From 1fafc58def6f2c9320db8a4ee8e5d35916df9a57 Mon Sep 17 00:00:00 2001 From: brianjlowe Date: Wed, 24 Jul 2013 15:03:13 -0400 Subject: [PATCH] ISF owl files --- productMods/WEB-INF/filegraph/tbox/bfo11.owl | 554 +++ .../filegraph/tbox/dateTimeValuePrecision.owl | 91 + .../WEB-INF/filegraph/tbox/documentStatus.owl | 91 + .../geopolitical.tbox.ver1.1-11-18-11.owl | 2 + .../filegraph/tbox/isDefinedBy-1.5.owl | 25 - .../{scires-1.5.owl => scires-public-1.5.owl} | 43 +- .../WEB-INF/filegraph/tbox/vitroPublic.owl | 69 + .../WEB-INF/filegraph/tbox/vivo-bibo-1.5.owl | 1417 ------- .../filegraph/tbox/vivo-bibo-public-1.5.owl | 1585 ++++++++ ...vo-c4o-1.5.owl => vivo-c4o-public-1.5.owl} | 21 +- .../WEB-INF/filegraph/tbox/vivo-core-1.5.owl | 3492 ----------------- .../filegraph/tbox/vivo-core-public-1.5.owl | 2155 ++++++++++ .../filegraph/tbox/vivo-dcelements-1.5.owl | 24 - .../tbox/vivo-dcelements-public-1.5.owl | 41 + .../filegraph/tbox/vivo-dcterms-1.5.owl | 47 - .../tbox/vivo-dcterms-public-1.5.owl | 47 + .../WEB-INF/filegraph/tbox/vivo-event-1.5.owl | 112 - .../filegraph/tbox/vivo-event-public-1.5.owl | 165 + ...abio-1.5.owl => vivo-fabio-public-1.5.owl} | 12 +- .../WEB-INF/filegraph/tbox/vivo-foaf-1.5.owl | 208 - .../filegraph/tbox/vivo-foaf-public-1.5.owl | 196 + .../WEB-INF/filegraph/tbox/vivo-pws-1.5.owl | 39 - .../filegraph/tbox/vivo-pws-public-1.5.owl | 41 + ...-skos-1.5.owl => vivo-skos-public-1.5.owl} | 13 +- productMods/WEB-INF/filegraph/tbox/vivo.owl | 810 ++++ 25 files changed, 5918 insertions(+), 5382 deletions(-) create mode 100644 productMods/WEB-INF/filegraph/tbox/bfo11.owl create mode 100644 productMods/WEB-INF/filegraph/tbox/dateTimeValuePrecision.owl create mode 100644 productMods/WEB-INF/filegraph/tbox/documentStatus.owl delete mode 100644 productMods/WEB-INF/filegraph/tbox/isDefinedBy-1.5.owl rename productMods/WEB-INF/filegraph/tbox/{scires-1.5.owl => scires-public-1.5.owl} (90%) create mode 100644 productMods/WEB-INF/filegraph/tbox/vitroPublic.owl delete mode 100644 productMods/WEB-INF/filegraph/tbox/vivo-bibo-1.5.owl create mode 100644 productMods/WEB-INF/filegraph/tbox/vivo-bibo-public-1.5.owl rename productMods/WEB-INF/filegraph/tbox/{vivo-c4o-1.5.owl => vivo-c4o-public-1.5.owl} (72%) delete mode 100644 productMods/WEB-INF/filegraph/tbox/vivo-core-1.5.owl create mode 100644 productMods/WEB-INF/filegraph/tbox/vivo-core-public-1.5.owl delete mode 100644 productMods/WEB-INF/filegraph/tbox/vivo-dcelements-1.5.owl create mode 100644 productMods/WEB-INF/filegraph/tbox/vivo-dcelements-public-1.5.owl delete mode 100644 productMods/WEB-INF/filegraph/tbox/vivo-dcterms-1.5.owl create mode 100644 productMods/WEB-INF/filegraph/tbox/vivo-dcterms-public-1.5.owl delete mode 100644 productMods/WEB-INF/filegraph/tbox/vivo-event-1.5.owl create mode 100644 productMods/WEB-INF/filegraph/tbox/vivo-event-public-1.5.owl rename productMods/WEB-INF/filegraph/tbox/{vivo-fabio-1.5.owl => vivo-fabio-public-1.5.owl} (86%) delete mode 100644 productMods/WEB-INF/filegraph/tbox/vivo-foaf-1.5.owl create mode 100644 productMods/WEB-INF/filegraph/tbox/vivo-foaf-public-1.5.owl delete mode 100644 productMods/WEB-INF/filegraph/tbox/vivo-pws-1.5.owl create mode 100644 productMods/WEB-INF/filegraph/tbox/vivo-pws-public-1.5.owl rename productMods/WEB-INF/filegraph/tbox/{vivo-skos-1.5.owl => vivo-skos-public-1.5.owl} (83%) create mode 100644 productMods/WEB-INF/filegraph/tbox/vivo.owl diff --git a/productMods/WEB-INF/filegraph/tbox/bfo11.owl b/productMods/WEB-INF/filegraph/tbox/bfo11.owl new file mode 100644 index 00000000..7246bf0c --- /dev/null +++ b/productMods/WEB-INF/filegraph/tbox/bfo11.owl @@ -0,0 +1,554 @@ + + + + + + + + + + + + + + +]> + + + + Basic Formal Ontology (BFO) + Holger Stenzhorn + Andrew Spear + Pierre Grenon + Alan Ruttenberg + Institute for Formal Ontology and Medical Information Science (IFOMIS) + http://creativecommons.org/licenses/by/3.0 + &base; + application/rdf+xml + en + Barry Smith: "Against Fantology" + Barry Smith: "Beyond Concepts: Ontology as Reality Representation" + Pierre Grenon and Barry Smith: "SNAP and SPAN: Towards Geospatial Dynamics" + Pierre Grenon, Barry Smith and Louis Goldberg: "Biodynamic Ontology: Applying BFO in the Biomedical Domain" + Barry Smith and Pierre Grenon: "The Cornucopia of Formal Ontological Relations" + Barry Smith: "Basic Tools of Formal Ontology" + Pierre Grenon: "Spatio-temporality in Basic Formal Ontology: SNAP and SPAN, Upper-Level Ontology, and Framework for Formalization" + Pierre Grenon: "BFO in a Nutshell: A Bi-categorial Axiomatization of BFO and Comparison with DOLCE" + Pierre Grenon: "Nuts in BFO's Nutshell: Revisions to the Bi-categorial Axiomatization of BFO" + 1.1 + + + + + + + + + + + + + entity + + + + + + + + + + + + + + + + + + + + + + + + + + + continuant + Definition: An entity [bfo:Entity] that exists in full at any time in which it exists at all, persists through time while maintaining its identity and has no temporal parts. + Examples: a heart, a person, the color of a tomato, the mass of a cloud, a symphony orchestra, the disposition of blood to coagulate, the lawn and atmosphere in front of our building + Synonyms: endurant + + + + + + + + + + + + + + + dependent_continuant + Definition: A continuant [snap:Continuant] that is either dependent on one or other independent continuant [snap:IndependentContinuant] bearers or inheres in or is borne by other entities. + + + + + + + disposition + Definition: A realizable entity [snap:RealizableEntity] that essentially causes a specific process or transformation in the object [snap:Object] in which it inheres, under specific circumstances and in conjunction with the laws of nature. A general formula for dispositions is: X (object [snap:Object] has the disposition D to (transform, initiate a process) R under conditions C. + Examples: the disposition of vegetables to decay when not refrigerated, the disposition of a vase to brake if dropped, the disposition of blood to coagulate, the disposition of a patient with a weakened immune system to contract disease, the disposition of metal to conduct electricity. + + + + + + + fiat_object_part + Definition: A material entity [snap:MaterialEntity] that is part of an object [snap:Object] but is not demarcated by any physical discontinuities. + Examples: upper and lower lobes of the left lung, the dorsal and ventral surfaces of the body, the east side of Saarbruecken, the lower right portion of a human torso + Synonyms: fiat substance part + + + + + + + function + Definition: A realizable entity [snap:RealizableEntity] the manifestation of which is an essentially end-directed activity of a continuant [snap:Continuant] entity in virtue of that continuant [snap:Continuant] entity being a specific kind of entity in the kind or kinds of contexts that it is made for. + Examples: the function of a birth canal to enable transport, the function of the heart in the body: to pump blood, to receive de-oxygenated and oxygenated blood, etc., the function of reproduction in the transmission of genetic material, the digestive function of the stomach to nutriate the body, the function of a hammer to drive in nails, the function of a computer program to compute mathematical equations, the function of an automobile to provide transportation, the function of a judge in a court of law + + + + + + generically_dependent_continuant + Definition: A continuant [snap:Continuant] that is dependent on one or other independent continuant [snap:IndependentContinuant] bearers. For every instance of A requires some instance of (an independent continuant [snap:IndependentContinuant] type) B but which instance of B serves can change from time to time. + Examples: a certain PDF file that exists in different and in several hard drives + + + + + + + + + + + + + + + + independent_continuant + Definition: A continuant [snap:Continuant] that is a bearer of quality [snap:Quality] and realizable entity [snap:RealizableEntity] entities, in which other entities inhere and which itself cannot inhere in anything. + Examples: an organism, a heart, a leg, a person, a symphony orchestra, a chair, the bottom right portion of a human torso, the lawn and atmosphere in front of our building + Synonyms: substantial entity + + + + + + + + + + + + + + + + material_entity + Definition: An independent continuant [snap:IndependentContinuant] that is spatially extended whose identity is independent of that of other entities and can be maintained through time. Note: Material entity [snap:MaterialEntity] subsumes object [snap:Object], fiat object part [snap:FiatObjectPart], and object aggregate [snap:ObjectAggregate], which assume a three level theory of granularity, which is inadequate for some domains, such as biology. + Examples: collection of random bacteria, a chair, dorsal surface of the body + + + + + + + object + Definition: A material entity [snap:MaterialEntity] that is spatially extended, maximally self-connected and self-contained (the parts of a substance are not separated from each other by spatial gaps) and possesses an internal unity. The identity of substantial object [snap:Object] entities is independent of that of other entities and can be maintained through time. + Examples: an organism, a heart, a chair, a lung, an apple + Synonyms: substance + + + + + + + object_aggregate + Definition: A material entity [snap:MaterialEntity] that is a mereological sum of separate object [snap:Object] entities and possesses non-connected boundaries. + Examples: a heap of stones, a group of commuters on the subway, a collection of random bacteria, a flock of geese, the patients in a hospital + Synonyms: substance aggregate + + + + + + + + + object_boundary + Definition: An independent continuant [snap:IndependentContinuant] that is a lower dimensional part of a spatial entity, normally a closed two-dimensional surface. Boundaries are those privileged parts of object [snap:Object] entities that exist at exactly the point where the object [snap:Object] is separated off from the rest of the existing entities in the world. + Examples: the surface of the skin, the surface of the earth, the surface of the interior of the stomach, the outer surface of a cell or cell wall + Synonyms: substance boundary + Comment: Boundaries are theoretically difficult entities to account for, however the intuitive notion of a physical boundary as a surface of some sort (whether inside or outside of a thing) will generally serve as a good guide for the use of this universal. + + + + + + + + one_dimensional_region + Definition: A spatial region [snap:SpatialRegion] with one dimension. + Examples: the part of space that is a line stretching from one end of absolute space to the other, an edge of a cube-shaped part of space + + + + + + quality + Definition: A specifically dependent continuant [snap:SpecificallyDependentContinuant] that is exhibited if it inheres in an entity or entities at all (a categorical property). + Examples: the color of a tomato, the ambient temperature of air, the circumference of a waist, the shape of a nose, the mass of a piece of gold, the weight of a chimpanzee + + + + + + realizable_entity + Definition: A specifically dependent continuant [snap:SpecificallyDependentContinuant] that inheres in continuant [snap:Continuant] entities and are not exhibited in full at every time in which it inheres in an entity or group of entities. The exhibition or actualization of a realizable entity is a particular manifestation, functioning or process that occurs under certain circumstances. + Examples: the role of being a doctor, the function of the reproductive organs, the disposition of blood to coagulate, the disposition of metal to conduct electricity + Comment: If a realizable entity [snap:RealizableEntity] inheres in a continuant [snap:Continuant], this does not imply that it is actually realized. + + + + + + + role + Definition: A realizable entity [snap:RealizableEntity] the manifestation of which brings about some result or end that is not essential to a continuant [snap:Continuant] in virtue of the kind of thing that it is but that can be served or participated in by that kind of continuant [snap:Continuant] in some kinds of natural, social or institutional contexts. + Examples: the role of a person as a surgeon, the role of a chemical compound in an experiment, the role of a patient relative as defined by a hospital administrative form, the role of a woman as a legal mother in the context of system of laws, the role of a biological grandfather as legal guardian in the context of a system of laws, the role of ingested matter in digestion, the role of a student in a university + + + + + + + + + site + Definition: An independent continuant [snap:IndependentContinuant] consisting of a characteristic spatial shape in relation to some arrangement of other continuant [snap:Continuant] entities and of the medium which is enclosed in whole or in part by this characteristic spatial shape. Site [snap:Site] entities are entities that can be occupied by other continuant [snap:Continuant] entities. + Examples: a particular room in a particular hospital, Maria's nostril or her intestines for a variety of bacteria. + Comment: An instance of Site [snap:Site] is a mixture of independent continuant [snap:IndependentContinuant] entities which act as surrounding environments for other independent continuant [snap:IndependentContinuant] entities, most importantly for instances of object [snap:Object]. A site [snap:Site] is typically made of object [snap:Object] or fiat object part [snap:FiatObjectPart] entities and a surrounding medium in which is found an object [snap:Object] occupying the site [snap:Site]. Independent continuant [snap:IndependentContinuant] entities may be associated with others (which, then, are sites) through a relation of "occupation". That relation is connected to, but distinct from, the relation of spatial location. Site [snap:Site] entities are not to be confused with spatial region [snap:SpatialRegion] entities. In BFO, site [snap:Site] allows for a so-called relational view of space which is different from the view corresponding to the class spatial region [snap:SpatialRegion] (see the comment on this class). + + + + + + + + + + + + + + + + + spatial_region + Definition: A continuant [snap:Continuant] that is neither bearer of quality [snap:Quality] entities nor inheres in any other entities. + Examples: the sum total of all space in the universe, parts of the sum total of all space in the universe + Comment: An instance of spatial region [snap:SpatialRegion] is a part of space. All parts of space are spatial region [snap:SpatialRegion] entities and only spatial region [snap:SpatialRegion] entities are parts of space. Space is the entire extent of the spatial universe, a designated individual, which is thus itself a spatial region [snap:SpatialRegion]. + Comment: All instances of continuant [snap:Continuant] are spatial entities, that is, they enter in the relation of (spatial) location with spatial region [snap:SpatialRegion] entities. As a particular case, the exact spatial location of a spatial region [snap:SpatialRegion] is this region itself. + Comment: Space and spatial region [snap:SpatialRegion] entities are entities in their own rights which exist independently of any entities which can be located at them. This view of space is sometimes called "absolutist" or "the container view". In BFO, the class site [snap:Site] allows for a so-called relational view of space, that is to say, a view according to which spatiality is a matter of relative location between entities and not a matter of being tied to space. The bridge between these two views is secured through the fact that while instances of site [snap:Site] are not spatial region [snap:SpatialRegion] entities, they are nevertheless spatial entities. + + + + + + + + + + + + + + specifically_dependent_continuant + Definition: A continuant [snap:Continuant] that inheres in or is borne by other entities. Every instance of A requires some specific instance of B which must always be the same. + Examples: the mass of a cloud, the smell of mozzarella, the liquidity of blood, the color of a tomato, the disposition of fish to decay, the role of being a doctor, the function of the heart in the body: to pump blood, to receive de-oxygenated and oxygenated blood, etc. + Synonyms: property, trope, mode + + + + + + + + three_dimensional_region + Definition: A spatial region [snap:SpatialRegion] with three dimensions. + Examples: a cube-shaped part of space, a sphere-shaped part of space + + + + + + + + two_dimensional_region + Definition: A spatial region [snap:SpatialRegion] with two dimensions. + Examples: the surface of a cube-shaped part of space, the surface of a sphere-shaped part of space, the surface of a rectilinear planar figure-shaped part of space + + + + + + + + zero_dimensional_region + Definition: A spatial region [snap:SpatialRegion] with no dimensions. + Examples: a point + + + + + + + + + + + + + + + + + + + + + + connected_spatiotemporal_region + Definition: A space time region [span:SpaceTimeRegion] that has temporal and spatial dimensions such that all points within the spatiotemporal region are mediately or immediately connected to all other points within the same space time region [span:SpaceTimeRegion]. + Examples: the spatial and temporal location of an individual organism's life, the spatial and temporal location of the development of a fetus + + + + + + + + + + + + + + connected_temporal_region + Definition: A temporal region [span:TemporalRegion] every point of which is mediately or immediately connected with every other point of which. + Examples: the 1970s years, the time from the beginning to the end of a heart attack, the time taken up by cellular meiosis + + + + + + + + + fiat_process_part + Definition: A processual entity [span:ProcessualEntity] that is part of a process but that does not have bona fide beginnings and endings corresponding to real discontinuities. + Examples: chewing during a meal, the middle part of a rainstorm, the worst part of a heart-attack, the