Enable war deployment model (#197)

* Add 'home' files into build war artifact

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Disable copying exploded war to Tomcat dir

- hardcode vivo.all.log file name
- must now set system property: -Dvivo-dir=/opt/vivo/home/

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Ensure build does not remove and re-add VIVO_HOME/rdf

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Remove unnecessary profile from installer/pom.xml

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Rename example config files to have 'default' prefix

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Require common properties to be in JNDI

Properties include:
- vitro/home
- vitro/appName
- vitro/rootUserAddress
- vitro/defaultNamespace

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* VIVO-1443: app name (#2)

* Non-functional change to comment in example.applicationSetup.n3

Related to: https://jira.lyrasis.org/browse/VIVO-1741

* Update orcidConfirm.ftl (#199)

* remove example-settings.xml
* simplify war name and afford override during build
* default app name to vivo and pass into context.xml

Co-authored-by: Andrew Woods <awoods@duraspace.org>
Co-authored-by: L.O <53535673+lb-ov@users.noreply.github.com>

Co-authored-by: Andrew Woods <awoods@duraspace.org>
Co-authored-by: William Welling <wwelling@library.tamu.edu>
Co-authored-by: L.O <53535673+lb-ov@users.noreply.github.com>

home/src/main/resources/config/default.runtime.properties

@@ -19,27 +19,6 @@
 # BASIC PROPERTIES
 # -----------------------------------------------------------------------------
 
-  #
-  # This namespace will be used when generating URIs for objects created in the
-  # editor. In order to serve linked data, the default namespace must be composed
-  # as follows (optional elements in parentheses):
-  #
-  # scheme + server_name (+ port) (+ servlet_context) + "/individual/"
-  #
-  # For example, Cornell's default namespace is:
-  #
-  # http://vivo.cornell.edu/individual/
-  #
-Vitro.defaultNamespace = http://vivo.mydomain.edu/individual/
-
-  #
-  # The email address of the root user for the VIVO application. The password
-  # for this user is initially set to "rootPassword", but you will be asked to
-  # change the password the first time you log in.
-  #
-rootUser.emailAddress = vivo_root@mydomain.edu
-
-
 #
 # Argon2 password hashing parameters for time, memory and parallelism required to
 # compute a hash.
@@ -79,13 +58,12 @@ email.replyTo = vivoAdmin@mydomain.edu
   #
   # URL of Solr context used in local VIVO search. This will usually consist of:
   #     scheme + server_name + port + vivo_webapp_name + "solr"
-  # In the standard installation, the Solr context will be on the same server as VIVO,
-  # and in the same Tomcat instance. The path will be the VIVO webapp.name (specified
-  # in build.properties) + "solr"
+  # In the standard installation, the Solr context will be on the same server as VIVO
+  # as a standalone service.
   #   Example:
-  #     vitro.local.solr.url = http://localhost:8080/vivosolr
+  #     vitro.local.solr.url = http://localhost:8983/solr/vivocore
   #
-vitro.local.solr.url = http://localhost:8080/vivosolr
+vitro.local.solr.url = http://localhost:8983/solr/vivocore
 
 
 # -----------------------------------------------------------------------------