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vitro/webapp/lib
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Jim Blake 3a2930cdc6 VIVO-773 Update the JENA libraries and adjust to the changes 
Replace the JAR files with more current ones.
Add a one-line change to BaseInfGraph (from the Jena source), so it will work with Pellet 2.3.1
Adjust all implementations of Graph to include new methods and remove old ones.
Add annotations and generics to reduce compiler warnings.
Remove all dependencies on RDB, which is no longer supported.
   This requires considerable refactoring of JenaIngestController, RDFUploadController, listModels.jsp
Refactor the ModelMaker uses
   Remove VitroJenaModelMaker,
   Revise VitroInterceptingModelMaker to be configurable for Config or Content models
Add debug logging code to ModelChangeImpl ChangeSetImpl, RDFServiceJena.
Add TDB support: RDFServiceFactoryTDB, RDFServiceTDB
   Refactor RDFServiceJena and RDFServiceSDB so much of the code can be reused by RDFServiceTDB
Accomodate two RDFService instances - one for Configuration models and one for Content models.
   Changes to RDFServiceUtils, RDFServiceSetup
   Configuration models use TDB directory in Vitro home directory
Handle bulk updating:
   Jena has deprecated bulk operations, and their models classes no longer use the bulk updaters
   Create a VitroModelFactory to use instead of the ModelFactory, when bulk updating is required.
   Create adapter classes: BulkUpdatingModel, BulkUpdatingOntModel, AbstractModelDecorator
Make the configuration model setup algorithms uniform
   Combine ApplicationModelSetup and UserModelSetup into ConfigurationModelsSetup
2014-06-01 18:23:21 -04:00
..
activation-1.1.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
antisamy-1.4.4.jar Adding render time filtering of script elements to avoid javascript based security exploits. NIHVIVO-2678 2011-07-11 23:14:55 +00:00
aopalliance-1.0.jar Sesame library update and SparqlGraph for RDF API work 2012-03-08 19:19:24 +00:00
asm-3.1.jar Sesame library update and SparqlGraph for RDF API work 2012-03-08 19:19:24 +00:00
aterm-java-1.6.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
batik-css-1.7.jar these three jar files are need with the antysamy jar 2012-01-11 16:19:51 +00:00
batik-css.jar Adding render time filtering of script elements to avoid javascript based security exploits. NIHVIVO-2678 2011-07-11 23:14:55 +00:00
batik-util-1.7.jar these three jar files are need with the antysamy jar 2012-01-11 16:19:51 +00:00
c3p0-0.9.2-pre4.jar C3P0 library for connection pool 2012-08-30 18:08:41 +00:00
c3p0-oracle-thin-extras-0.9.2-pre4.jar C3P0 library for connection pool 2012-08-30 18:08:41 +00:00
cglib-2.2.jar Sesame library update and SparqlGraph for RDF API work 2012-03-08 19:19:24 +00:00
commons-beanutils.jar SDB implementation of RDF API (and merge from trunk) 2012-06-04 21:09:36 +00:00
commons-cli-1.2.jar Sesame library update and SparqlGraph for RDF API work 2012-03-08 19:19:24 +00:00
commons-codec-1.6.jar VIVO-773 Update the JENA libraries and adjust to the changes 2014-06-01 18:23:21 -04:00
commons-collections-3.2.1.jar Move FreeMarker templates, controllers, setup, and library upgrades into trunk. Not used to generate any pages or templates yet (except a couple of hidden pages that are only available through the url). 2010-05-11 20:37:48 +00:00
commons-dbcp-1.3.jar Sesame library update and SparqlGraph for RDF API work 2012-03-08 19:19:24 +00:00
commons-dbcp-1.4.jar NIHVIVO-2576 addresses issue with db connections closed by MySQL not being returned to the pool 2011-04-29 16:55:58 +00:00
commons-fileupload-1.2.1.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
commons-io-2.0.1.jar Update org.apache.commons.io library 2011-04-26 23:16:12 +00:00
commons-lang-2.6.jar Upgrading to apache commons lang version 2.6 2011-04-05 14:50:22 +00:00
commons-logging-1.1.1.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
commons-pool-1.3.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
commons-pool-1.5.4.jar Sesame library update and SparqlGraph for RDF API work 2012-03-08 19:19:24 +00:00
cos.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
csv-1.0.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