most interesting part of Van Gogh's life + + + + + + + + + + + + + + + occurrent + Definition: An entity [bfo:Entity] that has temporal parts and that happens, unfolds or develops through time. Sometimes also called perdurants. + Examples: the life of an organism, a surgical operation as processual context for a nosocomical infection, the spatiotemporal context occupied by a process of cellular meiosis, the most interesting part of Van Gogh's life, the spatiotemporal region occupied by the development of a cancer tumor + Synonyms: perdurant + + + + + + + + + process + Definition: A processual entity [span:ProcessualEntity] that is a maximally connected spatiotemporal whole and has bona fide beginnings and endings corresponding to real discontinuities. + Examples: the life of an organism, the process of sleeping, the process of cell-division + + + + + + + + + process_aggregate + Definition: A processual entity [span:ProcessualEntity] that is a mereological sum of process [span:Process] entities and possesses non-connected boundaries. + Examples: the beating of the hearts of each of seven individuals in the room, the playing of each of the members of an orchestra, a process of digestion and a process of thinking taken together + + + + + + + + + process_boundary + Definition: A processual entity [span:ProcessualEntity] that is the fiat or bona fide instantaneous temporal process boundary. + Examples: birth, death, the forming of a synapse, the onset of REM sleep, the detaching of a finger in an industrial accident, the final separation of two cells at the end of cell-division, the incision at the beginning of a surgery + + + + + + + + + processual_context + Definition: An occurrent [span:Occurrent] consisting of a characteristic spatial shape inhering in some arrangement of other occurrent [span:Occurrent] entities. processual context [span:ProcessualContext] entities are characteristically entities at or in which other occurrent [span:Occurrent] entities can be located or occur. + Examples: The processual context for a given manipulation occurring as part of an experiment is made of processual entities which occur in parallel, are not necessarily all parts of the experiment themselves and may involve continuant [snap:Continuant] entities which are in the spatial vicinity of the participants in the experiment. + Comment: An instance of a processual context [span:ProcessualContext] is a mixture of processual entity [span:ProcessualEntity] which stand as surrounding environments for other processual entity [span:ProcessualEntity] entities. The class processual context [span:ProcessualContext] is the analogous among occurrent [span:Occurrent] entities to the class site [snap:Site] among continuant [snap:Continuant] entities. + + + + + + + + + + + + + + + + + + processual_entity + Definition: An occurrent [span:Occurrent] that exists in time by occurring or happening, has temporal parts and always involves and depends on some entity. + Examples: the life of an organism, the process of meiosis, the course of a disease, the flight of a bird + + + + + + scattered_spatiotemporal_region + Definition: A space time region [span:SpaceTimeRegion] that has spatial and temporal dimensions and every spatial and temporal point of which is not connected with every other spatial and temporal point of which. + Examples: the space and time occupied by the individual games of the World Cup, the space and time occupied by the individual liaisons in a romantic affair + + + + + + scattered_temporal_region + Definition: A temporal region [span:TemporalRegion] every point of which is not mediately or immediately connected with every other point of which. + Examples: the time occupied by the individual games of the World Cup, the time occupied by the individual liaisons in a romantic affair + + + + + + spatiotemporal_instant + Definition: A connected space time region [span:ConnectedSpaceTimeRegion] at a specific moment. + Examples: the space time region occupied by a single instantaneous temporal slice (part) of a process + + + + + + spatiotemporal_interval + Definition: A connected space time region [span:ConnectedSpaceTimeRegion] that endures for more than a single moment of time. + Examples: the space time region occupied by a process or by a fiat processual part + + + + + + + + + + + + + + + spatiotemporal_region + Definition: An occurrent [span:Occurrent] at or in which processual entity [span:ProcessualEntity] entities can be located. + Examples: the spatiotemporal region occupied by a human life, the spatiotemporal region occupied by the development of a cancer tumor, the spatiotemporal context occupied by a process of cellular meiosis + Comment: An instance of the spatiotemporal region [span:SpatiotemporalRegion] is a part of spacetime. All parts of spacetime are spatiotemporal region [span:SpatiotemporalRegion] entities and only spatiotemporal region [span:SpatiotemporalRegion] entities are parts of spacetime. In particular, neither spatial region [snap:SpatialRegion] entities nor temporal region [span:TemporalRegion] entities are in BFO parts of spacetime. Spacetime is the entire extent of the spatiotemporal universe, a designated individual, which is thus itself a spatiotemporal region [span:SpatiotemporalRegion]. Spacetime is among occurrents the analogous of space among continuant [snap:Continuant] entities. + Comment: All instances of occurrent [span:Occurrent] are spatiotemporal entities, that is, they enter in the relation of (spatiotemporal) location with spatiotemporal region [span:SpatiotemporalRegion] entities. As a particular case, the exact spatiotemporal location of a spatiotemporal region [span:SpatiotemporalRegion] is this region itself. + Comment: Spacetime and spatiotemporal region [span:SpatiotemporalRegion] entities are entities in their own rights which exist independently of any entities which can be located at them. This view of spacetime can be called "absolutist" or "the container view". In BFO, the class processual context [span:ProcessualContext] allows for a so-called relational view of spacetime, that is to say, a view according to which spatiotemporality is a matter of relative location between entities and not a matter of being tied to spacetime. In BFO, the bridge between these two views is secured through the fact that instances of processual context [span:ProcessualContext] are too spatiotemporal entities. + + + + + + temporal_instant + Definition: A connected temporal region [span:ConnectedTemporalRegion] comprising a single moment of time. + Examples: right now, the moment at which a finger is detached in an industrial accident, the moment at which a child is born, the moment of death + + + + + + temporal_interval + Definition: A connected temporal region [span:ConnectedTemporalRegion] lasting for more than a single moment of time. + Examples: any continuous temporal duration during which a process occurs + + + + + + + + + + + + + + + temporal_region + Definition: An occurrent [span:Occurrent] that is part of time. + Examples: the time it takes to run a marathon, the duration of a surgical procedure, the moment of death + Comment: An instance of temporal region [span:TemporalRegion] is a part of time. All parts of time are temporal region [span:TemporalRegion] entities and only temporal region [span:TemporalRegion] entities are parts of time. Time is the entire extent of the temporal universe, a designated individual, which is thus a temporal region itself. + Comment: All instances of occurrent [span:Occurrent] are temporal entities, that is, they enter in the relation of (temporal) location with temporal region [span:TemporalRegion] entities. As a particular case, the exact spatiotemporal location of a temporal region [span:TemporalRegion] is this region itself. Continuant [snap:Continuant] entities are not temporal entities in the technical sense just explained; they are related to time in a different way, not through temporal location but through a relation of existence at a time or during a period of time (see continuant [snap:Continuant]. + Comment: Time and temporal region [span:TemporalRegion] entities are entities in their own rights which exist independently of any entities which can be located at them. This view of time can be called "absolutist" or "the container view" in analogy to what is traditionally the case with space (see spatial region [snap:SpatialRegion]. + + diff --git a/productMods/WEB-INF/filegraph/tbox/dateTimeValuePrecision.owl b/productMods/WEB-INF/filegraph/tbox/dateTimeValuePrecision.owl new file mode 100644 index 00000000..76ab465a --- /dev/null +++ b/productMods/WEB-INF/filegraph/tbox/dateTimeValuePrecision.owl @@ -0,0 +1,91 @@ + + + + Datetime value precision + + + + + + + + + + + + + + + + + + + + + + + YearMonthDayValue + + + + + + + + YearMonthDayTimeValue + + + + + + + + YearMonthValue + + + + + + + + YearValue + + + + + + + diff --git a/productMods/WEB-INF/filegraph/tbox/documentStatus.owl b/productMods/WEB-INF/filegraph/tbox/documentStatus.owl new file mode 100644 index 00000000..8a9b1702 --- /dev/null +++ b/productMods/WEB-INF/filegraph/tbox/documentStatus.owl @@ -0,0 +1,91 @@ + + + + Document status + + + + + + + + + + + + + + + + + + + unpublished + + + rejected + + + draft + + + peer reviewed +  Peer review is the process by which articles are chosen to be included in a refereed journal. An editorial board consisting of experts in the same field as the author review the article and decide if it is authoritative enough for publication. + + + in press + Document to be published + + + accepted + Accepted for publication after peer reviewing + + + submitted + + + invited + + + published + Published document + + + + + + + diff --git a/productMods/WEB-INF/filegraph/tbox/geopolitical.tbox.ver1.1-11-18-11.owl b/productMods/WEB-INF/filegraph/tbox/geopolitical.tbox.ver1.1-11-18-11.owl index 37834ae3..d9ca2dbd 100644 --- a/productMods/WEB-INF/filegraph/tbox/geopolitical.tbox.ver1.1-11-18-11.owl +++ b/productMods/WEB-INF/filegraph/tbox/geopolitical.tbox.ver1.1-11-18-11.owl @@ -1,4 +1,6 @@ - - - - diff --git a/productMods/WEB-INF/filegraph/tbox/scires-1.5.owl b/productMods/WEB-INF/filegraph/tbox/scires-public-1.5.owl similarity index 90% rename from productMods/WEB-INF/filegraph/tbox/scires-1.5.owl rename to productMods/WEB-INF/filegraph/tbox/scires-public-1.5.owl index 1d58e2f2..d961b3b1 100644 --- a/productMods/WEB-INF/filegraph/tbox/scires-1.5.owl +++ b/productMods/WEB-INF/filegraph/tbox/scires-public-1.5.owl @@ -1,4 +1,6 @@ - - - ero + + Scientific Research A service that produces a physical object or data, such as a custom micro-array chip, a made to order antibody, or a behavioral dataset + Production Service A service that produces a physical object or data. @@ -40,10 +41,12 @@ eagle-i: Material entity that is used in a chemical reaction or other experimental process to detect, measure, examine, or produce other substances. NOTE: For now we are not addressing whether this is a subclass of foaf:Agent + Reagent Material entity that is used in a chemical reaction or other experimental process to detect, measure, examine, or produce other substances. + Phase 1 Clinical Trial In Phase I trials, researchers test an experimental drug or treatment in a small group of people (20-80) for the first time to evaluate its safety, determine a safe dosage range, and identify side effects OBI: An organism is material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs. NOTE that we are not addressing for now the issue of whether a foaf:Person is a subclass of obi:Organism + Organism An organism is a material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. + A clinical trial is a research study using human volunteers to answer questions about treatments for diseases and conditions. Clinical trials are conducted in phases. The trials at each phase have a different purpose and help scientists answer different questions. - A clinical trial is a research study using human volunteers to answer questions about treatments for diseases and conditions. Clinical trials are conducted in phases. The trials at each phase have a different purpose and help scientists answer different questions. + Clinical Trial A research study using human volunteers to answer specifc health-related questions. + Biological Specimen eagle-i: Material entity that is a portion or quantity of a biological material for use in testing, examination, or study. A biological specimen can be an individual animal, part of or derived an animal, plant, part of a plant, or microorganism. When a taxon is described, it is typically based on a single specimen and is referred to as the holotype. In Phase 3 trials, an experimental study drug or treatment is given to large groups of people (1,000-3,000) to confirm its effectiveness, monitor side effects, compare it to commonly used treatments, and collect information that will allow the experimental drug or treatment to be used safely. + Phase 3 Clinical Trial Phase 3 Clinical Trial @@ -93,6 +100,7 @@ NOTE that we are not addressing for now the issue of whether a foaf:Person is a + Instrument An implement used to facilitate work, especially precision work. A protocol is a plan specification which has sufficient level of detail and quantitative information to communicate it between domain experts, so that different domain experts will reliably be able to independently reproduce the process. + Protocol A plan specification that allows different domain experts to reliably and independently reproduce a process. + Phase 0 Clinical Trial Phase 0 is a recent designation for exploratory, first-in-human trials conducted in accordance with the United States Food and Drug Administration's (FDA) 2006 Guidance on Exploratory Investigational New Drug (IND) Studies. Phase 0 trials are also known as human microdosing studies and are designed to speed up the development of promising drugs or imaging agents by establishing very early on whether the drug or agent behaves in human subjects as was expected from preclinical studies. @@ -118,6 +128,7 @@ NOTE that we are not addressing for now the issue of whether a foaf:Person is a >Phase 4 Clinical Trial In Phase 4 trials, post marketing studies delineate additional information including the drug's or treatment's risks, benefits, and optimal use. + Phase 4 Clinical Trial @@ -126,8 +137,10 @@ NOTE that we are not addressing for now the issue of whether a foaf:Person is a >A service in which a service consumer receives the right to use a resource (instrument, database, software, etc) that is owned or managed by a service provider. Ownership of the accessed resource remains with the service provider during and after provision of service. A service in which a service consumer receives the right to use a resource (instrument, database, software, etc) that is owned or managed by a service provider. Ownership of the accessed resource remains with the service provider during and after provisi + Access Service + Research Project The comment in ero says "Maybe sameAs Investigation but is subject of funding" @@ -135,6 +148,7 @@ NOTE that we are not addressing for now the issue of whether a foaf:Person is a >A project whose goal is the increase of knowledge, the primary aim being a greater knowledge or understanding of the subject under study. + Human Study eagle-i: Research project that uses or collects measurements or assessments about humans. Phase 2 Clinical Trial + Phase 2 Clinical Trial In Phase 2 trials, an experimental study drug or treatment is given to a larger group of people (100-300) to see if it is effective and to further evaluate its safety. + Storage Service A service in which a service consumer provides some material or data as input which a service provider stores and returns as output. + provides access to + - + has documentation @@ -173,29 +191,35 @@ NOTE that we are not addressing for now the issue of whether a foaf:Person is a + realizes protocol - + + documentation for + access provided by + protocol realized by Every clinical trial in the United States must be approved and monitored by an Institutional Review Board (IRB). An IRB is an independent committee of physicians, statisticians, community advocates and others whose objective is to ensure that a clinical trial is ethical and the rights of study participants are protected. + Institutional Review Board (IRB) number - number of human participants in the study (trial). + + study population count @@ -204,5 +228,6 @@ NOTE that we are not addressing for now the issue of whether a foaf:Person is a NCT00000419 + National Clinical Trials (NCT) number diff --git a/productMods/WEB-INF/filegraph/tbox/vitroPublic.owl b/productMods/WEB-INF/filegraph/tbox/vitroPublic.owl new file mode 100644 index 00000000..d1f51520 --- /dev/null +++ b/productMods/WEB-INF/filegraph/tbox/vitroPublic.owl @@ -0,0 +1,69 @@ + + + +]> + + + + + + + Vitro public constructs + 0.1 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + \ No newline at end of file diff --git a/productMods/WEB-INF/filegraph/tbox/vivo-bibo-1.5.owl b/productMods/WEB-INF/filegraph/tbox/vivo-bibo-1.5.owl deleted file mode 100644 index 33ccab46..00000000 --- a/productMods/WEB-INF/filegraph/tbox/vivo-bibo-1.5.owl +++ /dev/null @@ -1,1417 +0,0 @@ - - - Audiovisual recording in film format - - - - stable - http://purl.org/ontology/bibo/ - aka movie. - - - A main division of a book - A chapter of a book. - - - - unstable - http://purl.org/ontology/bibo/ - - - A passage selected from a larger work. - - - - A passage selected from a larger work - stable - http://purl.org/ontology/bibo/ - Short Definition from the bibo ontology - - - stable - http://purl.org/ontology/bibo/ - A group of related documents issued at regular intervals. - - - - - - - - - - - - - - - - - - - - - - - - - - - - A work consisting of texts of rules and regulations related to statutes issued by executive or administrative agencies - stable - http://purl.org/ontology/bibo/ - - A collection of statutes. - Short Definition from OCLC Input Standards, EntW - Code of Federal Regulations - - - Notes or