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updates for concept semantic type in external vocab search

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hudajkhan 2013-09-04 12:21:54 -04:00
parent 508f88a7c5
commit 14ddc38177
2 changed files with 66 additions and 14 deletions
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70
src/edu/cornell/mannlib/vitro/webapp/edit/n3editing/configuration/generators/AddAssociatedConceptGenerator.java
View file

@ -17,8 +17,16 @@ import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory; import org.apache.commons.logging.LogFactory;
import com.hp.hpl.jena.ontology.OntModel; import com.hp.hpl.jena.ontology.OntModel;
import com.hp.hpl.jena.query.Query;
import com.hp.hpl.jena.query.QueryExecution;
import com.hp.hpl.jena.query.QueryExecutionFactory;
import com.hp.hpl.jena.query.QueryFactory;
import com.hp.hpl.jena.query.QuerySolution;
import com.hp.hpl.jena.query.ResultSet;
import com.hp.hpl.jena.rdf.model.Literal; import com.hp.hpl.jena.rdf.model.Literal;
import com.hp.hpl.jena.rdf.model.Model; import com.hp.hpl.jena.rdf.model.Model;
import com.hp.hpl.jena.rdf.model.Resource;
import com.hp.hpl.jena.vocabulary.OWL;
import com.hp.hpl.jena.vocabulary.RDF; import com.hp.hpl.jena.vocabulary.RDF;
import com.hp.hpl.jena.vocabulary.RDFS; import com.hp.hpl.jena.vocabulary.RDFS;
import com.hp.hpl.jena.vocabulary.XSD; import com.hp.hpl.jena.vocabulary.XSD;
@ -34,6 +42,7 @@ import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.EditConfigurationUti
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.EditConfigurationVTwo; import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.EditConfigurationVTwo;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.fields.FieldVTwo; import edu.cornell.mannlib.vitro.webapp.edit.n3editing.VTwo.fields.FieldVTwo;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.AddAssociatedConceptsPreprocessor; import edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.AddAssociatedConceptsPreprocessor;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.preprocessors.ConceptSemanticTypesPreprocessor;
import edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.validators.AntiXssValidation; import edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.validators.AntiXssValidation;
import edu.cornell.mannlib.vitro.webapp.utils.ConceptSearchService.ConceptSearchServiceUtils; import edu.cornell.mannlib.vitro.webapp.utils.ConceptSearchService.ConceptSearchServiceUtils;
/** /**
@ -86,7 +95,9 @@ public class AddAssociatedConceptGenerator extends VivoBaseGenerator implements
setTemplate(editConfiguration, vreq); setTemplate(editConfiguration, vreq);
// No validators required here // No validators required here
// Add preprocessors // Add preprocessors
addPreprocessors(editConfiguration, ModelAccess.on(vreq).getJenaOntModel()); addPreprocessors(editConfiguration,
ModelAccess.on(vreq).getJenaOntModel(),
ModelAccess.on(vreq).getOntModelSelector().getTBoxModel());
// Adding additional data, specifically edit mode // Adding additional data, specifically edit mode
addFormSpecificData(editConfiguration, vreq); addFormSpecificData(editConfiguration, vreq);
// One override for basic functionality, changing url pattern // One override for basic functionality, changing url pattern
@ -324,7 +335,7 @@ public class AddAssociatedConceptGenerator extends VivoBaseGenerator implements
//Add preprocessor //Add preprocessor
private void addPreprocessors(EditConfigurationVTwo editConfiguration, OntModel ontModel) { private void addPreprocessors(EditConfigurationVTwo editConfiguration, OntModel ontModel, OntModel modelChangeModel) {