cxf-xjc-runtime-2.6.2.jar First cut of Orcid Integration is working 2014-02-26 14:58:18 -05:00
cxf-xjc-ts-2.6.2.jar First cut of Orcid Integration is working 2014-02-26 14:58:18 -05:00
dom4j-1.6.1.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
dwr-2.0.M2.8.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
easymock-3.2.jar Adding unit tests, adding easymock library, Fixed problem with URIs with localnames that start with a digit. VIVO-13 2013-08-30 14:19:13 -04:00
ezmorph-1.0.4.jar SDB implementation of RDF API (and merge from trunk) 2012-06-04 21:09:36 +00:00
fedora-client.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
fluent-hc-4.3.2.jar First cut of Orcid Integration is working 2014-02-26 14:58:18 -05:00
freemarker.jar NIHVIVO-2623 Upgrade to Freemarker 2.3.18 2011-05-25 20:08:35 +00:00
gson-1.4.jar 1. Refactored/Cleaned the front-end for the co-author vis. 2010-06-29 22:07:55 +00:00
httpclient-4.3.2.jar First cut of Orcid Integration is working 2014-02-26 14:58:18 -05:00
httpcore-4.3.1.jar First cut of Orcid Integration is working 2014-02-26 14:58:18 -05:00
httpmime-4.3.1.jar VIVO-44 Add some JARs and update others, to serve the updated SolrJ client. 2014-05-15 18:10:40 -04:00
icu4j-3.4.4.jar latest releases of Jena, ARQ, SDB, and Pellet libraries 2010-11-05 17:45:57 +00:00
iri-0.8.jar latest releases of Jena, ARQ, SDB, and Pellet libraries 2010-11-05 17:45:57 +00:00
iText-5.0.2.jar 1. Added code related to Visualization Framework. 2010-06-21 21:44:26 +00:00
jackson-annotations-2.3.0.jar new versions of jar files for sparql query json ld also used in vivo semantic search 2013-12-04 13:31:05 -05:00
jackson-core-2.3.0.jar new versions of jar files for sparql query json ld also used in vivo semantic search 2013-12-04 13:31:05 -05:00
jackson-databind-2.3.0.jar new versions of jar files for sparql query json ld also used in vivo semantic search 2013-12-04 13:31:05 -05:00
jai_codec.jar NIHVIVO-817 Use Java Advanced Imaging library to crop and scale images instead of javax.imageio 2010-07-15 20:05:41 +00:00
jai_core.jar NIHVIVO-817 Use Java Advanced Imaging library to crop and scale images instead of javax.imageio 2010-07-15 20:05:41 +00:00
jakarta-jstl1.2-jstl.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
jakarta-jstl1.2-standard.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
javax.json-1.0.4.jar First cut of Orcid Integration is working 2014-02-26 14:58:18 -05:00
javax.json-api-1.0.jar First cut of Orcid Integration is working 2014-02-26 14:58:18 -05:00
jaxrpc.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
jcl-over-slf4j-1.6.6.jar VIVO-44 Add some JARs and update others, to serve the updated SolrJ client. 2014-05-15 18:10:40 -04:00
jena-arq-2.10.1.jar VIVO-773 Update the JENA libraries and adjust to the changes 2014-06-01 18:23:21 -04:00
jena-core-2.10.1.jar VIVO-773 Update the JENA libraries and adjust to the changes 2014-06-01 18:23:21 -04:00
jena-iri-0.9.6.jar VIVO-773 Update the JENA libraries and adjust to the changes 2014-06-01 18:23:21 -04:00
jena-sdb-1.3.6.jar VIVO-773 Update the JENA libraries and adjust to the changes 2014-06-01 18:23:21 -04:00
jena-tdb-0.10.0.jar VIVO-773 Update the JENA libraries and adjust to the changes 2014-06-01 18:23:21 -04:00
jga-0.8.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
jgrapht-jdk1.5.jar latest releases of Jena, ARQ, SDB, and Pellet libraries 2010-11-05 17:45:57 +00:00
joda-time-1.4.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
json-lib-2.2.2-jdk15.jar SDB implementation of RDF API (and merge from trunk) 2012-06-04 21:09:36 +00:00
jsonld-java-0.3-SNAPSHOT.jar Adding JSON-LD to SPARQL form. Adding jsonld-java libraries. VIVO-255 2013-08-27 15:10:34 -04:00
jsonld-java-jena-0.3-SNAPSHOT.jar Adding JSON-LD to SPARQL form. Adding jsonld-java libraries. VIVO-255 2013-08-27 15:10:34 -04:00
jsoup-1.6.1.jar NIHVIVO-352 Applied Miles' patch for search snippets. 2011-07-18 16:26:53 +00:00
jsp-api.jar Move FreeMarker templates, controllers, setup, and library upgrades into trunk. Not used to generate any pages or templates yet (except a couple of hidden pages that are only available through the url). 2010-05-11 20:37:48 +00:00
jtidy-8.0-20060801.124516-2.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