annotations about a resource - - - - Notes or annotations about a resource. - Short Definition from bibo ontology - stable - http://purl.org/ontology/bibo/ - - - stable - - - - A document describing an account or statement describing in detail an event, situation, or the like, usually as the result of observation, inquiry, etc. - http://purl.org/ontology/bibo/ - A document describing an account or statement describing in detail an event, situation, or the like, usually as the result of observation, inquiry, etc.. - - - - - - - - - Medical Subject Heading (MeSH) definition of Technical Report: Work consisting of a formal report giving details of the investigation and results of a medical or other scientific problem. When issued by a government agency or comparable official body, its contents may be classified, unclassified, or declassified with regard to security clearance. This publication type may also cover a scientific paper or article that records the current state or current position of scientific research and development. If so labeled by the editor or publisher, this publication type may be properly used for journal articles. - - - http://purl.org/ontology/bibo/ - A compilation of documents published from an event, such as a conference. - unstable - Short Definition copied from bibo ontology - A compilation of documents published from an event, such as a conference - - - - - - A document describing a standard - stable - A specification giving a precise statement of a process or a service requirement, often sanctioned by a nation or industry - http://purl.org/ontology/bibo/ - - - - Short Definition from OCLC Input Standards, EntW - - - http://purl.org/ontology/bibo/ - a document that states some contractual relationship or grants some right - - - - A legal document; for example, a court decision, a brief, and so forth. - stable - - - - - - - - - - - Short Definition from the bibo ontology - A distinct part of a larger document or collected document - - - - http://purl.org/ontology/bibo/ - a distinct part of a larger document or collected document. - unstable - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Short Definition copied from bibo ontology - - - - - - - - - - - - - - - - - - http://purl.org/ontology/bibo/ - - - - - - - - - A written or printed work of fiction or nonfiction, usually on sheets of paper fastened or bound together within covers. - A written or printed work of fiction or nonfiction, usually on sheets of paper fastened or bound together within covers - stable - - - - - - - - - - - A collection of Documents or Collections - Hill Ornithology Collection; Wiley Interscience Online Books Biochemisty Collection - Collection of information resources that have a unified identity. Archives, museums and libraries often acquire collections on specific subjects and from distinguished authors or researchers. Also includes collections of resources bundled into a license. - http://purl.org/ontology/bibo/ - Collection of information resources that have a unified identity - - stable - - - http://purl.org/ontology/bibo/ - stable - The status of the publication of a document. - The status of a document with respect to its publication. The statuses are represented as individuals of this class. Use the "show all individuals of this class" button on the class control panel to see the currently defined statuses. - submitted; accepted; in-press; published; invited; refereed. - The status of a document with respect to its publication. - - - Something carried out, acted or rendered. - unstable - - A public performance. - http://purl.org/ontology/bibo/ - - - A legal document proposing or enacting a law or a group of laws. - http://purl.org/ontology/bibo/ - - Enactments of legislative bodies, published in either statute or code form - unstable - From OCLC Input Standards, EntW - - - A written or printed communication addressed to a person or organization and usually transmitted by mail - A written or printed communication addressed to a person or organization and usually transmitted by mail - - - - - - A web page is an online document available (at least initially) on the world wide web. A web page is written first and foremost to appear on the web, as distinct from other online resources such as books, manuscripts or audio documents which use the web primarily as a distribution mechanism alongside other more traditional methods such as print. - unstable - One section of a website that appears at a unique address within the parent site's address or URL on the World Wide Web - http://purl.org/ontology/bibo/ - - - - - - stable - http://purl.org/ontology/bibo/ - Recorded audio in any format - An audio document; aka record. - - - - - - - - - phonograph record; tape; CD; DVD; DAT - - - - - - Short Definition from the bibo ontology - - - - - - - - - unstable - A section of a book - - - - - - - - - - http://purl.org/ontology/bibo/ - - - - - - - - - A section of a book. - - - http://purl.org/ontology/bibo/ - unstable - The written determination of a case, motion or claim by a court or tribunal - A document containing an authoritative determination (as a decree or judgment) made after consideration of facts or law. - - - - - - - A group of webpages available within a specific parent address or URL on the World Wide Web - unstable - A group of Webpages accessible on the Web. - Facebook; VIVOweb.org; Flickr - - - - - - - http://purl.org/ontology/bibo/ - - - An instance or a session in which testimony and arguments are presented, esp. before an official, as a judge in a lawsuit. - http://purl.org/ontology/bibo/ - Definiton from Bibo here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html - An instance or a session in which testimony and arguments are presented, esp. before an official, as a judge in a lawsuit. - - stable - - - unstable - A document stating the facts and points of law of a client's case - - - - http://purl.org/ontology/bibo/ - A written argument submitted to a court. - - - http://purl.org/ontology/bibo/ - A document that simultaneously contains other documents. - Short Definition is the Medical Subject Heading (MeSH) definition - - - - - - - stable - Work consisting of collections of previously published works - - - - - - stable - - - - An audio-visual document; film, video, and so forth. - - - - - - - - - Audiovisual recording in any format - film; video; Blu-ray - http://purl.org/ontology/bibo/ - - - stable - - A conversation between two or more people where questions are asked by the interviewer to obtain information from the interviewee. - http://purl.org/ontology/bibo/ - A formalized discussion between two or more people. - radio or newspaper interview - - - http://purl.org/ontology/bibo/ - stable - something that is printed or published and distributed, esp. a given number of a periodical - Short Definition from the bibo ontology - something that is printed or published and distributed, esp. a given number of a periodical - - - - - - - - - - A patent is an exclusive right granted for an invention, which is a product or a process that provides, in general, a new way of doing something, or offers a new technical solution to a problem. In order to be patentable, the invention must fulfill certain conditions. (http://www.wipo.int/patentscope/en/) - - - - A document describing the exclusive right granted by a government to an inventor to manufacture, use, or sell an invention for a certain number of years. - stable - http://purl.org/ontology/bibo/ - (from BIBO) A document describing the exclusive right granted by a government to an inventor to manufacture, use, or sell an invention for a certain number of years - - - - - - - - - Short Definition from the bibo ontology - http://purl.org/ontology/bibo/ - An excerpted collection of words. - stable - - An excerpted collection of words - - - Contains news articles, opinions, features, advertising, and is usually issued daily or weekly - A periodical of documents, usually issued daily or weekly, containing current news, editorials, feature articles, and usually advertising. - USA Today - stable - - http://purl.org/ontology/bibo/ - - - - - - - - - Journal of Information Science; IEEE Intelligent System; Scientometrics - Contains original scholarly research or review articles by experts in the field - A periodical of scholarly journal Articles. - stable - Articles usually contain abstracts and bibliographies. Includes peer-reviewed, non-peer-reviewed, and open access journals. Journals are usually indexed in the major academic databases such as PubMed and Web of Science. - - http://purl.org/ontology/bibo/ - - - - A document accompanying a legal case. - Official court papers for a case - http://purl.org/ontology/bibo/ - unstable - - - stable - Collection of legal cases - A collection of legal cases. - - Supreme Court Reporter - http://purl.org/ontology/bibo/ - - - - - - A personal communication manifested in some document. - A personal communication manifested in some document. - - - Contains articles of current events or general interest, geared to the reading public as being informative or recreational - - A periodical of magazine Articles. A magazine is a publication that is issued periodically, usually bound in a paper cover, and typically contains essays, stories, poems, etc., by many writers, and often photographs and drawings, frequently specializing in a particular subject or area, as hobbies, news, or sports. - stable - Abstracts and bibliographies are usually not included in magazines. - New Yorker - http://purl.org/ontology/bibo/ - - - http://purl.org/ontology/bibo/ - The academic degree of a Thesis. - The academic degree of a Thesis - Doctor of Philosophy (Ph.D.) - Different from general academic degree, thesis degree is achieved through one's completed thesis. Thesis is a document submitted in support of candidature for a degree or professional qualification presenting the author's research and findings(http://en.wikipedia.org/wiki/Thesis_or_dissertation). - - stable - - - - - - photograph; diagram - stable - http://purl.org/ontology/bibo/ - A document that presents visual or diagrammatic information. - - - - A visual representation such as a photograph or graph - - - Methods in Molecular Biology - - - - - - - - - - http://purl.org/ontology/bibo/ - A thematic collection of documents, usually books, issued at regular or irregular intervals - A loose, thematic, collection of Documents, often Books. - - - - - - - - - stable - - - Works created to satisfy the requirements for an academic certification or degree; also called dissertation - http://purl.org/ontology/bibo/ - - - - - - - stable - A document created to summarize research findings associated with the completion of an academic degree. - Short Definition from OCLC Input Standards, EntW - - - - - - - - - - - - A bounded physical representation of a body of information designed with the capacity (and usually intent) to communicate - - - - - - - - - - Short Definition from the bibo ontology - - - - - - - stable - http://purl.org/ontology/bibo/ - - - - - - - - - - - - - - - A document (noun) is a bounded physical representation of body of information designed with the capacity (and usually intent) to communicate. A document may manifest symbolic, diagrammatic or sensory-representational information. - - - - - - - - - A presentation of a series of slides, usually presented in front of an audience with written text and images. - http://purl.org/ontology/bibo/ - stable - Short Definition from the bibo ontology - - A presentation of a series of slides, usually presented in front of an audience with written text and images - - - stable - Draft legislation presented for discussion to a legal body. - - Draft legislation presented for discussion to a legal body - http://purl.org/ontology/bibo/ - Short Definition from the bibo ontology - - - A specific academic journal article - Written by scholars for other scholars, typically published in an academic journal with an abstract and bibliography - http://purl.org/ontology/bibo/ - - - - - - - - - - - - - - - A scholarly academic article, typically published in a journal. - - - - stable - - - unstable - http://purl.org/ontology/bibo/ - A document that presents authoritative reference information, such as a dictionary or encylopedia . - A document that presents authoritative reference information, such as a dictionary or encylopedia - - Short Definition from the bibo ontology - - - SDB User Manual - http://purl.org/ontology/bibo/ - A book of instructions or guide to a specific topic - unstable - A small reference book, especially one giving instructions. - - - - Bibo Definition: A seminar, discussion group, or the like, that emphasizes exchange of ideas and the demonstration and application of techniques, skills, etc. - http://purl.org/ontology/bibo/ - - stable - A seminar, discussion group, or the like, that emphasizes zxchange of ideas and the demonstration and application of techniques, skills, etc. - - - - - - - - - An edited book. - - - - - - - - - http://purl.org/ontology/bibo/ - Best American Science Writing 2009 - - stable - An edited collection of stand-alone articles published as a book - - - - - - - - - http://purl.org/ontology/bibo/ - The Short Definition is how the bibo ontology defines Map. It has been extended to include more broader concept of map which includes science maps, social network maps. - A graphical depiction of geographic features. - A graphical depiction of geographic features, scientific discipline, scientific data analytical results - - unstable - - - - - - - - - - - - - - - - - - - - http://purl.org/ontology/bibo/ - A specific journal article - - - - - - - - - A written composition in prose, usually nonfiction, on a specific topic, forming an independent part of a periodical or book - Short Definition modified from the bibo ontology. - A written composition in prose, usually nonfiction, on a specific topic, forming an independent part of a book or other publication, as a newspaper or magazine. - stable - - - Short Definition from the bibo ontology - http://purl.org/ontology/bibo/ - - A slide in a slideshow - A slide in a slideshow - unstable - - - A meeting for consultation or discussion. - - core:Seminar and bibo:Conference are very similar. - 2010 International Congress on Autoimmunity; American Libraries Association 2009 - A meeting for consultation or discussion. - - - - - - - http://purl.org/ontology/bibo/ - stable - - - http://purl.org/ontology/bibo/ - Works prepared by hand including handwritten or typescript drafts of pre-publication papers or works not otherwise reproduced in multiple copies - An unpublished Document, which may also be submitted to a publisher for publication. - Short Definition is the Medical Subject Heading (MeSH) definition - stable - - - - A bill enacted into law. - - A bill enacted into law - stable - http://purl.org/ontology/bibo/ - Short Definition from bibo ontology - - - http://purl.org/ontology/bibo/ - The source of the public description and this info is found here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html. Bibo considers this term "unstable". The bibo editorial note is: "We are not defining, using an enumeration, the range of the bibo:degree to the defined list of bibo:ThesisDegree. We won't do it because we want people to be able to define new degress if needed by some special usecases. Creating such an enumeration would restrict this to happen." - unstable - We are not defining, using an enumeration, the range of the bibo:degree to the defined list of bibo:ThesisDegree. We won't do it because we want people to be able to define new degress if needed by some special usecases. Creating such an enumeration would restrict this to happen. - - The thesis degree. - - - - Public Description from source: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . Bibo considers the bibo:presents and the bibo:presentedAt unstable terms. It also indicates that bibo:presents is a sub-property of event:product. - - - - http://purl.org/ontology/bibo/ - - Relates an event to associated documents; for example, conference to a paper. - unstable - - - - - stable - http://purl.org/ontology/bibo/ - Definition take from this site: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . - A Film director. - - - - - A legal decision that affirms a ruling. - The public description was taken from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html - - - http://purl.org/ontology/bibo/ - - - - - - stable - http://purl.org/ontology/bibo/ - - - - - - - - - - - - - - Critical or explanatory note for a Document. - The public description source is: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html. - stable - http://purl.org/ontology/bibo/ - - - - An entity responsible for issuing often informally published documents such as press releases, reports, etc. This term is classified as unstable by bibo. - An entity responsible for issuing often informally published documents such as press releases, reports, etc. - http://purl.org/ontology/bibo/ - - unstable - - - - unstable - - - - http://purl.org/ontology/bibo/ - Public Description from source: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . Bibo considers the bibo:presents and the bibo:presentedAt unstable terms. It also indicates that bibo:presents is a sub-property of event:product. - - Relates a document to an event; for example, a paper to a conference. - - - - Definition from bibo: A person having managerial and sometimes policy-making responsibility for the editorial part of a publishing firm or of a newspaper, magazine, or other publication. - - - - - A legal decision that reverses a ruling. - http://purl.org/ontology/bibo/ - The first sentence of the public description was taken from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html - - - - - - - - - An agent that receives a communication document. - stable - http://purl.org/ontology/bibo/ - - - - - - - - - - - - http://purl.org/ontology/bibo/ - stable - An agent that is interviewed by another agent. - - - http://purl.org/ontology/bibo/ - - Public description take from: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html. Bibo