From 15c59932ddd809e23b68c49a218366064a98b779 Mon Sep 17 00:00:00 2001 From: brianjlowe Date: Thu, 14 Nov 2013 09:52:11 -0500 Subject: [PATCH] VIVO-435 changed domain/range of cites/citedBy and removed odd individuals that came in with the ISF --- rdf/tbox/filegraph/object-properties.owl | 8 +- rdf/tbox/filegraph/research-resource-iao.owl | 91 -------------------- rdf/tbox/firsttime/initialTBoxAnnotations.n3 | 57 ------------ 3 files changed, 4 insertions(+), 152 deletions(-) diff --git a/rdf/tbox/filegraph/object-properties.owl b/rdf/tbox/filegraph/object-properties.owl index f61d226f..9f352dd2 100644 --- a/rdf/tbox/filegraph/object-properties.owl +++ b/rdf/tbox/filegraph/object-properties.owl @@ -1141,8 +1141,8 @@ there is a measurement process p that has specified output m, a measurement datu - - + + @@ -1150,8 +1150,8 @@ there is a measurement process p that has specified output m, a measurement datu - - + + diff --git a/rdf/tbox/filegraph/research-resource-iao.owl b/rdf/tbox/filegraph/research-resource-iao.owl index f547f619..fd99cd3b 100644 --- a/rdf/tbox/filegraph/research-resource-iao.owl +++ b/rdf/tbox/filegraph/research-resource-iao.owl @@ -240,36 +240,6 @@ this case we explicitly refer to the singular form - - - - - - - - - - - - - - - - - - - - - Better to represent curation as a process with parts and then relate labels to that process (in IAO meeting) - GROUP:OBI:<http://purl.obolibrary.org/obo/obi> - OBI_0000266 - PERSON:Bill Bug - The curation status of the term. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. - curation status specification - - - - @@ -335,31 +305,6 @@ this case we explicitly refer to the singular form - - - - - - - - - - - - - - - - - PERSON: Alan Ruttenberg - PERSON: Melanie Courtot - The creation of this class has been inspired in part by Werner Ceusters' paper, Applying evolutionary terminology auditing to the Gene Ontology. - The reason for which a term has been deprecated. The allowed values come from an enumerated list of predefined terms. See the specification of these instances for more detailed definitions of each enumerated value. - obsolescence reason specification - - - - @@ -377,27 +322,6 @@ this case we explicitly refer to the singular form - - - - - - - - - - - - - - - A denotator type indicates how a term should be interpreted from an ontological perspective. - Alan Ruttenberg - Barry Smith, Werner Ceusters - The Basic Formal Ontology ontology makes a distinction between Universals and defined classes, where the formal are "natural kinds" and the latter arbitrary collections of entities. - - - @@ -421,21 +345,6 @@ this case we explicitly refer to the singular form - - - - - - - - - - - - - - - diff --git a/rdf/tbox/firsttime/initialTBoxAnnotations.n3 b/rdf/tbox/firsttime/initialTBoxAnnotations.n3 index 079ab8c4..70ca6ef5 100644 --- a/rdf/tbox/firsttime/initialTBoxAnnotations.n3 +++ b/rdf/tbox/firsttime/initialTBoxAnnotations.n3 @@ -275,9 +275,6 @@ vivo:Licensure vivo:inPress rdfs:label "in press"@en-US . -obo:IAO_0000078 - rdfs:label "Curation Status Specification"@en-US . - vivo:placeOfPublication rdfs:label "place of publication"@en-US ; vitro:displayLimitAnnot @@ -293,9 +290,6 @@ vivo:placeOfPublication vitro:publicDescriptionAnnot "City in which the publication was done."