//An Edit submission preprocessor for enabling addition of multiple terms for a single search //An Edit submission preprocessor for enabling addition of multiple terms for a single search
//TODO: Check if this is the appropriate way of getting model //TODO: Check if this is the appropriate way of getting model
@ -332,6 +343,8 @@ public class AddAssociatedConceptGenerator extends VivoBaseGenerator implements
editConfiguration.addEditSubmissionPreprocessor( editConfiguration.addEditSubmissionPreprocessor(
new AddAssociatedConceptsPreprocessor(editConfiguration, ontModel)); new AddAssociatedConceptsPreprocessor(editConfiguration, ontModel));
editConfiguration.addModelChangePreprocessor(new ConceptSemanticTypesPreprocessor(
modelChangeModel));
} }
@ -417,14 +430,15 @@ public class AddAssociatedConceptGenerator extends VivoBaseGenerator implements
String conceptSemanticTypeURI = null; String conceptSemanticTypeURI = null;
String conceptSemanticTypeLabel = null; String conceptSemanticTypeLabel = null;
//Can a concept have multiple semantic types? Currently we are only returning the first one //Can a concept have multiple semantic types? Currently we are only returning the first one
//TODO: Change this into a sparql query that returns all types for the concept that are subclasses of SKOS concepts
HashMap<String, String> typeAndLabel = this.getConceptSemanticTypeQueryResults(conceptIndividual.getURI(), ModelAccess.on(vreq).getJenaOntModel());
if(typeAndLabel.containsKey("semanticTypeURI")) {
conceptSemanticTypeURI = typeAndLabel.get("semanticTypeURI");
}
if(typeAndLabel.containsKey("semanticTypeLabel")) {
conceptSemanticTypeLabel = typeAndLabel.get("semanticTypeLabel");
}
List<ObjectPropertyStatement> semanticTypeStatements = conceptIndividual.getObjectPropertyStatements(VIVOCore + "hasConceptSemanticType");
if(semanticTypeStatements.size() > 0) {
conceptSemanticTypeURI = semanticTypeStatements.get(0).getObjectURI();
Individual conceptSemanticTypeIndividual = EditConfigurationUtils.getIndividual(vreq, conceptSemanticTypeURI);
conceptSemanticTypeLabel = conceptSemanticTypeIndividual.getName();
}
//get label
//Assuming this is from an external vocabulary source //Assuming this is from an external vocabulary source
info.add(new AssociatedConceptInfo(conceptLabel, conceptUri, vocabSource, vocabLabel, null, conceptSemanticTypeURI, conceptSemanticTypeLabel)); info.add(new AssociatedConceptInfo(conceptLabel, conceptUri, vocabSource, vocabLabel, null, conceptSemanticTypeURI, conceptSemanticTypeLabel));
@ -434,6 +448,44 @@ public class AddAssociatedConceptGenerator extends VivoBaseGenerator implements
return info; return info;
} }
private HashMap<String, String> getConceptSemanticTypeQueryResults(String conceptURI, OntModel ontModel) {
HashMap<String, String> typeAndLabel = new HashMap<String, String>();
String queryStr = "SELECT ?semanticTypeURI ?semanticTypeLabel WHERE { " +
"<" + conceptURI + "> <" + RDF.type.getURI() + "> ?semanticTypeURI . " +
"?semanticTypeURI <" + RDFS.subClassOf.getURI() + "> <" + this.SKOSConceptType + ">. " +
"?semanticTypeURI <" + RDFS.label.getURI() + "> ?semanticTypeLabel ." +
"}";
QueryExecution qe = null;
try{
Query query = QueryFactory.create(queryStr);
qe = QueryExecutionFactory.create(query, ontModel);
ResultSet results = null;
results = qe.execSelect();
while( results.hasNext()){
QuerySolution qs = results.nextSolution();
if(qs.get("semanticTypeURI") != null) {
