Updates for including termType as information to be displayed in custom list view as well as editing page (and added in the N3).
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dd44eeb314
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1c4d73da07
5 changed files with 78 additions and 41 deletions
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@ -9,11 +9,12 @@
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PREFIX core: <http://vivoweb.org/ontology/core#>
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PREFIX afn: <http://jena.hpl.hp.com/ARQ/function#>
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SELECT ?terminologyContextNode ?referencedTerm ?entryTerm ?termLabel WHERE {
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SELECT ?terminologyContextNode ?referencedTerm ?entryTerm ?termLabel ?termType WHERE {
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?subject ?property ?terminologyContextNode .
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?terminologyContextNode core:referencedTerm ?referencedTerm .
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?terminologyContextNode core:entryTerm ?entryTerm .
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?terminologyContextNode core:termLabel ?termLabel .
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?terminologyContextNode core:termType ?termType .
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} ORDER BY ?termLabel
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@ -27,13 +28,14 @@
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?terminologyContextNode core:referencedTerm ?referencedTerm .
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?terminologyContextNode core:entryTerm ?entryTerm .
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?terminologyContextNode core:termLabel ?termLabel .
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?terminologyContextNode core:termType ?termType .
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} WHERE {
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?subject ?property ?terminologyContextNode .
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?terminologyContextNode core:referencedTerm ?referencedTerm .
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?terminologyContextNode core:entryTerm ?entryTerm .
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?terminologyContextNode core:termLabel ?termLabel .
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?terminologyContextNode core:termType ?termType .
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}
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</query-construct>
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@ -189,7 +189,7 @@ var addTerminologyForm = {
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"<div class='row'>" +
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"<span class='column termLabel'>" +
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"<input type='checkbox' id='CUI' name='CUI' value='" + cuiURI + "' label='" + label + "' termType='" + type + "'/>" +
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label + "( " + type + ")</span>" +
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label + " (" + type + ")</span>" +
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"<span class='column termDefinition'>" + definition + "</span>" +
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"</div>" +
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"</li>";
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@ -58,6 +58,7 @@ SPARQL queries for existing values. --%>
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?terminologyContextNode core:referencedTerm ?referencedTerm .
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?terminologyContextNode core:entryTerm ?entryTerm .
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?terminologyContextNode core:termLabel ?termLabel .
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?terminologyContextNode core:termType ?termType .
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</v:jsonset>
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<c:set var="returnPathAfterSubmit" value="/edit/editRequestDispatch.jsp?subjectUri=${subjectUri}&predicateUri=${predicateUri}" />
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@ -82,7 +83,7 @@ SPARQL queries for existing values. --%>
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"urisInScope" : { },
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"literalsInScope": { },
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"urisOnForm" : [ "referencedTerm" ],
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"literalsOnForm" : [ "entryTerm", "termLabel" ],
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"literalsOnForm" : [ "entryTerm", "termLabel", "termType" ],
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"filesOnForm" : [ ],
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"sparqlForLiterals" : { },
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"sparqlForUris" : { },
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@ -107,7 +108,7 @@ SPARQL queries for existing values. --%>
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"literalOptions" : [ ],
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"predicateUri" : "",
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"objectClassUri" : "",
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"rangeDatatypeUri" : "",
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"rangeDatatypeUri" : "${stringDatatypeUriJson}",
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"rangeLang" : "",
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"assertions" : [ "${n3ForTerminology}" ]
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},
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@ -118,7 +119,18 @@ SPARQL queries for existing values. --%>
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"literalOptions" : [ ],
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"predicateUri" : "",
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"objectClassUri" : "",
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"rangeDatatypeUri" : "",
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"rangeDatatypeUri" : "${stringDatatypeUriJson}",
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"rangeLang" : "",
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"assertions" : [ "${n3ForTerminology}" ]
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}
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,"termType" : {
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"newResource" : "false",
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"validators" : [ "nonempty" ],
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"optionsType" : "UNDEFINED",
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"literalOptions" : [ ],
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"predicateUri" : "",
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"objectClassUri" : "",
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"rangeDatatypeUri" : "${stringDatatypeUriJson}",
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"rangeLang" : "",
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"assertions" : [ "${n3ForTerminology}" ]
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}
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@ -201,14 +213,16 @@ SPARQL queries for existing values. --%>
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<%
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String termLabelUri = vivoCore + "termLabel";
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String termTypeUri = vivoCore + "termType";
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for ( Individual termNode : terminologyAnnotationNodes ) {
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request.setAttribute("termNodeUri", termNode.getURI());
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//Get label and type only as mirroring authorship where labels but no links for individuals incoldued
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DataPropertyStatement termLabelStatement = termNode.getDataPropertyStatement(termLabelUri);
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String termLabel = termLabelStatement.getData();
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request.setAttribute("termLabel", termLabel);
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//Possible to get referenced term using object property statement?