^^xsd:string . -obo:IAO_0000125 - rdfs:label "pending final vetting"@en-US . - vivo:hasCollaborator rdfs:label "collaborator"@en-US ; vitro:customEntryFormAnnot @@ -502,9 +496,6 @@ owl:sameAs vitro:stubObjectPropertyAnnot "true"^^xsd:boolean . -obo:IAO_0000123 - rdfs:label "metadata incomplete"@en-US . - vcard:hasTimeZone rdfs:label "has time zone"@en-US . @@ -560,9 +551,6 @@ geo:territory vitro:prohibitedFromUpdateBelowRoleLevelAnnot . -obo:IAO_0000122 - rdfs:label "ready for release"@en-US . - vcard:OrganizationName rdfs:label "Organization Name"@en-US . @@ -722,9 +710,6 @@ bibo:Issue vitro:prohibitedFromUpdateBelowRoleLevelAnnot . -obo:IAO_0000121 - rdfs:label "organizational term"@en-US . - vcard:uid rdfs:label "uid"@en-US . @@ -816,9 +801,6 @@ geo:codeFAOSTAT vitro:selectFromExistingAnnot "true"^^xsd:boolean . -obo:IAO_0000120 - rdfs:label "metadata complete"@en-US . - vivo:AttendeeRole rdfs:label "Attendee Role"@en-US ; vitro:displayLimitAnnot @@ -1754,9 +1736,6 @@ geo:nameCurrencyFR obo:BFO_0000017 rdfs:label "Realizable Entity"@en-US . -obo:IAO_0000410 - rdfs:label "universal"@en-US . - vivo:hasGoverningAuthority rdfs:label "governing authority"@en-US ; vitro:displayLimitAnnot @@ -2009,9 +1988,6 @@ vcard:note obo:ERO_0000779 rdfs:label "Permanent Resident Role"@en-US . -obo:IAO_0000226 - rdfs:label "placeholder removed"@en-US . - bibo:issue rdfs:label "issue"@en-US ; vitro:displayLimitAnnot @@ -2267,9 +2243,6 @@ vivo:description vitro:publicDescriptionAnnot "An account of the resource."^^xsd:string . -obo:IAO_0000224 - rdfs:label "core"@en-US . - geo:hasCode rdfs:label "has code"@en-US ; vitro:hiddenFromDisplayBelowRoleLevelAnnot @@ -2401,9 +2374,6 @@ vivo:hasSubjectArea obo:ARG_2000083 rdfs:label "American Board of Plastic Surgery"@en-US . -obo:IAO_0000225 - rdfs:label "Obsolescence Reason Specification"@en-US . - obo:ERO_0000398 rdfs:label "is performed by"@en-US . @@ -2715,9 +2685,6 @@ vivo:ClinicalOrganization vitro:prohibitedFromUpdateBelowRoleLevelAnnot . -obo:IAO_0000229 - rdfs:label "term split"@en-US . - vivo:Program rdfs:label "Program"@en-US ; vitro:displayLimitAnnot @@ -2831,9 +2798,6 @@ obo:ERO_0000777 obo:ARG_2000067 rdfs:label "American Board of Colon and Rectal Surgery"@en-US . -obo:IAO_0000228 - rdfs:label "term imported"@en-US . - bibo:Thesis rdfs:label "Thesis"@en-US ; vitro:displayLimitAnnot @@ -4430,9 +4394,6 @@ vivo:FacultyMember vitro:prohibitedFromUpdateBelowRoleLevelAnnot . -obo:IAO_0000428 - rdfs:label "requires discussion"@en-US . - vivo:hideFromDisplay rdfs:label "hide from display"@en-US ; vitro:displayRankAnnot @@ -4598,9 +4559,6 @@ vivo:Internship obo:ARG_2000379 rdfs:label "Contact"@en-US . -obo:IAO_0000409 - rdfs:label "Denotator Type"@en-US . - vcard:RelatedType rdfs:label "Relation Type"@en-US . @@ -4807,9 +4765,6 @@ vivo:InvestigatorRole vitro:prohibitedFromUpdateBelowRoleLevelAnnot . -obo:IAO_0000423 - rdfs:label "to be replaced with external ontology term"@en-US . - bibo:BookSection rdfs:label "Book Section"@en-US ; vitro:displayLimitAnnot @@ -5563,9 +5518,6 @@ geo:special_group vitro:prohibitedFromUpdateBelowRoleLevelAnnot . -obo:IAO_0000420 - rdfs:label "Defined Class"@en-US . - geo:countryAreaUnit rdfs:label "country area unit"@en-US ; vitro:hiddenFromDisplayBelowRoleLevelAnnot @@ -5789,9 +5741,6 @@ bibo:eanucc13 vitro:publicDescriptionAnnot "EAN International-Uniform Code Council (EAN-UCC) was a supply chain standards family name, formally the EAN.UCC System, that included product barcodes which are printed on the great majority of products available in stores worldwide and electronic commerce standards."^^xsd:string . -obo:IAO_0000421 - rdfs:label "Named Class Expression"@en-US . - bibo:EditedBook rdfs:label "Edited Book"@en-US ; vitro:displayLimitAnnot @@ -6576,9 +6525,6 @@ vivo:dateTimeInterval vitro:selectFromExistingAnnot "true"^^xsd:boolean . -obo:IAO_0000103 - rdfs:label "Failed Exploratory Term"@en-US . - vcard:formattedName rdfs:label "has formatted name"@en-US . @@ -6613,9 +6559,6 @@ obo:ARG_2000076 obo:BFO_0000034 rdfs:label "Function"@en-US . -obo:IAO_0000002 - rdfs:label "example to be eventually removed"@en-US . - vivo:EmeritusProfessor rdfs:label "Professor Emeritus"@en-US ; vitro:displayLimitAnnot