considers this property "unstable". - - A court associated with a legal document; for example, that which issues a decision. - unstable - - - - - - - - - - - - - - Public Description for bibo:distributor taken from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . - - - - An agent that interview another agent. - - stable - http://purl.org/ontology/bibo/ - - - - A legal decision on appeal that takes action on a case (affirming it, reversing it, etc.). - - Public description is from comments of this object property in bibo ontology located here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html - - - http://purl.org/ontology/bibo/ - - - - http://purl.org/ontology/bibo/ - Relates a translated document to the original document. - stable - - Examples shows a book has French language version. Public description source: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . - - - - paraphrased editorial note from the bibo ontology: We are not defining, using an enumeration, the range of the bibo:status to be a defined list of bibo:DocumentStatus. This is because we want people to be able to define new statuses if needed; and creating such an enumeration would prevent this. - - - - unstable - - - http://purl.org/ontology/bibo/ - The bibo:transcriptOf public description was found here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . Bibo considers this term unstable. - Relates a document to some transcribed original. - - - - The bibo:reviewOf public description was found here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . As of 26 May 2010, bibo:reviewOf is used with the class Review, but core:reviewIn doesn't seem to be being used. - - - - - stable - An identifier of serials, still in use by libraries, but replaced by ISSN for any new work - http://purl.org/ontology/bibo/ - CODEN became particularly common in the scientific community as a citation system for periodicals cited in technical- as well in chemistry-related publications and as a search tool in many bibliographic catalogues. -Definition and description came from Wikipedia here: http://en.wikipedia.org/wiki/CODEN - - - - - - - - - - A summary of the resource. - stable - - http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html - http://purl.org/dc/terms/ - - - stable - The prefix of a name - - http://purl.org/ontology/bibo/ - Mr; Ms; Mrs - - http://dictionary.reference.com/browse/prefix - - - Definition source: http://en.wikipedia.org/wiki/European_Article_Numbering-Uniform_Code_Council. -The Uniform Code Council (UCC) was the Numbering Organization in the USA to administer and manage the EAN.UCC System. In 2005 the UCC changed its name to GS1 US. - http://purl.org/ontology/bibo/ - stable - European Article Number/Uniform Commercier Code 13 - - - - - - Source: http://en.wikipedia.org/wiki/Library_of_Congress_Control_Number. - Library of Congress Control Number - - - - stable - http://purl.org/ontology/bibo/ - - - - - - stable - http://info-uri.info/registry/OAIHandler?verb=GetRecord&metadataPrefix=reg&identifier=info:oclcnum/. - - -bibo has the domain of this property set to the union of Collection and Document. - OCLC Identifier - http://purl.org/ontology/bibo/ - - - - - - - - - An section number - http://purl.org/ontology/bibo/ - Di Rado, Alicia. 1995. Trekking through college: Classes explore -modern society using the world of Star trek. Los Angeles Times, March -15, sec. A, p. 3. - unstable - - - Serial Item and Contribution Identifier - - - - stable - A sub property of identifier (http://en.wikipedia.org/wiki/SICI). - http://purl.org/ontology/bibo/ - - - Global Trade Item Number 14 - http://en.wikipedia.org/wiki/Global_Trade_Item_Number. - http://purl.org/ontology/bibo/ - stable - - - - - - http://purl.org/ontology/bibo/ - - - - stable - Digital Object Identifier - - - Bibo has the domain of bibo:issue as the class Issue, but an example on their site uses it with Article, referring to the issue number "4" - - - - - - - - Starting page number within a continuous page range. - - - - - http://purl.org/ontology/bibo/ - stable - - - http://purl.org/ontology/bibo/ - The idea here is that while dcterms:description may involve length descriptions, this for short (two or three word) descriptions that could go in a bibliographic entry. - unstable - A short description of the resource. - - - - http://purl.org/ontology/bibo/ - - stable - definition from: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html - A description (often numeric) that locates an item within a containing document or collection. - - - - International Standard Serial Number - stable - http://purl.org/ontology/bibo/ - source: http://en.wikipedia.org/wiki/Issn - - - An chapter number - - Title of the chapter (this individual) currently should be entered in the individual name (rdfs:label). Title of the book belongs on a separate Book individual related to the chapter via the core:partOf property (or its child property bibo:reproducedIn). The core:title field is deprecated and should no longer be used as of version 1.1 -- we will want to map rdfs:label to dc:title for query or linked data requests in the future - http://purl.org/ontology/bibo/ - - unstable - - - http://purl.org/ontology/bibo/ - - stable - source for public description: http://en.wikipedia.org/wiki/Universal_Product_Code. - Universal Product Code - - - stable - http://purl.org/ontology/bibo/ - eissn stands for Electronic International Standard Serial Number. source: http://www.definition-of.com/EISSN - The electronic ISSN number of a periodical. - - - - http://purl.org/ontology/bibo/ - The PubMed ID (PMID) identifies a citation record (rather than full-text) in the PubMed database. It is not evidence of compliance with the NIH Public Access Policy, because it does not identify a full-text submission of any kind. - stable - PubMed Identifier - - - - - Definition from: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html - - - - - - stable - http://purl.org/ontology/bibo/ - The name defining a special edition of a document. Normally its a literal value composed of a version number and words. - - - - - http://en.wikipedia.org/wiki/Isbn. - - - - Ending page number within a continuous page range. - stable - - - http://purl.org/ontology/bibo/ - - - - source: http://en.wikipedia.org/wiki/Isbn. - - - - - - Jr.; III;; M.D. - - stable - The suffix of a name - http://purl.org/ontology/bibo/ - - - 020530902X - - stable - Amazon standard identification number. Source: http://en.wikipedia.org/wiki/Amazon_Standard_Identification_Number. - Amazon Standard Identification Number - http://purl.org/ontology/bibo/ - - - - Definition from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html - - - - diff --git a/productMods/WEB-INF/filegraph/tbox/vivo-bibo-public-1.5.owl b/productMods/WEB-INF/filegraph/tbox/vivo-bibo-public-1.5.owl new file mode 100644 index 00000000..fb97b9d8 --- /dev/null +++ b/productMods/WEB-INF/filegraph/tbox/vivo-bibo-public-1.5.owl @@ -0,0 +1,1585 @@ + + + + Bibontology + + + + + + + + + + + review of + The bibo:reviewOf public description was found here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . As of 26 May 2010, bibo:reviewOf is used with the class Review, but core:reviewIn doesn't seem to be being used. + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + affirmedBy + The public description was taken from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html + http://purl.org/ontology/bibo/ + A legal decision that affirms a ruling. + + + + + + + + + + + annotates + The public description source is: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html. + http://purl.org/ontology/bibo/ + stable + Critical or explanatory note for a Document. + + + + + + + + + + cited by + + + + + + + + + + cites + + + + + + + + + + + court + Public description take from: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html. Bibo considers this property "unstable". + http://purl.org/ontology/bibo/ + unstable + A court associated with a legal document; for example, that which issues a decision. + + + + + + + + + + related degree + The source of the public description and this info is found here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html. Bibo considers this term "unstable". The bibo editorial note is: "We are not defining, using an enumeration, the range of the bibo:degree to the defined list of bibo:ThesisDegree. We won't do it because we want people to be able to define new degress if needed by some special usecases. Creating such an enumeration would restrict this to happen." + http://purl.org/ontology/bibo/ + The thesis degree. + We are not defining, using an enumeration, the range of the bibo:degree to the defined list of bibo:ThesisDegree. We won't do it because we want people to be able to define new degress if needed by some special usecases. Creating such an enumeration would restrict this to happen. + unstable + + + + + + + + + director + Definition take from this site: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . + http://purl.org/ontology/bibo/ + A Film director. + stable + + + + + + + + + interviewee + http://purl.org/ontology/bibo/ + stable + An agent that is interviewed by another agent. + + + + + + + + + interviewer + http://purl.org/ontology/bibo/ + stable + An agent that interview another agent. + + + + + + + + + performer + http://purl.org/ontology/bibo/ + stable + + + + + + + + + + related documents + Public Description from source: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . Bibo considers the bibo:presents and the bibo:presentedAt unstable terms. It also indicates that bibo:presents is a sub-property of event:product. + http://purl.org/ontology/bibo/ + Relates an event to associated documents; for example, conference to a paper. + unstable + + + + + + + + + + recipient + http://purl.org/ontology/bibo/ + stable + An agent that receives a communication document. + + + + + + + + + reproduced in + + + + + + + + + + + reversedBy + The first sentence of the public description was taken from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html + http://purl.org/ontology/bibo/ + A legal decision that reverses a ruling. + + + + + + + + + + + review of + The bibo:reviewOf public description was found here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . As of 26 May 2010, bibo:reviewOf is used with the class Review, but core:reviewIn doesn't seem to be being used. + + + + + + + + + + status + paraphrased editorial note from the bibo ontology: We are not defining, using an enumeration, the range of the bibo:status to be a defined list of bibo:DocumentStatus. This is because we want people to be able to define new statuses if needed; and creating such an enumeration would prevent this. + + + + + + + + + subsequentLegalDecision + Public description is from comments of this object property in bibo ontology located here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html + http://purl.org/ontology/bibo/ + A legal decision on appeal that takes action on a case (affirming it, reversing it, etc.). + + + + + + + + + + transcript of + The bibo:transcriptOf public description was found here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . Bibo considers this term unstable. + http://purl.org/ontology/bibo/ + Relates a document to some transcribed original. + unstable + + + + + + + + + + translation of + Examples shows a book has French language version. Public description source: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . + http://purl.org/ontology/bibo/ + Relates a translated document to the original document. + stable + + + + + + + + + translator + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + has translation + Examples shows a book has French language version. Public description source: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . + + + + + + + + + + + + + + + + + + + + translator of + + + + + + + + + + + + + + abstract + http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html + http://purl.org/dc/terms/ + A summary of the resource. + stable + + + + + + + + + + asin + 020530902X + Amazon standard identification number. Source: http://en.wikipedia.org/wiki/Amazon_Standard_Identification_Number. + http://purl.org/ontology/bibo/ + Amazon Standard Identification Number + stable + + + + + + + + + chapter + Title of the chapter (this individual) currently should be entered in the individual name (rdfs:label). Title of the book belongs on a separate Book individual related to the chapter via the core:partOf property (or its child property bibo:reproducedIn). The core:title field is deprecated and should no longer be used as of version 1.1 -- we will want to map rdfs:label to dc:title for query or linked data requests in the future + http://purl.org/ontology/bibo/ + An chapter number + unstable + + + + + + + + + + coden + CODEN became particularly common in the scientific community as a citation system for periodicals cited in technical- as well in chemistry-related publications and as a search tool in many bibliographic catalogues. +Definition and description came from Wikipedia here: http://en.wikipedia.org/wiki/CODEN + http://purl.org/ontology/bibo/ + An identifier of serials, still in use by libraries, but replaced by ISSN for any new work + stable + + + + + + + + Digital Object Identifier (DOI) + http://purl.org/ontology/bibo/ + stable + Digital Object Identifier + + + + + + + + + EAN International-Uniform Code Council (EAN-UCC) 13 + Definition source: http://en.wikipedia.org/wiki/European_Article_Numbering-Uniform_Code_Council. +The Uniform Code Council (UCC) was the Numbering Organization in the USA to administer and manage the EAN.UCC System. In 2005 the UCC changed its name to GS1 US. + http://purl.org/ontology/bibo/ + European Article Number/Uniform Commercier Code 13 + stable + + + + + + + + + edition + http://purl.org/ontology/bibo/ + The name defining a special edition of a document. Normally its a literal value composed of a version number and words. + stable + + + + + + + + + Electronic International Standard Serial Number (EISSN) + eissn stands for Electronic International Standard Serial Number. source: http://www.definition-of.com/EISSN + http://purl.org/ontology/bibo/ + stable + The electronic ISSN number of a periodical. + + + + + + + + + gtin14 + http://en.wikipedia.org/wiki/Global_Trade_Item_Number. + http://purl.org/ontology/bibo/ + stable + Global Trade Item Number 14 + + + + + + + + + identifier + + + + + + + + + + + + + + + + + + International Standard Book Number (ISBN) 10 + http://en.wikipedia.org/wiki/Isbn. + + + + + + + + + + + International Standard Book Number (ISBN) 13 + source: http://en.wikipedia.org/wiki/Isbn. + + + + + + + + + + International Standard Serial Number (ISSN) + http://purl.org/ontology/bibo/ + source: http://en.wikipedia.org/wiki/Issn + stable + International Standard Serial Number + + + + + + + + + + issue + Bibo has the domain of bibo:issue as the class Issue, but an example on their site uses it with Article, referring to the issue number "4" + + + + + + + + + Library of Congress Control Number (LCCN) + Source: http://en.wikipedia.org/wiki/Library_of_Congress_Control_Number. + http://purl.org/ontology/bibo/ + stable + Library of Congress Control Number + + + + + + + + + locator + definition from: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html + http://purl.org/ontology/bibo/ + stable + A description (often numeric) that locates an item within a containing document or collection. + + + + + + + + + number of pages + + + + + + + + + + number + Definition from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html + + + + + + + + + Online Computer Library Center (OCLC) number + http://info-uri.info/registry/OAIHandler?verb=GetRecord&metadataPrefix=reg&identifier=info:oclcnum/. + + +bibo has the domain of this property set to the union of Collection and Document. + http://purl.org/ontology/bibo/ + stable + OCLC Identifier + + + + + + + + + + end page + http://purl.org/ontology/bibo/ + stable + Ending page number within a continuous page range. + + + + + + + + + + start page + http://purl.org/ontology/bibo/ + stable + Starting page number within a continuous page range. + + + + + + + + + PubMed Identifier + The PubMed ID (PMID) identifies a citation record (rather than full-text) in the PubMed database. It is not evidence of compliance with the NIH Public Access Policy, because it does not identify a full-text submission of any kind. + http://purl.org/ontology/bibo/ + stable + PubMed Identifier + + + + + + + + + + + name prefix + Mr; Ms; Mrs + http://dictionary.reference.com/browse/prefix + http://purl.org/ontology/bibo/ + stable + The prefix of a name + + + + + + + + + section + http://purl.org/ontology/bibo/ + An section number + Di Rado, Alicia. 