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DataPropertyStatement termTypeStatement = termNode.getDataPropertyStatement(termTypeUri);
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String termType = termTypeStatement.getData();
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request.setAttribute("termType", termType);
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%>
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<li class="existingTerm">
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<%-- span.author will be used in the next phase, when we display a message that the author has been
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@ -218,7 +232,7 @@ SPARQL queries for existing values. --%>
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for the case when it's followed by an em tag - we want the width to apply to the whole thing. --%>
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<span class="termWrapper">
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<span class="termLabel">
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${termLabel}</span>
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${termLabel} (${termType})</span>
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</span>
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<c:url var="deleteTermHref" value="/edit/primitiveDelete" />
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<a href="${deleteTermHref}" class="remove">Remove</a>
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@ -14,5 +14,5 @@
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<#-- Use a macro to keep variable assignments local; otherwise the values carry over to the
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next statement -->
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<#macro showTerm statement>
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<a href="${statement.referencedTerm}">${statement.termLabel}</a>
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<a href="${statement.referencedTerm}">${statement.termLabel} (${statement.termType})</a>
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</#macro>
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@ -25,12 +25,19 @@ import freemarker.ext.beans.BeansWrapper;
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import freemarker.template.DefaultObjectWrapper;
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import edu.cornell.mannlib.vitro.webapp.edit.n3editing.configuration.Field;
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import javax.servlet.RequestDispatcher;
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import com.hp.hpl.jena.vocabulary.XSD;
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public class ProcessTerminologyController extends VitroHttpServlet {
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private static final long serialVersionUID = 1L;
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private static final Log log = LogFactory.getLog(ProcessTerminologyController.class);
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private static final String submissionUrl = "/edit/processRdfForm2.jsp";
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//Field names/variables names for n3 - these will have numbers added as suffix if more than one term
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private static String referencedBase = "referencedTerm";
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private static String entryBase = "entryTerm";
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private static String labelBase = "termLabel";
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private static String typeBase = "termType";
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//String datatype
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private static String xsdStringType = XSD.xstring.toString();
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@Override
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protected void doPost(HttpServletRequest req, HttpServletResponse resp) throws ServletException, IOException {
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super.doPost(req, resp);
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@ -101,19 +108,19 @@ public class ProcessTerminologyController extends VitroHttpServlet {
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String[] termsArray = termParam.split(",");
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String[] termLabels = labelParam.split(",");
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String[] termTypes = typeParam.split(",");
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String entryTerm = vreq.getParameter("entryTerm");
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int numberParameters = termsArray.length;
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int index;
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String referencedBase = "referencedTerm";
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String labelBase = "termLabel";
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String termBase = "termType";
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//Should already include entry term so no need to include here
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//If that changes, then add entry term here
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//String entryTerm = vreq.getParameter("entryTerm");
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//newUrl += "&entryTerm=" + URLEncoder.encode(entryTerm);
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//Add entry
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//Process values and generate url matching field name to value
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for(index = 1; index <= numberParameters; index++) {
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String referencedInputName = referencedBase + index;
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String termLabelInputName = labelBase + index;
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String termTypeInputName =termBase + index;
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String termTypeInputName =typeBase + index;
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//array is set to start at 0, not 1
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String referencedTerm = termsArray[index - 1];
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String termLabel = termLabels[index - 1];
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@ -141,7 +148,7 @@ public class ProcessTerminologyController extends VitroHttpServlet {
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}
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/*
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* "referencedTerm" : {
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* "referencedTerm" : {
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"newResource" : "false",
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"validators" : [ "nonempty" ],
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"optionsType" : "UNDEFINED", //UNSURE WHAT TO KEEP HERE
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@ -159,7 +166,7 @@ public class ProcessTerminologyController extends VitroHttpServlet {
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"literalOptions" : [ ],
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"predicateUri" : "",
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"objectClassUri" : "",
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"rangeDatatypeUri" : "",
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"rangeDatatypeUri" : "${stringDatatypeUriJson}",
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"rangeLang" : "",
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"assertions" : [ "${n3ForTerminology}" ]
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},
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@ -170,7 +177,18 @@ public class ProcessTerminologyController extends VitroHttpServlet {
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"literalOptions" : [ ],
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"predicateUri" : "",
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"objectClassUri" : "",
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"rangeDatatypeUri" : "",
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"rangeDatatypeUri" : "${stringDatatypeUriJson}",
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"rangeLang" : "",
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"assertions" : [ "${n3ForTerminology}" ]
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}
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,"termType" : {
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"newResource" : "false",
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"validators" : [ "nonempty" ],
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"optionsType" : "UNDEFINED",
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"literalOptions" : [ ],
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"predicateUri" : "",
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"objectClassUri" : "",
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"rangeDatatypeUri" : "${stringDatatypeUriJson}",
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"rangeLang" : "",
