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Vivo 1287 (#137)

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Remove five subclass axioms from five classes that had been subclass of skos:Concept; add subClassOf(DateTimeValuePrecision, Quality)

Resolves VIVO-1287
https://jira.duraspace.org/browse/VIVO-1287
This commit is contained in:
Don Elsborg 2019-08-09 06:14:31 -06:00 • committed by Brian Lowe
parent f597b7ee42
commit 06d266ea94
1 changed files with 52 additions and 15 deletions
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home/src/main/resources/rdf/tbox/filegraph/vivo.owl
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@ -5954,7 +5954,12 @@ To enable other Gender/Sex codes to be used, this dataproperty has range URI. Th
<owl:Class rdf:about="http://purl.obolibrary.org/obo/ARG_2000376"> <owl:Class rdf:about="http://purl.obolibrary.org/obo/ARG_2000376">
<rdfs:label xml:lang="en">Contact Qualifier</rdfs:label> <rdfs:label xml:lang="en">Contact Qualifier</rdfs:label>
<rdfs:subClassOf rdf:resource="http://www.w3.org/2004/02/skos/core#Concept"/> <obo:IAO_0000112 xml:lang="en">Examples are business address, shipping address.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/>
<obo:IAO_0000115 xml:lang="en">The purpose of contact information.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">Contact qualifiers are represented as individuals of this class. We do
not have an authoritative controlled vocabulary for contact qualifiers.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Michael Conlon</obo:IAO_0000117>
</owl:Class> </owl:Class>
@ -8592,7 +8597,6 @@ has super-classes</obo:IAO_0000115>
<owl:Class rdf:about="http://vivoweb.org/ontology/core#AcademicDegree"> <owl:Class rdf:about="http://vivoweb.org/ontology/core#AcademicDegree">
<rdfs:label xml:lang="en">Academic Degree</rdfs:label> <rdfs:label xml:lang="en">Academic Degree</rdfs:label>
<rdfs:subClassOf rdf:resource="http://www.w3.org/2004/02/skos/core#Concept"/>
<rdfs:subClassOf> <rdfs:subClassOf>
<owl:Restriction> <owl:Restriction>
<owl:onProperty rdf:resource="http://vivoweb.org/ontology/core#abbreviation"/> <owl:onProperty rdf:resource="http://vivoweb.org/ontology/core#abbreviation"/>
@ -8606,9 +8610,19 @@ has super-classes</obo:IAO_0000115>
<owl:onDataRange rdf:resource="http://www.w3.org/2001/XMLSchema#nonNegativeInteger"/> <owl:onDataRange rdf:resource="http://www.w3.org/2001/XMLSchema#nonNegativeInteger"/>
</owl:Restriction> </owl:Restriction>
</rdfs:subClassOf> </rdfs:subClassOf>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An academic degree at any level, both as reported by individuals for employment and as offered by academic degree programs.</obo:IAO_0000115> <obo:IAO_0000112 xml:lang="en">B.A. Bachelor of Arts</obo:IAO_0000112>
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">B.A. Bachelor of Arts</obo:IAO_0000112> <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/> <!-- check this -->
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">This list may have multiple abbreviations for some degrees.</obo:IAO_0000112> <obo:IAO_0000115 xml:lang="en">An academic degree at any level, both as
reported by individuals for employment and as offered by academic degree programs.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">The ObjectProperty relates is used to associate an AcademicDegree with an AwardedDegree. A preferred
approach would be to recognize the AwardedDegree as an information artifact which is the output of an AcademicDegree process.
This would eliminate the use of relates and relatedBy in the
representation of Academic Degrees and Awarded Degrees, provide correct subsumption, and avoid the use of vivo:Relationship. Further, we could
rename AwardedDegree AcademicDegree (!) and rename AcademicDegree to AcademicDegreeProcess and eliminate the need for
the EducationalProcess currently in the model.
</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Michael Conlon</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Merriam Webster (https://www.merriam-webster.com/dictionary/degree)</obo:IAO_0000119>
</owl:Class> </owl:Class>
@ -8787,10 +8801,19 @@ This class allows for linking an author to a publication while indicating inform
<owl:Class rdf:about="http://vivoweb.org/ontology/core#Award"> <owl:Class rdf:about="http://vivoweb.org/ontology/core#Award">
<rdfs:label xml:lang="en">Award or Honor</rdfs:label> <rdfs:label xml:lang="en">Award or Honor</rdfs:label>
<rdfs:subClassOf rdf:resource="http://www.w3.org/2004/02/skos/core#Concept"/> <obo:IAO_0000112 xml:lang="en">The Wiley Prize in Biomedicine is awarded each year to a researcher for outstanding
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An Award or Honor</obo:IAO_0000115> contributions to biomedicine.</obo:IAO_0000112>
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An Award or Honor</obo:IAO_0000112> <obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/> <!-- check this -->
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Wiley Prize in Biomedical Sciences</obo:IAO_0000112> <obo:IAO_0000115 xml:lang="en">A recognition of outstanding work or action.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">The ObjectProperty relates is used to associate an Award with an AwardReceipt. A preferred
approach would be to recognize the AwardReceipt as an information artifact which is the output of the Award process.
