Enable war deployment model (#197)

* Add 'home' files into build war artifact

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Disable copying exploded war to Tomcat dir

- hardcode vivo.all.log file name
- must now set system property: -Dvivo-dir=/opt/vivo/home/

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Ensure build does not remove and re-add VIVO_HOME/rdf

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Remove unnecessary profile from installer/pom.xml

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Rename example config files to have 'default' prefix

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* Require common properties to be in JNDI

Properties include:
- vitro/home
- vitro/appName
- vitro/rootUserAddress
- vitro/defaultNamespace

Related to: https://jira.lyrasis.org/browse/VIVO-1443

* VIVO-1443: app name (#2)

* Non-functional change to comment in example.applicationSetup.n3

Related to: https://jira.lyrasis.org/browse/VIVO-1741

* Update orcidConfirm.ftl (#199)

* remove example-settings.xml
* simplify war name and afford override during build
* default app name to vivo and pass into context.xml

Co-authored-by: Andrew Woods <awoods@duraspace.org>
Co-authored-by: L.O <53535673+lb-ov@users.noreply.github.com>

Co-authored-by: Andrew Woods <awoods@duraspace.org>
Co-authored-by: William Welling <wwelling@library.tamu.edu>
Co-authored-by: L.O <53535673+lb-ov@users.noreply.github.com>

installer/webapp/src/main/webResources/WEB-INF/classes/log4j.properties

@@ -24,7 +24,7 @@
 # debug.log4j.properties exists will be used instead, if it exists, but is not stored in Subversion.
 
 log4j.appender.AllAppender=org.apache.log4j.RollingFileAppender
-log4j.appender.AllAppender.File= ${catalina.base}/logs/${app-name}.all.log
+log4j.appender.AllAppender.File= ${catalina.base}/logs/vivo.all.log
 log4j.appender.AllAppender.MaxFileSize=10MB
 log4j.appender.AllAppender.MaxBackupIndex=10
 log4j.appender.AllAppender.layout=org.apache.log4j.PatternLayout