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Andrew Woods 8b9a7484b3
Create vivo/home on application start-up (#192)
* Create vivo/home on application start-up

- Add logic for untarring vivo-home

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Require runtime.properties and applicationSetup.n3 be in 'config/' dir

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Support loading config files with or without 'default' prefix
* Prioritize without the prefix

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Add leading slash to location of vivo-home.tar resource path
* This allows for deployment in both Tomcat and Jetty

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Ensure VIVO_HOME is populated whether it is empty or not

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Require common properties to be in JNDI

Properties include:
- vitro/home
- vitro/appName
- vitro/rootUserAddress
- vitro/defaultNamespace

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* VIVO-1443: non destructive vivo home untarring (#2)

* Upgrade Jena version to 3.16.0 (#196)

Related to: https://jira.lyrasis.org/browse/VIVO-1943

* remove example-settings.xml
* update home directory untar non-destructive
* checksum digest to retain modified files
* compare checksum from digest with existing file
* overwrite files that have not changed
* add command to manually generate checksum digest
* simplify parsing checksum digest using pattern

Co-authored-by: Andrew Woods <awoods@lyrasis.org>
Co-authored-by: Andrew Woods <awoods@duraspace.org>

* not overwrite existing file if same as tar entry (#3)

* Upgrade Jena version to 3.16.0 (#196)

Related to: https://jira.lyrasis.org/browse/VIVO-1943

* remove example-settings.xml
* update home directory untar non-destructive
* checksum digest to retain modified files
* compare checksum from digest with existing file
* overwrite files that have not changed
* add command to manually generate checksum digest
* simplify parsing checksum digest using pattern
* do not overwrite file if same as already exists

Co-authored-by: Andrew Woods <awoods@lyrasis.org>
Co-authored-by: Andrew Woods <awoods@duraspace.org>

* Update log messages for clarity

Co-authored-by: Andrew Woods <awoods@duraspace.org>
Co-authored-by: William Welling <wwelling@library.tamu.edu>
Co-authored-by: Gross, Benjamin <benjamin.gross@clarivate.com>
2021-02-05 10:58:37 -06:00
.github VIVO-1437 Add pull request template (#66) 2018-02-07 19:40:45 -05:00
api Create vivo/home on application start-up (#192) 2021-02-05 10:58:37 -06:00
dependencies Upgrade Jena version to 3.16.0 (#196) 2020-12-03 07:56:29 -06:00
home Create vivo/home on application start-up (#192) 2021-02-05 10:58:37 -06:00
installer Create vivo/home on application start-up (#192) 2021-02-05 10:58:37 -06:00
webapp [VIVO-1872] - Add download option to SPARQL Query page (#164) 2020-05-27 23:58:20 -05:00
.gitattributes VIVO-4 remove the license substitution code from the license scanner 2013-08-26 14:56:54 -04:00
.gitignore Add ElasticSmokeTest 2019-04-03 12:18:55 -04:00
.travis.yml Testing Travis trusty (beta) environment 2017-01-26 17:50:37 +00:00
LICENSE Update license year 2018-01-08 14:35:37 +01:00
pom.xml [maven-scm-plugin] prepare development vitro-1.11.2-SNAPSHOT 2020-03-07 10:31:59 -06:00
rc_script.sh new file: rc_script.sh 2020-03-07 10:17:33 -06:00
README.md Add Travis-CI Badge to README.md (#92) 2018-10-31 11:17:42 -04:00
update-versions.sh Add script to update version numbers 2016-07-07 10:21:30 +01:00

What is Vitro?

Build Status

Vitro is a general-purpose web-based ontology and instance editor with customizable public browsing.

Vitro is an integrated ontology editor and semantic web application.

Vitro is a Java web application that runs in a Tomcat servlet container.

With Vitro, you can:

  • Create or load ontologies in OWL format
  • Edit instances and relationships
  • Build a public web site to display your data
  • Search your data with Apache Solr

Vitro was originally developed at Cornell University, and is used as the core of the popular research and scholarship portal, VIVO.

For more information, contact the VIVO community.