Resource semanticTypeURI = qs.getResource("semanticTypeURI");
log.debug("Semantic Type URI returned " + semanticTypeURI.getURI());
typeAndLabel.put("semanticTypeURI", semanticTypeURI.getURI());
}
if(qs.get("semanticTypeLabel") != null) {
Literal semanticTypeLabel = qs.getLiteral("semanticTypeLabel");
log.debug("Semantic Type label returned " + semanticTypeLabel.getString());
typeAndLabel.put("semanticTypeLabel", semanticTypeLabel.getString());
}
}
}catch(Exception ex){
throw new Error("Error in executing query string: \n" + queryStr + '\n' + ex.getMessage());
}finally{
if( qe != null)
qe.close();
}
return typeAndLabel;
}
public class AssociatedConceptInfo { public class AssociatedConceptInfo {
private String conceptLabel; private String conceptLabel;
private String conceptURI; private String conceptURI;

10
src/edu/cornell/mannlib/vitro/webapp/edit/n3editing/configuration/preprocessors/AddAssociatedConceptsPreprocessor.java
View file

@ -21,6 +21,7 @@ import com.hp.hpl.jena.query.QuerySolution;
import com.hp.hpl.jena.query.ResultSet; import com.hp.hpl.jena.query.ResultSet;
import com.hp.hpl.jena.rdf.model.Literal; import com.hp.hpl.jena.rdf.model.Literal;
import com.hp.hpl.jena.rdf.model.Resource; import com.hp.hpl.jena.rdf.model.Resource;
import com.hp.hpl.jena.vocabulary.OWL;
import com.hp.hpl.jena.vocabulary.RDF; import com.hp.hpl.jena.vocabulary.RDF;
import com.hp.hpl.jena.vocabulary.RDFS; import com.hp.hpl.jena.vocabulary.RDFS;
import com.hp.hpl.jena.vocabulary.XSD; import com.hp.hpl.jena.vocabulary.XSD;
@ -469,10 +470,9 @@ public class AddAssociatedConceptsPreprocessor extends
n3String += node + " <" + RDFS.label.getURI() + "> " + label + " .\n" + n3String += node + " <" + RDFS.label.getURI() + "> " + label + " .\n" +
node + " <" + RDFS.isDefinedBy.getURI() + "> " + source + " ."; node + " <" + RDFS.isDefinedBy.getURI() + "> " + source + " .";
String n3ConceptTypeString = prefixStr; String n3ConceptTypeString = prefixStr;
n3ConceptTypeString += node + " core:hasConceptSemanticType " + conceptSemanticTypeURI + " ." + n3ConceptTypeString += node + " <" + RDF.type.getURI() + "> " + conceptSemanticTypeURI + " ." +
conceptSemanticTypeURI + " core:isConceptSemanticTypeOf " + node + ". " + conceptSemanticTypeURI + " <" + RDFS.label.getURI() + "> " + conceptSemanticTypeLabel + " .\n" +
conceptSemanticTypeURI + " <" + RDFS.label.getURI() + "> " + conceptSemanticTypeLabel + " .\n" + conceptSemanticTypeURI + " <" + RDFS.subClassOf.getURI() + "> <http://www.w3.org/2004/02/skos/core#Concept> .\n" ;
conceptSemanticTypeURI + " <" + RDF.type.getURI() + "> core:ConceptSemanticType .\n" ;
n3Optional.add(n3String); n3Optional.add(n3String);
//adding separately so their resolution does not depend on each other //adding separately so their resolution does not depend on each other
@ -630,7 +630,7 @@ public class AddAssociatedConceptsPreprocessor extends
} }
private String getExistingSemanticTypeURI(String label) { private String getExistingSemanticTypeURI(String label) {
String queryStr = "SELECT ?semanticType WHERE { ?semanticType <" + RDF.type.getURI() + "> <http://vivoweb.org/ontology/core#ConceptSemanticType> . " + String queryStr = "SELECT ?semanticType WHERE { ?semanticType <" + RDF.type.getURI() + "> <" + OWL.Class.getURI() + "> . " +
"?semanticType <" + RDFS.label.getURI() + "> \"" + label + "\"^^<http://www.w3.org/2001/XMLSchema#string> . }"; "?semanticType <" + RDFS.label.getURI() + "> \"" + label + "\"^^<http://www.w3.org/2001/XMLSchema#string> . }";
QueryExecution qe = null; QueryExecution qe = null;
try{ try{