junit-4.9.jar VIVO-773 Update the JENA libraries and adjust to the changes 2014-06-01 18:23:21 -04:00
ldap.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
log4j-1.2.16.jar VIVO-44 Add some JARs and update others, to serve the updated SolrJ client. 2014-05-15 18:10:40 -04:00
mail-1.4.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
mchange-commons-java-0.2.2.jar C3P0 library for connection pool 2012-08-30 18:08:41 +00:00
mysql-connector-java-5.1.30-bin.jar Upgrade to latest MySQL driver. 2014-05-15 14:45:55 -04:00
nekohtml.jar Adding render time filtering of script elements to avoid javascript based security exploits. NIHVIVO-2678 2011-07-11 23:14:55 +00:00
noggit-0.5.jar VIVO-44 Add some JARs and update others, to serve the updated SolrJ client. 2014-05-15 18:10:40 -04:00
ojdbc14_g.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
pellet-core.jar VIVO-773 Update the JENA libraries and adjust to the changes 2014-06-01 18:23:21 -04:00
pellet-datatypes.jar VIVO-773 Update the JENA libraries and adjust to the changes 2014-06-01 18:23:21 -04:00
pellet-el.jar VIVO-773 Update the JENA libraries and adjust to the changes 2014-06-01 18:23:21 -04:00
pellet-jena.jar VIVO-773 Update the JENA libraries and adjust to the changes 2014-06-01 18:23:21 -04:00
pellet-rules.jar VIVO-773 Update the JENA libraries and adjust to the changes 2014-06-01 18:23:21 -04:00
relaxngDatatype.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
rowset-20040728-v101.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
saaj.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
sac-1.3.jar these three jar files are need with the antysamy jar 2012-01-11 16:19:51 +00:00
saxon9he.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
servlet-api.jar Upgrade to servlet 2.5, since we have agreed to support nothing prior to Tomcat 6.0 2010-05-27 18:38:27 +00:00
slf4j-api-1.6.6.jar VIVO-44 Add some JARs and update others, to serve the updated SolrJ client. 2014-05-15 18:10:40 -04:00
slf4j-log4j12-1.6.6.jar VIVO-44 Add some JARs and update others, to serve the updated SolrJ client. 2014-05-15 18:10:40 -04:00
solr-core-4.7.2.jar VIVO-44 Upgrade SolrJ client libraries. 2014-05-15 14:32:44 -04:00
solr-solrj-4.7.2.jar VIVO-44 Upgrade SolrJ client libraries. 2014-05-15 14:32:44 -04:00
sparqltag.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
spring-aop-2.5.6.jar Sesame library update and SparqlGraph for RDF API work 2012-03-08 19:19:24 +00:00
spring-beans-2.5.6.jar Sesame library update and SparqlGraph for RDF API work 2012-03-08 19:19:24 +00:00
spring-context-2.5.6.jar Sesame library update and SparqlGraph for RDF API work 2012-03-08 19:19:24 +00:00
spring-context-support-2.5.6.jar Sesame library update and SparqlGraph for RDF API work 2012-03-08 19:19:24 +00:00
spring-core-2.5.6.jar Sesame library update and SparqlGraph for RDF API work 2012-03-08 19:19:24 +00:00
spring-web-2.5.6.jar Sesame library update and SparqlGraph for RDF API work 2012-03-08 19:19:24 +00:00
spring-webmvc-2.5.6.jar Sesame library update and SparqlGraph for RDF API work 2012-03-08 19:19:24 +00:00
spring2.5.6.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
standard-1.1.2.jar Sesame library update and SparqlGraph for RDF API work 2012-03-08 19:19:24 +00:00
stax-api-1.0.1.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
trippi-1.3.2-core.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
wsdl4j-1.5.2.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
wstx-asl-3.2.7.jar VIVO-44 Add some JARs and update others, to serve the updated SolrJ client. 2014-05-15 18:10:40 -04:00
xalan.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
xercesImpl-2.11.0.jar VIVO-773 Update the JENA libraries and adjust to the changes 2014-06-01 18:23:21 -04:00
xml-apis-1.4.01.jar VIVO-773 Update the JENA libraries and adjust to the changes 2014-06-01 18:23:21 -04:00
xpp3_min-1.1.3.4.O.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
xstream-1.2.2.jar Improve output: distinguish between failed assertions (failures) and unexpected exceptions (errors), and print a filtered stack trace for any exception. 2010-01-29 22:13:57 +00:00
zookeeper-3.4.5.jar VIVO-44 Add some JARs and update others, to serve the updated SolrJ client. 2014-05-15 18:10:40 -04:00