[VIVO-1270] Initial commit of Jena 3
This commit is contained in:
Graham Triggs
parent
47f1408b3e
commit
1865b525b8
101 changed files with 416 additions and 892 deletions
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@ -1557,11 +1557,6 @@
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<taglib-location>/WEB-INF/tlds/vitroForm.tld</taglib-location>
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</taglib>
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<taglib>
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<taglib-uri>http://mannlib.cornell.edu/vitro/ListSparqlTag/0.1/</taglib-uri>
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<taglib-location>/WEB-INF/tlds/ListSparqlTag.tld</taglib-location>
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</taglib>
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<taglib>
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<taglib-uri>http://jakarta.apache.org/taglibs/string-1.1</taglib-uri>
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<taglib-location>/WEB-INF/tlds/taglibs-string.tld</taglib-location>
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@ -1,456 +0,0 @@
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<%-- $This file is distributed under the terms of the license in /doc/license.txt$ --%>
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<%@ taglib uri="http://java.sun.com/jsp/jstl/core" prefix="c" %>
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<%@ taglib uri="http://java.sun.com/jsp/jstl/functions" prefix="fn" %>
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<%@ taglib uri="http://djpowell.net/tmp/sparql-tag/0.1/" prefix="sparql" %>
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<%@ taglib uri="http://jakarta.apache.org/taglibs/string-1.1" prefix="str" %>
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<%@ page import="java.net.URLDecoder" %>
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<%@ page import="edu.cornell.mannlib.vitro.webapp.modelaccess.ModelAccess"%>
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<% request.setAttribute("jenaOntModel", ModelAccess.on(getServletContext()).getOntModel()); %>
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<div id="content">
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<h2>Linkage Information</h2>
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<ul>
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<!--
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Author-Resource
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-->
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<sparql:lock model="${jenaOntModel }">
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<sparql:sparql>
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<sparql:select model="${jenaOntModel}" var="inforauthorships">
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX akt: <http://www.aktors.org/ontology/portal#>
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PREFIX bibo: <http://purl.org/ontology/bibo/>
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PREFIX core: <http://vivoweb.org/ontology/core#>
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PREFIX obo: <http://purl.obolibrary.org/obo/>
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SELECT (count(?author) as ?counts) WHERE {
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?author rdf:type core:Authorship .
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?author core:relates ?infor .
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?infor rdf:type obo:IAO_0000030 .
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}
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</sparql:select>
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<c:forEach items="${inforauthorships.rows}" var="inforauthorship" varStatus="counter">
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<li><a href="#">'Person'-'InformationResource' linkages</a> (${inforauthorship.counts.string})</li>
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</c:forEach>
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</sparql:sparql>
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</sparql:lock>
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<sparql:lock model="${jenaOntModel }">
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<sparql:sparql>
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<sparql:select model="${jenaOntModel}" var="inforauthors">
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX akt: <http://www.aktors.org/ontology/portal#>
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PREFIX foaf: <http://xmlns.com/foaf/0.1/>
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PREFIX bibo: <http://purl.org/ontology/bibo/>
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PREFIX core: <http://vivoweb.org/ontology/core#>
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PREFIX obo: <http://purl.obolibrary.org/obo/>
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SELECT (count(distinct ?author) as ?counts) WHERE {
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?author core:relatedBy ?obj .
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?author rdf:type foaf:Person .
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?obj rdf:type core:Authorship .
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?obj core:relates ?infor .
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?infor rdf:type obo:IAO_0000030 .
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}
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</sparql:select>
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<c:forEach items="${inforauthors.rows}" var="inforauthor" varStatus="counter">
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<li><a href="#">'Person' entities which published 'InformationResource' entities</a> (${inforauthor.counts.string})</li>
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</c:forEach>
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</sparql:sparql>
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</sparql:lock>
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<sparql:lock model="${jenaOntModel }">
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<sparql:sparql>
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<sparql:select model="${jenaOntModel}" var="infors">
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX akt: <http://www.aktors.org/ontology/portal#>
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PREFIX bibo: <http://purl.org/ontology/bibo/>
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PREFIX core: <http://vivoweb.org/ontology/core#>
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PREFIX obo: <http://purl.obolibrary.org/obo/>
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SELECT (count(distinct ?infor) as ?counts) WHERE {
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?subj core:relates ?infor .
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?infor rdf:type obo:IAO_0000030 .