1995. Trekking through college: Classes explore +modern society using the world of Star trek. Los Angeles Times, March +15, sec. A, p. 3. + unstable + + + + + + + + + short description + http://purl.org/ontology/bibo/ + A short description of the resource. + unstable + The idea here is that while dcterms:description may involve length descriptions, this for short (two or three word) descriptions that could go in a bibliographic entry. + + + + + + + + + sici + A sub property of identifier (http://en.wikipedia.org/wiki/SICI). + http://purl.org/ontology/bibo/ + Serial Item and Contribution Identifier + stable + + + + + + + + + + name suffix + Jr.; III;; M.D. + http://purl.org/ontology/bibo/ + stable + The suffix of a name + + + + + + + + + upc + http://purl.org/ontology/bibo/ + source for public description: http://en.wikipedia.org/wiki/Universal_Product_Code. + stable + Universal Product Code + + + + + + + + + + URI + Definition from: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html + + + + + + + + + + volume + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Academic Article + + A specific academic journal article + Written by scholars for other scholars, typically published in an academic journal with an abstract and bibliography + http://purl.org/ontology/bibo/ + A scholarly academic article, typically published in a journal. + stable + + + + + + + + Article + + A specific journal article + A written composition in prose, usually nonfiction, on a specific topic, forming an independent part of a periodical or book + Short Definition modified from the bibo ontology. + http://purl.org/ontology/bibo/ + stable + A written composition in prose, usually nonfiction, on a specific topic, forming an independent part of a book or other publication, as a newspaper or magazine. + + + + + + + + Audio Document + + Recorded audio in any format + http://purl.org/ontology/bibo/ + phonograph record; tape; CD; DVD; DAT + stable + An audio document; aka record. + + + + + + + + Audio-Visual Document + + Audiovisual recording in any format + film; video; Blu-ray + http://purl.org/ontology/bibo/ + An audio-visual document; film, video, and so forth. + stable + + + + + + + + Bill + + Draft legislation presented for discussion to a legal body + Short Definition from the bibo ontology + http://purl.org/ontology/bibo/ + stable + Draft legislation presented for discussion to a legal body. + + + + + + + + Book + + A written or printed work of fiction or nonfiction, usually on sheets of paper fastened or bound together within covers + Short Definition copied from bibo ontology + http://purl.org/ontology/bibo/ + A written or printed work of fiction or nonfiction, usually on sheets of paper fastened or bound together within covers. + stable + + + + + + + + Book Section + + A section of a book + Short Definition from the bibo ontology + http://purl.org/ontology/bibo/ + unstable + A section of a book. + + + + + + + + Brief + + A document stating the facts and points of law of a client's case + http://purl.org/ontology/bibo/ + unstable + A written argument submitted to a court. + + + + + + + + Chapter + + A main division of a book + http://purl.org/ontology/bibo/ + A chapter of a book. + unstable + + + + + + + + Code + + A work consisting of texts of rules and regulations related to statutes issued by executive or administrative agencies + Code of Federal Regulations + Short Definition from OCLC Input Standards, EntW + http://purl.org/ontology/bibo/ + A collection of statutes. + stable + + + + + + + + Collected Document + + Short Definition is the Medical Subject Heading (MeSH) definition + Work consisting of collections of previously published works + http://purl.org/ontology/bibo/ + stable + A document that simultaneously contains other documents. + + + + + + + + Collection + Collection of information resources that have a unified identity + Collection of information resources that have a unified identity. Archives, museums and libraries often acquire collections on specific subjects and from distinguished authors or researchers. Also includes collections of resources bundled into a license. + Hill Ornithology Collection; Wiley Interscience Online Books Biochemisty Collection + http://purl.org/ontology/bibo/ + stable + A collection of Documents or Collections + + + + + + + + Conference + + 2010 International Congress on Autoimmunity; American Libraries Association 2009 + A meeting for consultation or discussion. + core:Seminar and bibo:Conference are very similar. + http://purl.org/ontology/bibo/ + A meeting for consultation or discussion. + stable + + + + + + + + Court Reporter + + Collection of legal cases + Supreme Court Reporter + http://purl.org/ontology/bibo/ + stable + A collection of legal cases. + + + + + + + + Document + A bounded physical representation of a body of information designed with the capacity (and usually intent) to communicate + Short Definition from the bibo ontology + http://purl.org/ontology/bibo/ + A document (noun) is a bounded physical representation of body of information designed with the capacity (and usually intent) to communicate. A document may manifest symbolic, diagrammatic or sensory-representational information. + stable + + + + + + + + Document Part + + A distinct part of a larger document or collected document + Short Definition from the bibo ontology + http://purl.org/ontology/bibo/ + a distinct part of a larger document or collected document. + unstable + + + + + + + + Edited Book + + An edited collection of stand-alone articles published as a book + Best American Science Writing 2009 + http://purl.org/ontology/bibo/ + stable + An edited book. + + + + + + + + Excerpt + + A passage selected from a larger work + Short Definition from the bibo ontology + http://purl.org/ontology/bibo/ + stable + A passage selected from a larger work. + + + + + + + + Film + + Audiovisual recording in film format + http://purl.org/ontology/bibo/ + aka movie. + stable + + + + + + + + Hearing + + An instance or a session in which testimony and arguments are presented, esp. before an official, as a judge in a lawsuit. + Definiton from Bibo here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html + http://purl.org/ontology/bibo/ + An instance or a session in which testimony and arguments are presented, esp. before an official, as a judge in a lawsuit. + stable + + + + + + + + Image + + + + A visual representation such as a photograph or graph + http://purl.org/ontology/bibo/ + photograph; diagram + A document that presents visual or diagrammatic information. + stable + + + + + + + + Interview + + A conversation between two or more people where questions are asked by the interviewer to obtain information from the interviewee. + http://purl.org/ontology/bibo/ + radio or newspaper interview + A formalized discussion between two or more people. + stable + + + + + + + + Issue + + Short Definition from the bibo ontology + http://purl.org/ontology/bibo/ + something that is printed or published and distributed, esp. a given number of a periodical + something that is printed or published and distributed, esp. a given number of a periodical + stable + + + + + + + + Journal + + Articles usually contain abstracts and bibliographies. Includes peer-reviewed, non-peer-reviewed, and open access journals. Journals are usually indexed in the major academic databases such as PubMed and Web of Science. + Contains original scholarly research or review articles by experts in the field + Journal of Information Science; IEEE Intelligent System; Scientometrics + http://purl.org/ontology/bibo/ + stable + A periodical of scholarly journal Articles. + + + + + + + + Legal Case Document + + Official court papers for a case + http://purl.org/ontology/bibo/ + A document accompanying a legal case. + unstable + + + + + + + + Decision + + The written determination of a case, motion or claim by a court or tribunal + http://purl.org/ontology/bibo/ + unstable + A document containing an authoritative determination (as a decree or judgment) made after consideration of facts or law. + + + + + + + + Legal Document + + a document that states some contractual relationship or grants some right + http://purl.org/ontology/bibo/ + A legal document; for example, a court decision, a brief, and so forth. + stable + + + + + + + + Legislation + + Enactments of legislative bodies, published in either statute or code form + From OCLC Input Standards, EntW + http://purl.org/ontology/bibo/ + A legal document proposing or enacting a law or a group of laws. + unstable + + + + + + + + Letter + + A written or printed communication addressed to a person or organization and usually transmitted by mail + A written or printed communication addressed to a person or organization and usually transmitted by mail + + + + + + + + Magazine + + Abstracts and bibliographies are usually not included in magazines. + Contains articles of current events or general interest, geared to the reading public as being informative or recreational + New Yorker + http://purl.org/ontology/bibo/ + A periodical of magazine Articles. A magazine is a publication that is issued periodically, usually bound in a paper cover, and typically contains essays, stories, poems, etc., by many writers, and often photographs and drawings, frequently specializing in a particular subject or area, as hobbies, news, or sports. + stable + + + + + + + + Manual + + A book of instructions or guide to a specific topic + SDB User Manual + http://purl.org/ontology/bibo/ + A small reference book, especially one giving instructions. + unstable + + + + + + + + Manuscript + + Short Definition is the Medical Subject Heading (MeSH) definition + Works prepared by hand including handwritten or typescript drafts of pre-publication papers or works not otherwise reproduced in multiple copies + http://purl.org/ontology/bibo/ + An unpublished Document, which may also be submitted to a publisher for publication. + stable + + + + + + + + Map + + A graphical depiction of geographic features, scientific discipline, scientific data analytical results + The Short Definition is how the bibo ontology defines Map. It has been extended to include more broader concept of map which includes science maps, social network maps. + http://purl.org/ontology/bibo/ + A graphical depiction of geographic features. + unstable + + + + + + + + Newspaper + + Contains news articles, opinions, features, advertising, and is usually issued daily or weekly + USA Today + http://purl.org/ontology/bibo/ + stable + A periodical of documents, usually issued daily or weekly, containing current news, editorials, feature articles, and usually advertising. + + + + + + + + Note + + Notes or annotations about a resource + Short Definition from bibo ontology + http://purl.org/ontology/bibo/ + stable + Notes or annotations about a resource. + + + + + + + + Patent + + (from BIBO) A document describing the exclusive right granted by a government to an inventor to manufacture, use, or sell an invention for a certain number of years + A patent is an exclusive right granted for an invention, which is a product or a process that provides, in general, a new way of doing something, or offers a new technical solution to a problem. In order to be patentable, the invention must fulfill certain conditions. (http://www.wipo.int/patentscope/en/) + http://purl.org/ontology/bibo/ + stable + A document describing the exclusive right granted by a government to an inventor to manufacture, use, or sell an invention for a certain number of years. + + + + + + + + Performance + + Something carried out, acted or rendered. + http://purl.org/ontology/bibo/ + unstable + A public performance. + + + + + + + + Periodical + + http://purl.org/ontology/bibo/ + stable + A group of related documents issued at regular intervals. + + + + + + + + Personal Communication Document + + A personal communication manifested in some document. + A personal communication manifested in some document. + + + + + + + + Proceedings + + A compilation of documents published from an event, such as a conference + Short Definition copied from bibo ontology + http://purl.org/ontology/bibo/ + unstable + A compilation of documents published from an event, such as a conference. + + + + + + + + Quote + + An excerpted collection of words + Short Definition from the bibo ontology + http://purl.org/ontology/bibo/ + An excerpted collection of words. + stable + + + + + + + + Reference Source + + A document that presents authoritative reference information, such as a dictionary or encylopedia + Short Definition from the bibo ontology + http://purl.org/ontology/bibo/ + unstable + A document that presents authoritative reference information, such as a dictionary or encylopedia . + + + + + + + + Report + + A document describing an account or statement describing in detail an event, situation, or the like, usually as the result of observation, inquiry, etc. + Medical Subject Heading (MeSH) definition of Technical Report: Work consisting of a formal report giving details of the investigation and results of a medical or other scientific problem. When issued by a government agency or comparable official body, its contents may be classified, unclassified, or declassified with regard to security clearance. This publication type may also cover a scientific paper or article that records the current state or current position of scientific research and development. If so labeled by the editor or publisher, this publication type may be properly used for journal articles. + http://purl.org/ontology/bibo/ + stable + A document describing an account or statement describing in detail an event, situation, or the like, usually as the result of observation, inquiry, etc.. + + + + + + + + Series + + A thematic collection of documents, usually books, issued at regular or irregular intervals + Methods in Molecular Biology + http://purl.org/ontology/bibo/ + A loose, thematic, collection of Documents, often Books. + stable + + + + + + + + Slide + + A slide in a slideshow + Short Definition from the bibo ontology + http://purl.org/ontology/bibo/ + A slide in a slideshow + unstable + + + + + + + + Slideshow + + A presentation of a series of slides, usually presented in front of an audience with written text and images + Short Definition from the bibo ontology + http://purl.org/ontology/bibo/ + A presentation of a series of slides, usually presented in front of an audience with written text and images. + stable + + + + + + + + Standard + + A specification giving a precise statement of a process or a service requirement, often sanctioned by a nation or industry + Short Definition from OCLC Input Standards, EntW + http://purl.org/ontology/bibo/ + A document describing a standard + stable + + + + + + + + Statute + + A bill enacted into law + Short Definition from bibo ontology + http://purl.org/ontology/bibo/ + A bill enacted into law. + stable + + + + + + + + Thesis + + Short Definition from OCLC Input Standards, EntW + Works created to satisfy the requirements for an academic certification or degree; also called dissertation + http://purl.org/ontology/bibo/ + A document created to summarize research findings associated with the completion of an academic degree. + stable + + + + + + + + Webpage + + One section of a website that appears at a unique address within the parent site's address or URL on the World Wide Web + http://purl.org/ontology/bibo/ + A web page is an online document available (at least initially) on the world wide web. A web page is written first and foremost to appear on the web, as distinct from other online resources such as books, manuscripts or audio documents which use the web primarily as a distribution mechanism alongside other more traditional methods such as print. + unstable + + + + + + + + Website + + A group of webpages available within a specific parent address or URL on the World Wide Web + Facebook; VIVOweb.org; Flickr + http://purl.org/ontology/bibo/ + A group of Webpages accessible on the Web. + unstable + + + + + + + + Workshop + + Bibo Definition: A seminar, discussion group, or the like, that emphasizes exchange of ideas and the demonstration and application of techniques, skills, etc. + http://purl.org/ontology/bibo/ + A seminar, discussion group, or the like, that emphasizes zxchange of ideas and the demonstration and application of techniques, skills, etc. + stable + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/productMods/WEB-INF/filegraph/tbox/vivo-c4o-1.5.owl b/productMods/WEB-INF/filegraph/tbox/vivo-c4o-public-1.5.owl similarity index 72% rename from productMods/WEB-INF/filegraph/tbox/vivo-c4o-1.5.owl rename to productMods/WEB-INF/filegraph/tbox/vivo-c4o-public-1.5.owl index bb6f0493..d480440c 100644 --- a/productMods/WEB-INF/filegraph/tbox/vivo-c4o-1.5.owl +++ b/productMods/WEB-INF/filegraph/tbox/vivo-c4o-public-1.5.owl @@ -1,4 +1,6 @@ + + Citation Counting and Context Characterization Ontology + + Bibliographic Information Source A source of information about bibliographic citations, such as Google Scholar, Web of Science or Scopus. + Global Citation Count The number of times a work has been cited globally, as determined from a particular bibliographic information source on a particular date. + has global citation frequency A property linking a publication entity to the property c40:GlobalCitationCount that specify how many times a work has been cited by others, according to a particular information source on a particular date. + >A property linking a publication entity to an instance of c40:GlobalCitationCount that specifies how many times a work has been cited by others, according to a particular information source on a particular date. - A property linking the property c40:GlobalCitationCount to the bibliographic information source providing the global citation count information for a particular publication on a particular date. + >A property linking an instance of c40:GlobalCitationCount to the bibliographic information source providing the global citation count information for a particular publication on a particular date. + + has global count source - - An integer defining the value of the global citation count of a cited entity recorded from a named bibliographic information source on a particular date. + + + has global count value + has global count date - - - - - - - - - - 0.7 - - - - - - 0.1 - - - Legal (department within a company); Use for any non-academic department - Definition modified from the definition here: http://dictionary.reference.com/browse/department. It is difficult to tell the difference between and department and a division. - - - - - - - - - - - A distinct, usually ongoing and specialized unit within a large organization. - - - - - - 2 - - - - - - - Independent organizations formally working together toward a common goal, under an expressed agreement - Committee on Institutional Cooperation (CIC); The Five Colleges of Ohio - - - - - - - - - - - Enter room number of name. - 100 Caldwell Hall; 114 Martha Van Rensselaer (Rushmore Conference Room) - - - - Room that provides a particular service or is used for a particular activity. - - - - - - - - - - - There could be many subclasses such as thesis committee or tenure committee, but these may typically be differentiated via the moniker unless distinct properties become important. - Curriculum Steering Committee; PhD Advisory Committee - A group of people organized for a