The award receipt is about the recipient of the award. This would eliminate the use of relates and relatedBy in the
representation of Awards and AwardReceipts, provide correct subsumption, and avoid the use of vivo:Relationship. We
could then rename AwardReceipt to Award (!) and Award to AwardProcess to reflect their natures (this is why ontologies use numbered
class names -- to avoid renaming)
</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Michael Conlon</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Merriam Webster (https://www.merriam-webster.com/dictionary/award)</obo:IAO_0000119>
</owl:Class> </owl:Class>
@ -9241,7 +9264,19 @@ This class allows for linking an author to a publication while indicating inform
<owl:Class rdf:about="http://vivoweb.org/ontology/core#Credential"> <owl:Class rdf:about="http://vivoweb.org/ontology/core#Credential">
<rdfs:label xml:lang="en">Credential</rdfs:label> <rdfs:label xml:lang="en">Credential</rdfs:label>
<rdfs:subClassOf rdf:resource="http://www.w3.org/2004/02/skos/core#Concept"/> <obo:IAO_0000112 xml:lang="en">A driver's license is the result of a credentialing process</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/> <!-- check this -->
<obo:IAO_0000115 xml:lang="en">An attestation of qualification, competence, or authority issued to an individual by a third
party with a relevant or de facto authority or assumed competence to do so.</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">The ObjectProperty relates is used to associate a Credential with an IssuedCredential. A preferred
approach would be to recognize the IssuedCredential as an information artifact which is the output of the Credential process.
The IssuedCredential is about the recipient of the issued credential. This would eliminate the use of relates and relatedBy in the
representation of Credentials and IssuedCredentials, provide correct subsumption, and avoid the use of vivo:Relationship. We could
then rename IssuedCredential to Credential (!) and Credential to CredentialingProcess which would reflect their true nature. Other
ontologies used numbered class names to avoid the need to rename in such cases.
</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Michael Conlon</obo:IAO_0000117>
<obo:IAO_0000119 xml:lang="en">Merriam Webster (https://www.merriam-webster.com/dictionary/credential)</obo:IAO_0000119>
<rdfs:subClassOf> <rdfs:subClassOf>
<owl:Restriction> <owl:Restriction>
<owl:onProperty rdf:resource="http://vivoweb.org/ontology/core#hasGoverningAuthority"/> <owl:onProperty rdf:resource="http://vivoweb.org/ontology/core#hasGoverningAuthority"/>
@ -9260,8 +9295,6 @@ This class allows for linking an author to a publication while indicating inform
<owl:allValuesFrom rdf:resource="http://www.w3.org/2002/07/owl#Thing"/> <owl:allValuesFrom rdf:resource="http://www.w3.org/2002/07/owl#Thing"/>
</owl:Restriction> </owl:Restriction>
</rdfs:subClassOf> </rdfs:subClassOf>
<obo:IAO_0000112 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An attestation of qualification, competence, or authority issued to an individual by a third party with a relevant or de facto authority or assumed competence to do so.</obo:IAO_0000112>
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">An attestation of qualification, competence, or authority issued to an individual by a third party with a relevant or de facto authority or assumed competence to do so.</obo:IAO_0000115>
</owl:Class> </owl:Class>
@ -9324,9 +9357,13 @@ This class allows for linking an author to a publication while indicating inform
<!-- http://vivoweb.org/ontology/core#DateTimeValuePrecision --> <!-- http://vivoweb.org/ontology/core#DateTimeValuePrecision -->
<owl:Class rdf:about="http://vivoweb.org/ontology/core#DateTimeValuePrecision"> <owl:Class rdf:about="http://vivoweb.org/ontology/core#DateTimeValuePrecision">
<rdfs:label xml:lang="en">Date/Time Value Precision</rdfs:label> <rdfs:label xml:lang="en">DateTime Value Precision</rdfs:label>
<rdfs:subClassOf rdf:resource="http://www.w3.org/2004/02/skos/core#Concept"/> <rdfs:subClassOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000019"/> <!-- quality -->
<obo:IAO_0000115 rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Indicates the precision of the value of a DateTimeValue instance.</obo:IAO_0000115> <obo:IAO_0000112 xml:lang="en">A dateTimeValue may have yearDateTimePrecision indicating that only the year is known.</obo:IAO_0000112>
<obo:IAO_0000114 rdf:resource="http://purl.obolibrary.org/obo/IAO_0000120"/> <!-- check this -->
<obo:IAO_0000115 xml:lang="en">The precision of a DateTimeValue</obo:IAO_0000115>
<obo:IAO_0000116 xml:lang="en">DateTimeValuePrecisions are represented as individuals of this class.</obo:IAO_0000116>
<obo:IAO_0000117 xml:lang="en">PERSON: Michael Conlon</obo:IAO_0000117>
</owl:Class> </owl:Class>