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}
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</sparql:select>
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<c:forEach items="${infors.rows}" var="infor" varStatus="counter">
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<li><a href="#">'InformationResource' entities</a> (${infor.counts.string})</li>
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</c:forEach>
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</sparql:sparql>
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</sparql:lock>
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</ul>
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<ul>
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<!--
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Author-Conference_Paper
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-->
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<sparql:lock model="${jenaOntModel }">
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<sparql:sparql>
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<sparql:select model="${jenaOntModel}" var="confauthorships">
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX akt: <http://www.aktors.org/ontology/portal#>
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PREFIX bibo: <http://purl.org/ontology/bibo/>
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PREFIX core: <http://vivoweb.org/ontology/core#>
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SELECT (count(?author) as ?counts) WHERE {
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?author rdf:type core:Authorship .
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?author core:relates ?infor .
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?infor rdf:type core:ConferencePaper .
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}
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</sparql:select>
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<c:forEach items="${confauthorships.rows}" var="confauthorship" varStatus="counter">
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<li><a href="#">'Person'-'ConferencePaper' linkages</a> (${confauthorship.counts.string})</li>
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</c:forEach>
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</sparql:sparql>
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</sparql:lock>
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<sparql:lock model="${jenaOntModel }">
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<sparql:sparql>
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<sparql:select model="${jenaOntModel}" var="confauthors">
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX akt: <http://www.aktors.org/ontology/portal#>
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PREFIX foaf: <http://xmlns.com/foaf/0.1/>
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PREFIX bibo: <http://purl.org/ontology/bibo/>
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PREFIX core: <http://vivoweb.org/ontology/core#>
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SELECT (count(distinct ?author) as ?counts) WHERE {
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?author core:relatedBy ?obj .
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?author rdf:type foaf:Person .
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?obj rdf:type core:Authorship .
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?obj core:relates ?infor .
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?infor rdf:type core:ConferencePaper .
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}
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</sparql:select>
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<c:forEach items="${confauthors.rows}" var="confauthor" varStatus="counter">
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<li><a href="#">'Person' entities which published 'ConferencePaper' entities</a> (${confauthor.counts.string})</li>
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</c:forEach>
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</sparql:sparql>
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</sparql:lock>
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<sparql:lock model="${jenaOntModel }">
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<sparql:sparql>
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<sparql:select model="${jenaOntModel}" var="confs">
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX akt: <http://www.aktors.org/ontology/portal#>
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PREFIX bibo: <http://purl.org/ontology/bibo/>
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PREFIX core: <http://vivoweb.org/ontology/core#>
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SELECT (count(distinct ?infor) as ?counts) WHERE {
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?subj core:relates ?infor .
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?infor rdf:type core:ConferencePaper .
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}
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</sparql:select>
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<c:forEach items="${confs.rows}" var="conf" varStatus="counter">
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<li><a href="#">'ConferencePaper' entities</a> (${conf.counts.string})</li>
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</c:forEach>
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</sparql:sparql>
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</sparql:lock>
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</ul>
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<ul>
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<!--
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Author-Academic_Article
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-->
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<sparql:lock model="${jenaOntModel }">
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<sparql:sparql>
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<sparql:select model="${jenaOntModel}" var="acaauthorships">
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX akt: <http://www.aktors.org/ontology/portal#>
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PREFIX bibo: <http://purl.org/ontology/bibo/>
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PREFIX core: <http://vivoweb.org/ontology/core#>
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SELECT (count(?author) as ?counts) WHERE {
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?author rdf:type core:Authorship .
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?author core:relates ?infor .
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?infor rdf:type bibo:AcademicArticle .
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}
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</sparql:select>
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<c:forEach items="${acaauthorships.rows}" var="acaauthorship" varStatus="counter">
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<li><a href="#">'Person'-'AcademicArticle' linkages</a> (${acaauthorship.counts.string})</li>
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</c:forEach>
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</sparql:sparql>
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</sparql:lock>
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<sparql:lock model="${jenaOntModel }">
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<sparql:sparql>
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<sparql:select model="${jenaOntModel}" var="acaauthors">
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX akt: <http://www.aktors.org/ontology/portal#>
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PREFIX foaf: <http://xmlns.com/foaf/0.1/>
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PREFIX bibo: <http://purl.org/ontology/bibo/>
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PREFIX core: <http://vivoweb.org/ontology/core#>
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SELECT (count(distinct ?author) as ?counts) WHERE {
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?author core:relatedBy ?obj .
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?author rdf:type foaf:Person .
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?obj rdf:type core:Authorship .
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?obj core:relates ?infor .
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?infor rdf:type bibo:AcademicArticle .
