe
b7e2c71cc1 NIHVIVO-3978 reduction in memory use for clearing inference scratchpad and rebuild models 2012-10-01 20:08:28 +00:00
j2blake
e0a255c8b2 Merge from 1.5 branch: NIHVIVO-3977 Incorporate improvements in OpenSocial for 1.5.1. Also, make shinding_orng_tables.sql re-runnable. 2012-10-01 16:53:43 +00:00
brianjlowe
b9cd04f0fa NIHVIVO-3974 preventing reproduction of axioms with blank nodes in filegraphs and NIHVIVO-3958 applying query syntax leniency to RDFServiceSparql 2012-09-27 20:55:18 +00:00
brianjlowe
daf3018ed8 NIHVIVO-3972 preventing prefix collision in RDFUploadController 2012-09-26 20:04:35 +00:00
brianjlowe
d7605de8d2 NIHVIVO-3972 preventing prefix collision in RDFUploadController 2012-09-26 20:04:00 +00:00
brianjlowe
6314cd364d reduced memory use in getIndividualURIs() in ABox inference recomputation 2012-09-26 19:27:32 +00:00
j2blake
9cdffd0c09 Merge from 1.5 branch: NIHVIVO-3973 If the Solr index is not available, do not offer the user the ability to re-index. Show an error message instead. 2012-09-26 16:02:27 +00:00
brianjlowe
88e44af429 NIHVIVO-3971 setup of inference rebuild and scratchpad models; also bugfix to SimpleBridgingRule 2012-09-25 15:44:15 +00:00
hjkhjk54
0b3d14ebab Updates for enabling the association of sparql queries with OWL classes and allowing the individual response builder to retrieve data (using data getters) and make that data available to the templates. Additionally, I'm adding a new data post processor that allows 'duplicate' results (or results with the same object uri for the main subject uri) to be returned - this relates to work being done by Frances for Vitro. This post processor will need to be explicitly included for it to be used. 2012-09-24 16:14:51 +00:00
brianjlowe
4f7e6d0ee4 fixes ConcurrentModificationException in SimpleBridgingRule 2012-09-21 20:04:22 +00:00
briancaruso
217cb13019 Adding license comment 2012-09-21 19:25:33 +00:00
briancaruso
367225de91 Merge from 1.5-maint 2012-09-21 18:28:21 +00:00
briancaruso
fddf1d2af9 Changed IndexBuilder to use a Set instead of a Queue for changed statements, NIHVIVO-3969.
Changed SearchReindexingListener to copy statements so they are not associated to any Model, NIHVIVO-3969.
2012-09-21 18:25:28 +00:00
briancaruso
b005179a0b Adding a RDFService that does not check query syntax 2012-09-21 18:22:09 +00:00
brianjlowe
61ede29fa7 NIHVIVO-3967 retraction of inferences by SimpleBridgingRule in batch mode and NIHVIVO-3955 batch mode retraction performance improvments for SimpleReasoner 2012-09-21 16:34:27 +00:00
tworrall
fb483663bf merging r10056 to the trunk 2012-09-19 15:25:42 +00:00
brianjlowe
950be11440 NIHVIVO-3961 fixes bug with premature connection closing during URI refactoring 2012-09-14 18:13:02 +00:00
brianjlowe
cf7f25af3b NIHVIVO-3957 fixes exceptions when attempting to edit or delete individuals using the backend editor 2012-09-13 15:32:06 +00:00
brianjlowe
2c83351eb6 NIHVIVO-3956 SPARQL-based implementations of getMostSpecificTypeURIs() getDataValue() and isVClass() to shorten render time of short views 2012-09-12 20:03:21 +00:00
brianjlowe
b90d1ebefe NIHVIVO-3946 fixes incorrect listing of individuals asserted to be in class 2012-09-10 20:11:37 +00:00
tworrall
c3ebf8eb49 merging r10046 to the trunk 2012-09-10 17:38:46 +00:00
stellamit
4bb5d83e17 merging NIHVIVO-3935 from the 1.5 branch to the trunk 2012-09-08 17:15:38 +00:00
j2blake
0a72583712 Merge from 1.5 branch: NIHVIVO-3954 Add OpenSocial bug fixes from Eric Meeks: make compound key in app_registry table, show sandbox login, ensure that randomly assigned Gadget ID is not negative, modify JS to find out whose page we are on. 2012-09-07 15:41:57 +00:00
brianjlowe
07b73bbc22 license tag for RDFServiceFactorySDB 2012-09-06 20:02:14 +00:00
tworrall
71d5fb7f76 merging r10037 to the trunk 2012-09-06 19:40:47 +00:00
brianjlowe
4fde9b8166 NIHVIVO-3951 performance improvements for SPARQL with OPTIONAL on query page and NIHVIVO-3953 support for older SPARQL and ARQ syntaxes 2012-09-06 18:44:45 +00:00
brianjlowe
0a4262d876 enabling connection testing with C3P0 2012-08-31 15:14:04 +00:00
hjkhjk54
c0062ce189 handling editing in page management where one content type is deleted and another is added in its place (added code to force new uri for data getter variable for added content in editing situation) 2012-08-30 20:59:48 +00:00
brianjlowe
d7551ae44c C3P0 library for connection pool 2012-08-30 18:08:41 +00:00
hjkhjk54
2e07a5687c updates for page management, enabling changing class group content type to internal class/selected classes and vice versa 2012-08-30 17:52:43 +00:00
tworrall
9fd7540e5e merging r10020 to the trunk 2012-08-28 17:01:34 +00:00
tworrall
9a4415ea04 merging 10016 to the trunk 2012-08-28 15:34:57 +00:00
hjkhjk54
b0f4e7e820 updates for page management and adding rdfs prefix to menu.n3 2012-08-20 19:26:32 +00:00
hjkhjk54
34858fcadb updates for page management as well as some changes to schema.xml to enable addition of dynamic fields (for datastar but also present if others would like to employ it) - some additional debug lines to ContextNodeFields. 2012-08-16 21:17:40 +00:00
tworrall
eae6359a6d merging r10007 to the trunk 2012-08-09 19:10:49 +00:00
tworrall
4f56554901 merging r10004 to the trunk 2012-08-07 19:54:50 +00:00
hjkhjk54
71cdc0ae52 updates for fixing error when new content type is added when editing an existing page in page management (previously, data getter URI was checked for each content section/data getter URI, and this was resulting in an error when new content section/data getter was added in edit mode). 2012-08-06 20:55:49 +00:00
hjkhjk54
e8840bdc23 Updates for handling single and double quotes in html and sparql data getters 2012-08-06 19:33:42 +00:00