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"assertions" : [ "${n3ForTerminology}" ]
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}
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@ -179,23 +197,20 @@ public class ProcessTerminologyController extends VitroHttpServlet {
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private void addFields(EditConfiguration editConfig, VitroRequest vreq, int numberTerms) {
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Map<String, Field> fieldMap = new HashMap<String, Field>();
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int index;
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String referencedBase = "referencedTerm";
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String entryBase = "entryTerm";
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String labelBase = "termLabel";
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//Entry only needs to be added once
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fieldMap.put(entryBase, generateField(editConfig));
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fieldMap.put(entryBase, generateField(editConfig, xsdStringType));
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//First one already included so add new ones here
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for(index = 1; index <= numberTerms; index++) {
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int suffix = index;
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String referencedTerm = referencedBase + suffix;
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String label = labelBase + suffix;
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//need to add termType
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String type = typeBase + suffix;
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//Generate Field for each
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fieldMap.put(referencedTerm, generateField(editConfig));
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fieldMap.put(label, generateField(editConfig));
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//termType would also go in here
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fieldMap.put(referencedTerm, generateField(editConfig, null));
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fieldMap.put(label, generateField(editConfig, xsdStringType));
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fieldMap.put(type, generateField(editConfig, xsdStringType));
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}
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editConfig.setFields(fieldMap);
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}
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@ -210,7 +225,7 @@ public class ProcessTerminologyController extends VitroHttpServlet {
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"rangeDatatypeUri" : "",
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"rangeLang" : "",
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"assertions" : [ "${n3ForTerminology}" ]*/
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private Field generateField(EditConfiguration editConfig) {
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private Field generateField(EditConfiguration editConfig, String dataType) {
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List<String> n3Required = editConfig.getN3Required();
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Field field = new Field();
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field.setNewResource(false);
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@ -221,8 +236,13 @@ public class ProcessTerminologyController extends VitroHttpServlet {
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field.setLiteralOptions(new ArrayList<List<String>>());
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field.setPredicateUri("");
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field.setObjectClassUri("");
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field.setRangeDatatypeUri("");
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field.setRangeLang("");
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if(dataType == null || dataType.isEmpty()) {
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field.setRangeLang("");
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field.setRangeDatatypeUri("");
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} else {
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field.setRangeDatatypeUri(dataType);
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}
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field.setAssertions(n3Required);
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return field;
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}
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@ -238,9 +258,6 @@ public class ProcessTerminologyController extends VitroHttpServlet {
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List<String> literalsOnForm = new ArrayList<String>();
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int index;
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String referencedBase = "referencedTerm";
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String entryBase = "entryTerm";
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String labelBase = "termLabel";
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//entry term needs to be added only once
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literalsOnForm.add(entryBase);
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@ -249,8 +266,10 @@ public class ProcessTerminologyController extends VitroHttpServlet {
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int suffix = index;
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String referencedTerm = referencedBase + suffix;
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String label = labelBase + suffix;
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String type = typeBase + suffix;
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urisOnForm.add(referencedTerm);
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literalsOnForm.add(label);
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literalsOnForm.add(type);
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}
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editConfig.setUrisOnform(urisOnForm);
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editConfig.setLiteralsOnForm(literalsOnForm);
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@ -268,21 +287,23 @@ public class ProcessTerminologyController extends VitroHttpServlet {
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List<String> n3Required = new ArrayList<String>();
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int index;
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String nodeBase = "?terminologyContextNode";
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String referencedBase = "?referencedTerm";
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//there's only one entry term in this case
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String entryBase = "?entryTerm";
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String labelBase = "?termLabel";
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String entryVar = "?" + entryBase;
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String referencedVar = "?" + referencedBase;
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String labelVar = "?" + labelBase;
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String typeVar = "?" + typeBase;
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String prefixStr = "@prefix core: <http://vivoweb.org/ontology/core#> .";
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//First one already included so add new ones here
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for(index = 1; index <= numberTerms; index++) {
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int suffix = index;
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String node = nodeBase + suffix;
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String referencedTerm = referencedBase + suffix;
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String label = labelBase + suffix;
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String referencedTerm = referencedVar + suffix;
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String label = labelVar + suffix;
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String type = typeVar + suffix;
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String n3String = prefixStr;
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n3String += "?subject ?predicate " + node + " . " +
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node + " core:entryTerm " + entryBase + " . " +
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node + " core:entryTerm " + entryVar + " . " +
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node + " core:termLabel " + label + " . " +
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node + " core:termType " + type + " . " +
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node + " core:referencedTerm " + referencedTerm + " . ";
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n3Required.add(n3String);
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}
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