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}
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</sparql:select>
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<c:forEach items="${acaauthors.rows}" var="acaauthor" varStatus="counter">
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<li><a href="#">'Person' entities which published 'AcademicArticle' entities</a> (${acaauthor.counts.string})</li>
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</c:forEach>
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</sparql:sparql>
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</sparql:lock>
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<sparql:lock model="${jenaOntModel }">
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<sparql:sparql>
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<sparql:select model="${jenaOntModel}" var="acas">
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX akt: <http://www.aktors.org/ontology/portal#>
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PREFIX bibo: <http://purl.org/ontology/bibo/>
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PREFIX core: <http://vivoweb.org/ontology/core#>
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SELECT (count(distinct ?infor) as ?counts) WHERE {
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?subj core:relates ?infor .
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?infor rdf:type bibo:AcademicArticle .
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}
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</sparql:select>
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<c:forEach items="${acas.rows}" var="aca" varStatus="counter">
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<li><a href="#">'AcademicArticle' entities</a> (${aca.counts.string})</li>
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</c:forEach>
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</sparql:sparql>
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</sparql:lock>
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</ul>
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<ul>
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<!--
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Investigator-Grant
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-->
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<sparql:lock model="${jenaOntModel }">
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<sparql:sparql>
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<sparql:select model="${jenaOntModel}" var="piships">
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX akt: <http://www.aktors.org/ontology/portal#>
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PREFIX bibo: <http://purl.org/ontology/bibo/>
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PREFIX core: <http://vivoweb.org/ontology/core#>
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SELECT (count(*) as ?counts) WHERE {
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?grant core:relates ?pi .
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?grant rdf:type core:Grant .
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?pi rdf:type core:InvestigatorRole .
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}
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</sparql:select>
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<c:forEach items="${piships.rows}" var="piship" varStatus="counter">
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<li><a href="#">'Person'-'Grant' linkages</a> (${piship.counts.string})</li>
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</c:forEach>
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</sparql:sparql>
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</sparql:lock>
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<sparql:lock model="${jenaOntModel }">
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<sparql:sparql>
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<sparql:select model="${jenaOntModel}" var="pis">
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX akt: <http://www.aktors.org/ontology/portal#>
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PREFIX bibo: <http://purl.org/ontology/bibo/>
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PREFIX core: <http://vivoweb.org/ontology/core#>
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SELECT (count(distinct ?pi) as ?counts) WHERE {
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?grant core:relates ?pi .
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?grant rdf:type core:Grant .
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?pi rdf:type core:InvestigatorRole .
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}
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</sparql:select>
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<c:forEach items="${pis.rows}" var="pi" varStatus="counter">
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<li><a href="#">'Person' entities which are (co-)investigators on 'Grant' entities</a> (${pi.counts.string})</li>
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</c:forEach>
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</sparql:sparql>
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</sparql:lock>
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<sparql:lock model="${jenaOntModel }">
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<sparql:sparql>
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<sparql:select model="${jenaOntModel}" var="grants">
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX akt: <http://www.aktors.org/ontology/portal#>
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PREFIX bibo: <http://purl.org/ontology/bibo/>
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PREFIX core: <http://vivoweb.org/ontology/core#>
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SELECT (count(distinct ?grant) as ?counts) WHERE {
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?grant rdf:type core:Grant .
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}
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</sparql:select>
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<c:forEach items="${grants.rows}" var="grant" varStatus="counter">
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<li><a href="#">'Grant' entities</a> (${grant.counts.string})</li>
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</c:forEach>
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</sparql:sparql>
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</sparql:lock>
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</ul>
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<ul>
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<!--
|
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Teacher-Course
|
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-->
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<sparql:lock model="${jenaOntModel }">
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<sparql:sparql>
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<sparql:select model="${jenaOntModel}" var="teachings">
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PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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PREFIX akt: <http://www.aktors.org/ontology/portal#>
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PREFIX bibo: <http://purl.org/ontology/bibo/>
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PREFIX core: <http://vivoweb.org/ontology/core#>
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PREFIX obo: <http://purl.obolibrary.org/obo/>
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SELECT (count(*) as ?counts) WHERE {
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?teacher obo:RO_0000053 ?obj .
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?obj rdf:type core:teacherRole .
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}
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</sparql:select>
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<c:forEach items="${teachings.rows}" var="teaching" varStatus="counter">
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<li><a href="#">'Person'-'CourseSection' linkages</a> (${teaching.counts.string})</li>
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</c:forEach>
|
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</sparql:sparql>
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</sparql:lock>
|
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|
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<sparql:lock model="${jenaOntModel }">
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<sparql:sparql>
|
||||
<sparql:select model="${jenaOntModel}" var="teachers">
|
||||
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
|
||||
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
|
||||
PREFIX akt: <http://www.aktors.org/ontology/portal#>
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||||
PREFIX bibo: <http://purl.org/ontology/bibo/>
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PREFIX core: <http://vivoweb.org/ontology/core#>
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PREFIX obo: <http://purl.obolibrary.org/obo/>
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SELECT (count(distinct ?teacher) as ?counts) WHERE {
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?teacher core:teaching ?obj .
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?teacher obo:RO_0000053 ?obj .
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?obj rdf:type core:teacherRole .
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}
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||||
</sparql:select>
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<c:forEach items="${teachers.rows}" var="teacher" varStatus="counter">
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<li><a href="#">'Person' entities which teach 'CourseSection' entities</a> (${teacher.counts.string})</li>
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</c:forEach>
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</sparql:sparql>
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</sparql:lock>
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<sparql:lock model="${jenaOntModel }">
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<sparql:sparql>
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<sparql:select model="${jenaOntModel}" var="courses">
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||||
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
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||||
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
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||||
PREFIX akt: <http://www.aktors.org/ontology/portal#>
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||||
PREFIX bibo: <http://purl.org/ontology/bibo/>
|
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PREFIX core: <http://vivoweb.org/ontology/core#>
|
||||
SELECT (count(?course) as ?counts) WHERE {
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||||
?course rdf:type core:Course .
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||||
}
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</sparql:select>
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<c:forEach items="${courses.rows}" var="course" varStatus="counter">
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<li><a href="#">'Course' entities</a> (${course.counts.string})</li>
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</c:forEach>
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</sparql:sparql>
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</sparql:lock>
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</ul>
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|
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|
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<ul>
|
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<!--
|
||||
Co-Author Linkage
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||||
-->
|
||||
<sparql:lock model="${jenaOntModel }">
|
||||
<sparql:sparql>
|
||||
<sparql:select model="${jenaOntModel}" var="coauthors">
|
||||
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
|
||||
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
|
||||
PREFIX akt: <http://www.aktors.org/ontology/portal#>
|
||||
PREFIX bibo: <http://purl.org/ontology/bibo/>
|
||||
PREFIX core: <http://vivoweb.org/ontology/core#>
|
||||
PREFIX obo: <http://purl.obolibrary.org/obo/>
|
||||
SELECT (count(*) as ?counts) WHERE {
|
||||
?author1 rdf:type core:Authorship .
|
||||
?author2 rdf:type core:Authorship .
|
||||
?author1 core:relates ?infor .
|
||||
?author2 core:relates ?infor .
|
||||
?infor rdf:type obo:IAO_0000030 .
|
||||
FILTER (str(?author1) < str(?author2))
|
||||
}
|
||||
</sparql:select>
|
||||
<c:forEach items="${coauthors.rows}" var="coauthor" varStatus="counter">
|
||||
<li><a href="#">Total co-author linkages</a> (${coauthor.counts.string})</li>
|
||||
</c:forEach>
|
||||
</sparql:sparql>
|
||||
</sparql:lock>
|
||||
|
||||
<!--
|
||||
Distinct Co-Author Linkage
|
||||
-->
|
||||
<sparql:lock model="${jenaOntModel }">
|
||||
<sparql:sparql>
|
||||
<sparql:select model="${jenaOntModel}" var="discoauthors">
|
||||
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
|
||||
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
|
||||
PREFIX akt: <http://www.aktors.org/ontology/portal#>
|
||||
PREFIX bibo: <http://purl.org/ontology/bibo/>
|
||||
PREFIX core: <http://vivoweb.org/ontology/core#>
|
||||
PREFIX obo: <http://purl.obolibrary.org/obo/>
|
||||
SELECT DISTINCT ?author1 ?author2 WHERE {
|
||||
?author1 rdf:type core:Authorship .
|
||||
?author2 rdf:type core:Authorship .
|
||||
?author1 core:relates ?infor .
|
||||
?author2 core:relates ?infor .
|
||||
?infor rdf:type obo:IAO_0000030 .
|
||||
FILTER (str(?author1) < str(?author2))
|
||||
}
|
||||
</sparql:select>
|
||||
<li><a href="#">Unique co-author linkages</a> (${fn:length(discoauthors.rows)})</li>
|
||||
</sparql:sparql>
|
||||
</sparql:lock>
|
||||
</ul>
|
||||
|
||||
|
||||
<ul>
|
||||
<!--
|
||||
Co-Investigator Linkage
|
||||
-->
|
||||
<sparql:lock model="${jenaOntModel }">
|
||||
<sparql:sparql>
|
||||
<sparql:select model="${jenaOntModel}" var="copis">
|
||||
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
|
||||
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
|
||||
PREFIX akt: <http://www.aktors.org/ontology/portal#>
|
||||
PREFIX bibo: <http://purl.org/ontology/bibo/>
|
||||
PREFIX core: <http://vivoweb.org/ontology/core#>
|
||||
SELECT (count(*) as ?counts) WHERE {
|
||||
?grant core:relates ?pi1 .
|
||||
?pi1 rdf:type core:InvestigatorRole .
|
||||
?grant core:relates ?pi2 .
|
||||
?pi1 rdf:type core:InvestigatorRole .
|
||||
FILTER (str(?pi1) < str(?pi2))
|
||||
}
|
||||
</sparql:select>
|
||||
<c:forEach items="${copis.rows}" var="copi" varStatus="counter">
|
||||
<li><a href="#">Total co-investigator linkages</a> (${copi.counts.string})</li>
|
||||
</c:forEach>
|
||||
</sparql:sparql>
|
||||
</sparql:lock>
|
||||
|
||||
<!--
|
||||
Distinct Co-Investigator Linkage
|
||||
-->
|
||||
<sparql:lock model="${jenaOntModel }">
|
||||
<sparql:sparql>
|
||||
<sparql:select model="${jenaOntModel}" var="discopis">
|
||||
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
|
||||
PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
|
||||
PREFIX akt: <http://www.aktors.org/ontology/portal#>
|
||||
PREFIX bibo: <http://purl.org/ontology/bibo/>
|
||||
PREFIX core: <http://vivoweb.org/ontology/core#>
|
||||
SELECT DISTINCT ?pi1 ?pi2 WHERE {
|
||||
?grant core:relates ?pi1 .
|
||||
?pi1 rdf:type core:InvestigatorRole .
|
||||
?grant core:relates ?pi2 .
|
||||
?pi1 rdf:type core:InvestigatorRole .
|
||||
FILTER (str(?pi1) < str(?pi2))
|
||||
}
|
||||
</sparql:select>
|
||||
<li><a href="#">Unique co-investigator linkages</a> (${fn:length(discopis.rows)})</li>
|
||||
</sparql:sparql>
|
||||
</sparql:lock>
|
||||
|
||||
</ul>
|
||||
|
||||
</div>
|
||||
|
|
@ -1,15 +0,0 @@
|
|||
;; Object productMods/
|
||||
;; SEMANTICDB Tags save file
|
||||
(semanticdb-project-database-file "productMods/"
|
||||
:tables (list
|
||||
(semanticdb-table "counter.jsp"
|
||||
:major-mode 'html-mode
|
||||
:tags '(("Linkage Information" section (:members (("'Person'-'InformationResource' linkages" section nil nil [1329 2369]) ("'Person' entities which published 'InformationResource' entities" section nil nil [2369 3292]) ("'InformationResource' entities" section nil nil [3292 4292]) ("'Person'-'ConferencePaper' linkages" section nil nil [4292 5323]) ("'Person' entities which published 'ConferencePaper' entities" section nil nil [5323 6230]) ("'ConferencePaper' entities" section nil nil [6230 7222]) ("'Person'-'AcademicArticle' linkages" section nil nil [7222 8249]) ("'Person' entities which published 'AcademicArticle' entities" section nil nil [8249 9152]) ("'AcademicArticle' entities" section nil nil [9152 10007]) ("'Person'-'Grant' linkages" section nil nil [10007 10849]) ("'Person' entities which are (co-)investigators on 'Grant' entities" section nil nil [10849 11691]) ("'Grant' entities" section nil nil [11691 12527]) ("'Person'-'CourseSection' linkages" section nil nil [12527 13358]) ("'Person' entities which teach 'CourseSection' entities" section nil nil [13358 14193]) ("'CourseSection' entities" section nil nil [14193 15236]) ("Total co-author linkages" section nil nil [15236 16200]) ("Unique co-author linkages" section nil nil [16200 17126]) ("Total co-investigator linkages" section nil nil [17126 18002]) ("Unique co-investigator linkages" section nil nil [18002 18005]))) nil [438 441]))
|
||||
:file "counter.jsp"
|
||||
:pointmax 18148
|
||||
)
|
||||
)
|
||||
:file "semantic.cache"
|
||||
:semantic-tag-version "2.0pre4"
|
||||
:semanticdb-version "2.0pre4"
|
||||
)
|
||||
Loading…
Add table
Add a link
Reference in a new issue