specific purpose (e.g., a reporting or advisory role), often with a charge and for a specific duration. - - - - An institution for instruction in a particular skill or field. - School of Architecture; School of Music - - Definition take from here: http://dictionary.reference.com/browse/school. - - - - - - Role of a person to direct a project or activity being supported by an Agreement (for example, a grant), and who is accountable to the grantee for the proper conduct of the project or activity. Also known as Program Director or Project Director. - - - - - - An explicit individual academic term, quarter, or semester rather than the generic fall, spring or summer semester. - - - - - - F1000, is a place where faculty go to critique papers published in PubMed. Any given record in F1000 might have anywhere from one to dozens of reviews. - - - - - - Short Definition take from http://en.wiktionary.org/wiki/continent. - The seven commonly recognized continents are Africa; Antarctica; Asia; Australia; Europe; North America; South America - A large contiguous landmass that is at least partially surrounded by water, together with any islands on its continental shelf. - - - A specific blog posting - - - - - - - - - - - - An online article or commentary appearing on a blog - - - - - - A lab providing services such as training, protocols, or access to instruments or software - - - A qualitative descriptive research study of individuals or a group - - A form of qualitative descriptive research that is used to study individuals, a small group of participants, or a group as a whole. Medical usage (from MeSH): clinical presentations that may be followed by evaluative studies that eventually lead to a diagnosis. - - - An organized series of a meeting for an exchange of ideas, typically put on by a department or center. - - - - Applied Microeconomics Seminars; Future of Rural New York Seminar Series - For individual seminars, use seminar instead. core:ConferenceSeries and core:SeminarSeries are very similar. - - - Definition obtained here: http://answers.ask.com/Business/Finance/what_is_a_private_company. Examples of private companies found here: http://www.forbes.com/2008/11/03/largest-private-companies-biz-privates08-cx_sr_1103private_land.html - - - - Publix Super Markets; Ernst & Young; PricewaterhouseCoopers - A private company is one that is privately-owned, and thus, is not publicly-traded in the stock market. Members of the general public cannot purchase stock in a private company unless that company chooses to go public and become a public company. - - - - An article reviewing one or more other information resources (a book, one or more other articles, movies, etc) - - - - - - - - - - - - - 1 - - - - - - An academic degree at any level, both as reported by individuals for employment and as offered by academic degree programs. - - - 1 - - - - - - This list may have multiple abbreviations for some degrees. - B.A. Bachelor of Arts - - - US postal address follow the format street, apt or office number (optional), city, state, and zipcode. - - - 1 - - - - - - 1320 East 10th Street, Wells Library 021 Bloomington, IN 47405 - - - - - - 1 - - - - - - Formal address in US postal address system. - - - 1 - - - - - - - - A broad-ranging leader concept, from leading a small temporary committee to head of a large international organization. - - - - A leadership role - - - - An institution of higher education and research, which grants academic degrees in a variety of subjects, and provides both undergraduate education and postgraduate education. - University of Florida; Washington University in St. Louis - - - - - - - - - Definition taken from: http://en.wikipedia.org/wiki/University - - - Use only if no specific subclasses of core:Student describe the person. - - A person who is enrolled in an educational institution. - - - One of a number of areas or communities having their own governments and forming a federation under a sovereign government, as in the US. - - - - Source of the Short Definition: http://www.thefreedictionary.com/state. - Minnesota; Michigan; Indiana; New York; Quebec; Manitoba; Ontario - - - - - - A role that encompasses both ongoing reviewer responsibility for a bibo:Collection, such as a Journal or Series, and also a review performed for a bibo:Document, such as a book, academic article or conference paper. - A role that encompasses both ongoing reviewer responsibility for a bibo:Collection, such as a Journal or Series, and also a review performed for a bibo:Document, such as a book, academic article or conference paper. - - - It's anticipated that the subclasses will be used when classifying items. And, all locations can be viewable via this class. - Use subclasses of core:Location when classsifying items. - Top level of all location classes. - - - - - - A role in an Agreement (for example, a grant) as a named investigator or key personnel. - - - College of Arts & Sciences; Ivy Tech Community College - - - - - - - - - - A primary academic unit within a University or a free-standing higher education organization without graduate degree programs. - - - - - - see also core:Certificate - An issued certificate - - - - A document created as a basis for discussion or a very early draft of a formal paper - - - - - - - - - - - - A retired librarian who has retained their rank, title and privileges. - - - - - - A role of observing or treating patients - - - from Wikipedia: "A company is a form of business organization. It is an association or collection of individual real persons and/or other companies ... This collection, group or association of persons can be made to exist in law and then a company is itself considered a "legal person". The name company arose because, at least originally, it represented or was owned by more than one real or legal person." - a legally-recognized business organization - - - - a specific period or duration, defined by (optional) start and end date/times. - - - A position classified as professional, staff, support, or any other non-academic role - - - - Staff, support, and other non-academic positions. - - - - - - - - - - - - - - - - - - - Accounting & Research Services Assistant; Director of Information Technology - - - - - - A granted license, which gives a 'permission to practice.' Such licenses are usually issued in order to regulate some activity that is deemed to be dangerous or a threat to the person or the public or which involves a high level of specialized skill. See also core:License. - A granted license, which gives a 'permission to practice.' - - - - - - A retired professor who has retained their rank, title and privileges. - - - - is a generic term for a process of self-regulation by a profession or a process of evaluation involving qualified individuals within the relevant field. Peer review methods are employed to maintain standards, improve performance and provide credibility. In academia the term is often used to denote a prepublication review of academic papers; reviewing an academic paper is often called refereeing. -Contents -[hide] - - A role of peer reviewing - - - A location having coordinates in geographic space. - - - - Removed the word "stable" because disputed territories from geopolitical.owl are included. This could imply that the geographic coordinates could change. This definition was originally in core:Geographic Location. I simply copied the definition from there. I think core:Geographic Location and core:Geographic Region are both the same and only one is needed. There is also geopolitical.owl:geographical_region which further causes confusion. - Use subclasses of core:Geographic Region subclasses instead of this class if possible. - - - - - - An area of land distinguished by its political autonomy. Politically independent territories. - Source of the Short Definition: http://www.thefreedictionary.com/country. This is also the same as geopolitical.owl:self_governing. - Afghanistan; Antigua and Barbuda; Cameroon; Iceland; Jamaica; Nigeria; United States of America - - - - - - - - Alachua County Extension Office - - A unit devoted primarily to extension activities, whether for outreach or research. - - - For individual, separate conferences, use conference instead. core:ConferenceSeries and core:SeminarSeries are very similar. - An organized series of a meeting for consultation or discussion. - - - - - - - Text of a speech written in preparation for delivery of the speech. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - A negotiated arrangement between two or more parties regarding a course of action - - - - A person registered in an undergraduate program leading to a bachelor's degree or an undergraduate diploma or certificate. - - - A government agency is a permanent or semi-permanent organization in the machinery of government that is responsible for the oversight and administration of specific functions. - Definition take from: http://en.wikipedia.org/wiki/Government_agency. - - United States Library of Congress - - - Definition was take from here: http://dictionary.reference.com/browse/museum - A building or place where works of art, scientific specimens, or other objects of permanent value are kept and displayed. - The Getty Museum - - - - Those positions are held by people who do academic work but do not have faculty positions in universities or institutes. - - - - - - - - - - - - - - - - - - - - - - Researcher; Academic Extension Associate; Postdoctoral Associate - A position involving academic work but without faculty status - - - - National Institute of Health (NIH) - - - - - - - - - - - A defined class of organizations that fund Grants. - - - - Written script for a film production, including dialogue and descriptions of gestures, actions, shooting directions - - - Licenses are usually issued in order to regulate some activity that is deemed to be dangerous or a threat to the person or the public or which involves a high level of specialized skill. See also core:Licensure. - Official or legal permission to do something - - - - - - A laboratory that provides services - Ideally a defined class -- a Laboratory the provides some Service via the property - - - - - - - - - - - - - - Elsevier; Harper & Row; Indiana University Press - - A person or company whose business is the publishing of books, periodicals, engravings, computer software, etc. - Definition found here: http://dictionary.reference.com/browse/publisher - - - Use subclasses of core:Facility subclasses instead of this class if possible - Something designed, built, installed, etc., to serve a specific function or activity affording a convenience or service. - - - - Distinct from the organization that runs it; e.g., a laboratory may be an organization but may be run by another organization and only consist of facilities housing equipment or services. Can be a building or place that provides a particular service or is used for a particular activity. Use the specific Building or Room whenever possible. Short definition from http://dictionary.reference.com/browse/facility. - - - The example is one outreach role required by US space agency NASA, which is related with one project in NASA. Name of the outreach role should be put here. - Communicating Astronomy to the Public - An outreach or community service role directed outside a person's primary profession and institution - - - - - - - - - Are we assuming that a PresenterRole is in a Presentation? Or could you have a PresenterRole in, say, a committee? - - - - - - - - - A role of presenting information - - - - - - A position designated as primary by the organization where it is held. - A position designated as primary by the organization or group where it is held. This designation may be applied to zero or more of an agent's positions and may be asserted in conjunction with other subclasses of position. - - - - A gathering of people for a defined purpose, not necessarily public or announced - - - - An article of opinion, typically published in a newspaper. For academics, most commonly Op Ed pieces - - - The most general classification of an information resource - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - The Ford Foundation - - An institution financed by a donation or legacy to aid research, education, the arts, etc. - Definition take from: http://dictionary.reference.com/browse/foundation. - - - Regularly updated online journal or newsletter by one or more writers, called bloggers, containing articles and commentary of interest to the blogger - - Blog is short for weblog. - Library of Congress Blog - - - - Definition take from here: http://en.wikipedia.org/wiki/Student_society - A student organization is an organization, operated by students at a university, whose membership normally consists only of students. - Dancin' Gators - - - An Award or Honor - An Award or Honor - - - - - - - - - Wiley Prize in Biomedical Sciences - - - - - - - - - - - - - - - - - - - - - A regularly offered service in support of an academic, research, or administrative function (not personal or professional service by an individual) - UITS service - - - - - - - - - - - UITS service is the information technology services provided by Indiana University. SC. - - - - - - A role of organizing - - - - - - Either city or town - a thickly populated area having fixed boundaries and certain local powers of government. - - - Any region that goes beyond national boundaries and does not fit into any subclass of core:TransnationalRegion. - Not sure how to access the "Editor's Comments". But as North America is a continent, it would be placed directly into the continent subclass and viewable through this class along with any other subclass entities. - sub-Saharan Africa, North America - None as yet. - - - - - - 1 - - - - - - - - - - - - - - http://info.slis.indiana.edu/~katy/ - Uniform Resource Locator (URL) specifies where an identified resource is available and the mechanism for retrieving it. - The full URL. - - - The grounds of a school, college, university, or hospital. Or, a large, usually suburban, landscaped business or industrial site. - Definition taken from dictionary.com (http://dictionary.reference.com/browse/campus). - - - - Cornell Ithaca; Cornell Geneva; Cornell New York City; Cornell Qatar - - - An academic administrative position (associate dean, etc.) as distinct from a professional administrative position (non-academic) - Associate Dean - - - - - - - - - - - - - - - - - - - That is a position held by an academic faculty member who works for administration. - - - - - - - The showing of an object or a collection of objects, in an organized manner. - - - A physical object provided for specific purpose, task or occupation. - - - - - - - - - A network server is one example. Medical schools and research laboratories can list professional equipment, such as microscopes. - server; Bruker Vector-33 FT-IR - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Only use if no specific subclasses of core:EventSeries desribe the activity. - Two or more events that occur at different times and are connected to each other. - A generic class which may include a conference series, a course section, a seminar series, or a workshop series. When possible, use one of these more specific classes. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Martha Van Rensselaer Hall (VR); Caldwell Hall (CD); University Auditorium - Building that provides a particular service or is used for a particular activity. - Enter building name. If the building's name is a number (as in many governmental organizations such as national laboratories and military bases), then enter it. Do not confuse with the number that appears in a postal address. - - - The largest administrative division of most states or provinces. - Alachua; Baker; Bradford; Kenora; Ottawa; Waterloo - Short Definition modified from the one found here: http://www.thefreedictionary.com/county. - - - - - - - - - - - - - - - - - - - - - - - - - - - - An employment activity, whether compensated or not. Short definition comes from http://en.wikipedia.org/wiki/Position, and has been modified. - Particular position in an organization, commonly identified by job title, and normally associated with a job description that details the tasks and responsibilities that go with the position. - Director of Admissions and Placement; Associate University Librarian - - - - - - - - - - - - - - An advisory relationship in which a professor advises an undergraduate student. - - - - - - A document confirming certain characteristics of a person or organization, usually provided by some form of external review, education, or assessment. - A document confirming certain characteristics of a person or organization, usually provided by some form of external review, education, or assessment. - - - Endodontics (department within a College of Dentistry); English (department within a College of Liberal Arts) - - - - - - - - - - - - - - - - - - - - A distinct, usually specialized educational unit within an educational organization. - - - - - - An advisory relationship in which the advisee is a Postdoc or Fellow. - - - - A person holding a position that is not considered to be an academic appointment. - - - - Encompasses talk, speech, lecture, slide lecture, conference presentation - - - - An organizational unit (as opposed to the physical facility) that performs research, provides services, or processes materials - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - A person not considered a faculty member but holding an academic appointment. - - - Short definition was partially taken from http://en.wikipedia.org/wiki/Subnational_entity. - For example, the Midwest, northeast U.S. - Smaller administrative division into which a country may be divided. - Boroughs; townships; districts; the Midwest - - - - Use subclasses of core:Geographic Location subclasses instead of this class if possible. - Removed the word "stable" because disputed territories from geopolitical.owl are included. This could imply that the geographic coordinates could change. I've also copied this definition to core:Geographic Location. I think core:Geographic Location and core:Geographic Region are both the same and only one is needed. There is also geopolitical.owl:geographical_region which further causes confusion. - - A location having coordinates in geographic space. - - - - Written musical composition for voice or instruments or both - - - Financial assistance mechanism providing money, property, or both to an eligible entity to carry out an approved project or activity - - - - - - - - - - - - - - - - - - - - - - - Short definition is from the Glossary of NIH Terms. - An intramural or extramural award to support scholarly work, such as UF09179 (VIVO) - - - - - - - - - - - - Marston Science Library - - A collection of any materials, for study and enjoyment, which has been systematically arranged. - Used information from this definition: http://dictionary.reference.com/browse/library. - - - - - - - - - - - Institute for Fundamental Theory - - An Institute normally has a research focus but may also fulfill instructional or outreach roles. - - - An endeavor, frequently collaborative, that occurs over a finite period of time and is intended to achieve a particular aim. - - - - - - - - - - An endeavor, frequently collaborative, that occurs over a finite period of time and is intended to achieve a particular aim. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - A role of serving as an educator - - - - - - - - - - - - - - - - - - - - - - - - - - - An attestation of qualification, competence, or authority issued to an individual by a third party with a relevant or de facto authority or assumed competence to do so. - An attestation of qualification, competence, or authority issued to an individual by a third party with a relevant or de facto authority or assumed competence to do so. - - - - - - Postdoctoral research is academic or scholarly research conducted by a person who has completed his or her doctoral studies, normally within the following five years. It is intended to further deepen expertise in a specialist subject. - - - - - - A role of conducting funded or unfunded research, sometimes linked to an Agreement. - Examples of research can be seen at: http://www.ufl.edu/research/products/index.html. Note these may have been funded, but the research doesn't have to be funded. Also, the research may be linked to an Agreement (for example, a Grant), but does not need to be. - - - - Definition from here: http://research.carleton.ca/htr/defs.php. - A person with at least one academic appointment to a specific faculty of a university or institution of higher learning. - - - - A Person holding an academic employment appointment focused on research rather than teaching; temporary (or for some defined term) - - - US Patent Data; US Job Data - - A named collection of data, usually containing only one type of data - - - - - - - - - - - - - - - - - - - Currently any abstract name is given to individuals of this class. This could change in the future. - This connects person to their academic degree through this educational training, but can also be used when the training does not result in a degree. - Represents educational training that has been received. - - - Not the same as an award or distinction. - Intel Talent Search; poetry contest - An occasion on which a winner is selected from among two or more contestants. - - - - - A paper presented at a conference; optionally collected into a Proceedings or a special Journal issue - - - - - - - - - - - - - - - - Computer program and its related documentation; directs the operation of a computer - - - - - - - - - - The digital file (or physical equivalent), if available after the conference, vs. the act of attending/presenting: use ConferencePresentation for information about date/time/location/name of the event where the poster was presented - - - - An agreement involving specific deliverables and payment - - - - - - - - - - - - - - - - - - - An offering through an ongoing program or single request of research support: internships, positions, financial awards or other forms of tangible or intangible support - - - - - - - - - - - - - - - - - - A retired faculty member who has retained their rank, title and privileges. - - - Special Libraries Association; Association for Computing Machinery(ACM); American Medical Informatics Association(AMIA) - - A formal organization of people or organizations around a subject or practice. - - - - Residency is a stage of graduate medical training. - - - - An organized series of workshop events, whether repetitions of the same workshop or multiple different workshops. - Use workshop for individual events. - - - - Audiovisual recording in video format - - - A date and/or time - - - functions as an n-ary predicate - a reified relationship - - - - A postdoctoral training appointment (job) - - - Cardiovascular Medicine (division within medicine) - - - - - - - - - - Definition modified from http://www.thefreedictionary.com/division. It is difficult to tell the difference between a division and a department. - An area of corporate activity organized as an administrative or functional unit. - - - The Ornithological Newsletter - - Usually issued periodically, prepared by or for a group or institution to present information to a specific audience, often also made available to the press and public - - - - A proposal for a research grant that has been submitted but not approved; does not represent an existing activity - - - An role of an individual within his or her profession or institution; use outreach provider role for community service or other activities outside the profession. - - - - Member of the International Conference on Complex Systems Organizing Committee - - - - An explicit individual period considered by an academic institution to be its primary academic cycle. - - - - - - A role of being a member in a Process or an Organization - - - An informal organization brought together for the purposes of a project or event. - - VIVO Outreach Team; VIVO Ontology Team - - - - - - - - - - - A course as taught in one time period (such as a semester; although note that a course could consist of only one meeting (teaching session)) by one or more instructors, normally but not always for credit. Does not represent either each meeting of the course or the course offering such as Biology 101 taught every semester from 1980 to 2010 - A course as taught in one time period by one or more instructors, normally but not always for credit. Does not represent either each meeting of the course or the course offering such as Biology 101 taught every semester from 1980 to 2010 - - - - - - - - - - - - - In the future we may be able to make this a defined class that would not need to be directly asserted, but the consensus seems to be that some organizations "are" clinical and some "are" research organizations and that the distinction is important enough to warrant the additional class and class assertions - Any organization with a significant clinical function as a matter of course and not just through occasional clinical roles - - - An ongoing academic initiative not formalized with department or division status. - A Cornell graduate field (http://vivo.cornell.edu/index.jsp?home=65535&collection=820) - - - - An institution that provides medical, surgical, or psychiatric care and treatment for the sick or the injured. - - Definition take from: http://dictionary.reference.com/browse/hospital. - Shands at the University of Florida - - - Short Definition take from http://www.thefreedictionary.com/center. - A place where a particular activity or service is concentrated. - - Alchohol Education Center; Center for Arts and Public Policy; Hearing Research Center - - - - - - - - - - - Address has properties for department name, street, city, state or province, postal code, and country. For US specific address, classify using core:US Postal Code. core:Address will display all addresses. - - - - - - - - - A specification of a location. To classify US specific addresses, use core:US Postal Code. - 200 University Avenue West, Waterloo, Ontario, Canada N2L 3G1 - - - Librarian; Library Systems Analyst; Music Bibliographer - - - - - - - - - - - - - - - - - - - A position held by library and information science professionals, or academic or technical experts, in support of providing information services or materials - - It is the common position in libraries. - - - Indicates the precision of the value of a DateTimeValue instance. - - - - - - An advisory relationship in which a professor advises a graduate student. - - - - Typically a student or a recent graduate undergoing supervised practical training. - - - - A person working in a position of librarian or information professional, or academic or technical expert in support of providing information services or materials. - - - - A person who has already received a bachelor's degree and is working toward a Master's or Doctoral degree. - - - - - - A role of attending an Event or EventSeries - - - - - - The bestowal of an award, honor, or distinction to a person or person's at a particular time. - - - - - - - - - The award bestowed may be represented with the Award class. - - - - - - - - - - - - - - - - - - - - - - - - - - - - An advisory relationship in which one faculty member mentors another faculty member. - - - An ongoing editorial responsibility for a bibo:Collection, such as a Journal or Series - - - - An ongoing editorial responsibility for a bibo:Collection, such as a Journal or Series - - - - - - - - - - - - - - - - - Only use this broad role class if no subclasses of role describe the item being classified. - - - - - - - - - A person's, group's or organization's role in an endeavor - Only use if no specific subclasses of core:Role describe the role. - - - - A short written piece focused on an event or announcement of note, having a defined publication time and of less enduring interest than a news feature. - - - - Role of co-principal investigator of an Agreement (for example, a grant), who devotes a specified percentage of time and is considered key personnel. - - - Currently any abstract name is given to members of this class. This could change in the future. - - - - - - - - - Contains the authors name, their rank in the publication, and whether or not they are a corresponding author on the publication. - Authorship of journal articles, books and other original works is a means by which academics communicate the results of their scholarly work, establish priority for their discoveries, and build their reputation among their peers. -This class allows for linking an author to a publication while indicating information about that author's authorship. - - - - - - - - - - - - - - - - - - - - - - Academic position in a university or institution - Professor, associate professor and assistant professor are common positions for academic faculty. - Professor; Associate Professor; Assistant Professor - - - - - - - - - - - - Any organization (likely also asserted as another class of Organization) with a primary, ongoing research function, not just through occasional roles - - - - - - - - - - - A dual relationship of one person being advised or mentored by another person, typically including start and end dates - - - - - - - - - - - - - - - - - - - - - PubMed - A structured file of information or a set of logically related data stored and retrieved using computer-based means - Short Definition is the Medical Subject Heading (MeSH) definition - - - - The result of rendering a work from one language to another - - - Short definition obtained here: http://en.wiktionary.org/wiki/geopolitical_entity. - - Use subclasses of core:GeopoliticalEntity subclasses instead of this class if possible. - A geographical area which is associated with some sort of political structure. - - - Short Definition is the Medical Subject Heading (MeSH) definition - NLM Catalog - - - - - - - - - - - - - - - - - - A list of items in a collection; an ordered compilation of item descriptions and sufficient information to afford access to them - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - general relationship of support - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Examples shows a book has French language version. Public description source: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - This is done through a restriction on the foaf:Person class. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - This is done through a restriction on the foaf:Person class. - - - - - - - - - - - - - - - - - - - - - - This is done through a restriction on academic degree to allow the values from to be foaf:organization to be used as the range. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - This is done through a restriction on academic degree to allow the values from to be foaf:organization to be used as the range. - - - - - - - - - general relationship of support - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Currently being used by a restriction on organization. - - - - - - - - - - - - - - - - - - Note that the administering department is not the central research administration office (such as University of Florida DSP or Cornell OSP) -- we didn't see a need to record a relationship to that office because it implicitly manages all grants. Also note that this is the administering organization for the grant at the awardee side. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - This is done with a restriction on agent. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - For example, National Science Foundation providesFundingThrough Graduate Research Fellowship Program; National Institutes of Health providesFundingThrough National Center for Research Resources. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - an information resource (typically a publication) supported by (typically via funding) an agreement (such as a grant) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Since we have defined geopolitical.owl.hasMember to be a subproperty of core:hasMember, we should not make changes to this property that would change the definition of geopolitical.owl.hasMember in ways that may make it inconsistent with its usage in other ontologies. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - This is done with a restriction on agent. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - For example, National Science Foundation providesFundingThrough Graduate Research Fellowship Program; National Institutes of Health providesFundingThrough National Center for Research Resources. - - - - - - - - - Public Definition source (http://www.answers.com/topic/publisher). - - - - - - - - - - - - - - Public Definition source (http://www.answers.com/topic/publisher). - - - - - - - - - - We would like the domain of core:outcome to be the union of Event and Process; and that same union to be the range for core:outcomeOf, but we cannot currently express this with the editor. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - an information resource (typically a publication) supported by (typically via funding) an agreement (such as a grant) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Public Description for bibo:distributor taken from here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - We would like the domain of core:outcome to be the union of Event and Process; and that same union to be the range for core:outcomeOf, but we cannot currently express this with the editor. - - - - - - - - - - - - - - - - Note that the administering department is not the central research administration office (such as University of Florida DSP or Cornell OSP) -- we didn't see a need to record a relationship to that office because it implicitly manages all grants. Also note that this is the administering organization for the grant at the awardee side. - - - - - - - - - The bibo:reviewOf public description was found here: http://bibotools.googlecode.com/svn/bibo-ontology/trunk/doc/index.html . As of 26 May 2010, bibo:reviewOf is used with the class Review, but core:reviewIn doesn't seem to be being used. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - A possible working example: The conference proceeding of the SPIE was generated from the conference - International Society for Optical Engineering. - - - - - - - - - - - - - - - - A possible working example: The conference proceeding of the SPIE was generated from the conference - International Society for Optical Engineering. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Currently being used by a restriction on organization. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Since we have defined geopolitical.owl.hasMember to be a subproperty of core:hasMember, we should not make changes to this property that would change the definition of geopolitical.owl.hasMember in ways that may make it inconsistent with its usage in other ontologies. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - RearcherID is a Thomson Reuters project where researchers have a place to manage and share their professional information. It will allow them to solve author identity issues while simultaneously adding dynamic citation metrics and collaboration networks to your personal profile. -Definition source: http://isiwebofknowledge.com/researcherid/ - - - - - - - A PMCID is a unique PubMed Central reference number, which is assigned to each full-text record made available A PMCID is a unique PubMed Central reference number, which is assigned to each full-text record made available in PubMed Central. The PMCID is issued shortly after the PI or author approves the PubMed Central formatted web version of the submission. - - - - - - - core:localAwardId has a domain of core:Grant, and should be public since that's its public identifier for local use by OSP, accounting, department admins, and the PI - - - - - - - - Chicago; New York; Bloomington; Gainesville - - - - - - - - - - - - - - - conservation - -use one freetextKeyword assertion for each keyword or phrase. - one keyword or phrase per freetextKeyword assertion - - - - True; False - - - - - - The International classification(s) to which the published application has been assigned. - - - - - - 47405-3907 - - - - Apt N26; Mann Library - - - - Information Science; Computer Science; Anthropology - - - - - - - - - - - - - - - - - - - - - We can't yet assume that we will only have a single ORCID id for a person. -source: http://en.wikipedia.org/wiki/ORCID . - - -We wanted this property to be visible so that people would be aware that we intend to carry ORCID ids in VIVO for cross-reference. I don't believe any ORCID ids have been minted yet, but it's hard to imagine they would need to be private since the goal of having them is to disambiguate author references internationally. However, this and the researcherId and scopusId (also with domain foaf:Person) can stay as visible to self-editors for now as they will probably be used mostly in data ingest. It might be nice in the future to let people make their own decision about whether these are visible. - - - - Used for a single narrative summary of research, typically covering a wide range of activities and time periods; use Researcher Role for information on individual activities - - - - - - - Afghanistan; Antigua and Barbuda; Cameroon; Iceland; Jamaica; Nigeria; United States of America - - - - - - - - - - - - - - - - - Not intended to be an institution name. - - - - - - - - - - - - - - - - - - - - - - - - - - - 123 Main Street; ITS department; P.O. Box 783 - - - - B.A. - - A short form for an longer title or name. - - - - this number indicates a position in a list - - - - - Used for a single narrative summary of teaching, typically covering a wide range of courses including for credit and non-credit teaching over multiple semesters; the "teaches" property links a person directly with an instance of a Semester Class, typically from an institutional database of record; then use Teacher Role for information about a person's role in non-credit teaching or their specific contribution to individual courses - - - Definition http://en.wikipedia.org/wiki/Job_title#Job_title. - - administrative secretary - - - - source of definition: http://www.uspto.gov/main/glossary/#p . The following site has patent number formats: http://www.uspto.gov/patents/ebc/kindcodesum.jsp . - - - - - - - Home page for Scopus: http://www.scopus.com/home.url - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 55 - - definition modified from: source (http://en.wikipedia.org/wiki/Seating_capacity). - - - - - - Physical Sciences Librarian - - For example an HR job title for a person might be - Assistant University Librarian, and the preferred job title for that same person could be - Physical Sciences Librarian. - - - - - - - - - Has a domain of Grant. There is not a strong reason have this be publically visible, since most users would care more about the name of the sponsoring agency than its identifier, but it does no harm to be public. - - -See also core:localAwardId. - - - - Indiana; Florida; Minnesota; Michigan; New York; Quebec; Manitoba; Ontario - - - - - - - - - - - - - - - - - - - - - - Used for a single narrative summary of outreach, typically covering a wide range of activities and time periods; use Outreach Provider Role for information on individual activities - - - My extension program consists of developing and reporting disease management strategies that are both economically and environmentally sound for fresh market vegetable production. We hope that some of this testing will result in practices adaptable for organic production. - - - - - - - - - - - - - - - - http://purl.org/ontology/bibo/ - - http://purl.org/ontology/bibo/1.2/ - bibo - - - diff --git a/productMods/WEB-INF/filegraph/tbox/vivo-core-public-1.5.owl b/productMods/WEB-INF/filegraph/tbox/vivo-core-public-1.5.owl new file mode 100644 index 00000000..303b1026 --- /dev/null +++ b/productMods/WEB-INF/filegraph/tbox/vivo-core-public-1.5.owl @@ -0,0 +1,2155 @@ + + + + VIVO core + + + + + + + + most specific type + + + + + + + + + + + + + + + + + + + part of + + + + + + + + + has part + + + + + + + + + + + + + + + date filed + + + + + + + + + + + date issued + + + + + + + + + + date/time interval + + + + + + + + + date/time precision + + + + + + + + + date/time value + + + + + + + + + end + + + + + + + + + + + expiration date + + + + + + + + + features + This is done through a restriction on the foaf:Person class. + + + + + + + + geographic focus + + + + + + + + + geographic focus of + + + + + + + + + + + + + + + + subcontracted through + + + + + + + + + + associated concept + + + + + + + + has geographic location + Currently being used by a restriction on organization. + + + + + + + + + + has prerequisite + + + + + + + + + + published in + + + + + + + + successor organization + + + + + + + + + + offered by + + + + + + + + + offers + + + + + + + + prerequisite for + + + + + + + + + + + provides funding through + For example, National Science Foundation providesFundingThrough Graduate Research Fellowship Program; National Institutes of Health providesFundingThrough National Center for Research Resources. + + + + + + + + + + publication venue for + + + + + + + + + publisher + Public Definition source (http://www.answers.com/topic/publisher). + + + + + + + + + publisher of + Public Definition source (http://www.answers.com/topic/publisher). + + + + + + + + + + start + + + + + + + + + + + subcontracts grant + + + + + + + + + + + + + + + + + + + + + + + + + + + + + abbreviation + A short form for an longer title or name. + B.A. + + + + + + + + Published US Classification Class/Subclass (CCL) code + + + + + + + + + + credits + + + + + + + + date/time + + + + + + + + + + description + + + + + + + + eRA Commons id + + + + + + + + + + keywords + conservation + +use one freetextKeyword assertion for each keyword or phrase. + one keyword or phrase per freetextKeyword assertion + + + + + + + + + + direct costs + + + + + + + + International Classification (ICL) code + The International classification(s) to which the published application has been assigned. + + + + + + + + + + identifier + + + + + + + + license number + + + + + + + + + + link URI + + + + + + + + + local award id + core:localAwardId has a domain of core:Grant, and should be public since that's its public identifier for local use by OSP, accounting, department admins, and the PI + + + + + + + + + + major field of degree + Information Science; Computer Science; Anthropology + + + + + + + + NIH Manuscript Submission System ID + + + + + + + + + + ORCID id + We can't yet assume that we will only have a single ORCID id for a person. +source: http://en.wikipedia.org/wiki/ORCID . + + +We wanted this property to be visible so that people would be aware that we intend to carry ORCID ids in VIVO for cross-reference. I don't believe any ORCID ids have been minted yet, but it's hard to imagine they would need to be private since the goal of having them is to disambiguate author references internationally. However, this and the researcherId and scopusId (also with domain foaf:Person) can stay as visible to self-editors for now as they will probably be used mostly in data ingest. It might be nice in the future to let people make their own decision about whether these are visible. + + + + + + + + + + + outreach overview + My extension program consists of developing and reporting disease management strategies that are both economically and environmentally sound for fresh market vegetable production. We hope that some of this testing will result in practices adaptable for organic production. + Used for a single narrative summary of outreach, typically covering a wide range of activities and time periods; use Outreach Provider Role for information on individual activities + + + + + + + + + + overview + + + + + + + + + + patent number + source of definition: http://www.uspto.gov/main/glossary/#p . The following site has patent number formats: http://www.uspto.gov/patents/ebc/kindcodesum.jsp . + + + + + + + + + + + place of publication + + + + + + + + PubMed Central ID + A PMCID is a unique PubMed Central reference number, which is assigned to each full-text record made available A PMCID is a unique PubMed Central reference number, which is assigned to each full-text record made available in PubMed Central. The PMCID is issued shortly after the PI or author approves the PubMed Central formatted web version of the submission. + + + + + + + + + + rank + this number indicates a position in a list + + + + + + + + + + report identifier + + + + + + + + + + + research overview + Used for a single narrative summary of research, typically covering a wide range of activities and time periods; use Researcher Role for information on individual activities + + + + + + + + + ISI researcher id + RearcherID is a Thomson Reuters project where researchers have a place to manage and share their professional information. It will allow them to solve author identity issues while simultaneously adding dynamic citation metrics and collaboration networks to your personal profile. +Definition source: http://isiwebofknowledge.com/researcherid/ + + + + + + + + + + Scopus id + Home page for Scopus: http://www.scopus.com/home.url + + + + + + + + + + + seating capacity + 55 + definition modified from: source (http://en.wikipedia.org/wiki/Seating_capacity). + + + + + + + + + + + sponsor award id + Has a domain of Grant. There is not a strong reason have this be publically visible, since most users would care more about the name of the sponsoring agency than its identifier, but it does no harm to be public. + + +See also core:localAwardId. + + + + + + + + + + + supplemental information + + + + + + + + + teaching overview + Used for a single narrative summary of teaching, typically covering a wide range of courses including for credit and non-credit teaching over multiple semesters; the "teaches" property links a person directly with an instance of a Semester Class, typically from an institutional database of record; then use Teacher Role for information about a person's role in non-credit teaching or their specific contribution to individual courses + + + + + + + + + + total award amount + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Service Provider Role + + An role of an individual within his or her profession or institution; use outreach provider role for community service or other activities outside the profession. + Member of the International Conference on Complex Systems Organizing Committee + + + + + + + + Research Opportunity + An offering through an ongoing program or single request of research support: internships, positions, financial awards or other forms of tangible or intangible support + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Academic Department + + A distinct, usually specialized educational unit within an educational organization. + Endodontics (department within a College of Dentistry); English (department within a College of Liberal Arts) + + + + + + + + Academic Term + + An explicit individual academic term, quarter, or semester rather than the generic fall, spring or summer semester. + + + + + + + + Academic Year + + An explicit individual period considered by an academic institution to be its primary academic cycle. + + + + + + + + Advising Relationship + + A dual relationship of one person being advised or mentored by another person, typically including start and end dates + + + + + + + + Association + + A formal organization of people or organizations around a subject or practice. + Special Libraries Association; Association for Computing Machinery(ACM); American Medical Informatics Association(AMIA) + + + + + + + + Attendee Role + A role of attending an Event or EventSeries + + + + + + + + Authorship + + + Authorship of journal articles, books and other original works is a means by which academics communicate the results of their scholarly work, establish priority for their discoveries, and build their reputation among their peers. +This class allows for linking an author to a publication while indicating information about that author's authorship. + Contains the authors name, their rank in the publication, and whether or not they are a corresponding author on the publication. + Currently any abstract name is given to members of this class. This could change in the future. + + + + + + + + Award or Honor Receipt + The award bestowed may be represented with the Award class. + The bestowal of an award, honor, or distinction to a person or person's at a particular time. + + + + + + + + Blog + + Blog is short for weblog. + Library of Congress Blog + Regularly updated online journal or newsletter by one or more writers, called bloggers, containing articles and commentary of interest to the blogger + + + + + + + + Blog Posting + + A specific blog posting + An online article or commentary appearing on a blog + + + + + + + + Building + + Building that provides a particular service or is used for a particular activity. + Enter building name. If the building's name is a number (as in many governmental organizations such as national laboratories and military bases), then enter it. Do not confuse with the number that appears in a postal address. + Martha Van Rensselaer Hall (VR); Caldwell Hall (CD); University Auditorium + + + + + + + + Campus + Cornell Ithaca; Cornell Geneva; Cornell New York City; Cornell Qatar + Definition taken from dictionary.com (http://dictionary.reference.com/browse/campus). + The grounds of a school, college, university, or hospital. Or, a large, usually suburban, landscaped business or industrial site. + + + + + + + + Case Study + + A form of qualitative descriptive research that is used to study individuals, a small group of participants, or a group as a whole. Medical usage (from MeSH): clinical presentations that may be followed by evaluative studies that eventually lead to a diagnosis. + A qualitative descriptive research study of individuals or a group + + + + + + + + Catalog + + A list of items in a collection; an ordered compilation of item descriptions and sufficient information to afford access to them + NLM Catalog + Short Definition is the Medical Subject Heading (MeSH) definition + + + + + + + + Center + + A place where a particular activity or service is concentrated. + Alchohol Education Center; Center for Arts and Public Policy; Hearing Research Center + Short Definition take from http://www.thefreedictionary.com/center. + + + + + + + + Certification + + An issued certificate + see also core:Certificate + + + + + + + + Clinical Organization + + Any organization with a significant clinical function as a matter of course and not just through occasional clinical roles + In the future we may be able to make this a defined class that would not need to be directly asserted, but the consensus seems to be that some organizations "are" clinical and some "are" research organizations and that the distinction is important enough to warrant the additional class and class assertions + + + + + + + + Clinical Role + + A role of observing or treating patients + + + + + + + + Co-Principal Investigator Role + + Role of co-principal investigator of an Agreement (for example, a grant), who devotes a specified percentage of time and is considered key personnel. + + + + + + + + College + + A primary academic unit within a University or a free-standing higher education organization without graduate degree programs. + College of Arts & Sciences; Ivy Tech Community College + + + + + + + + Committee + + A group of people organized for a specific purpose (e.g., a reporting or advisory role), often with a charge and for a specific duration. + Curriculum Steering Committee; PhD Advisory Committee + There could be many subclasses such as thesis committee or tenure committee, but these may typically be differentiated via the moniker unless distinct properties become important. + + + + + + + + Company + + a legally-recognized business organization + from Wikipedia: "A company is a form of business organization. It is an association or collection of individual real persons and/or other companies ... This collection, group or association of persons can be made to exist in law and then a company is itself considered a "legal person". The name company arose because, at least originally, it represented or was owned by more than one real or legal person." + + + + + + + + Competition + + An occasion on which a winner is selected from among two or more contestants. + Intel Talent Search; poetry contest + Not the same as an award or distinction. + + + + + + + + Conference Paper + + A paper presented at a conference; optionally collected into a Proceedings or a special Journal issue + + + + + + + + Conference Poster + + The digital file (or physical equivalent), if available after the conference, vs. the act of attending/presenting: use ConferencePresentation for information about date/time/location/name of the event where the poster was presented + + + + + + + + Conference Series + + An organized series of a meeting for consultation or discussion. + For individual, separate conferences, use conference instead. core:ConferenceSeries and core:SeminarSeries are very similar. + + + + + + + + Consortium + + Committee on Institutional Cooperation (CIC); The Five Colleges of Ohio + Independent organizations formally working together toward a common goal, under an expressed agreement + + + + + + + + Continent + + A large contiguous landmass that is at least partially surrounded by water, together with any islands on its continental shelf. + Short Definition take from http://en.wiktionary.org/wiki/continent. + The seven commonly recognized continents are Africa; Antarctica; Asia; Australia; Europe; North America; South America + + + + + + + + Contract + An agreement involving specific deliverables and payment + + + + + + + + Core Laboratory + + A lab providing services such as training, protocols, or access to instruments or software + + + + + + + + Country + + Afghanistan; Antigua and Barbuda; Cameroon; Iceland; Jamaica; Nigeria; United States of America + An area of land distinguished by its political autonomy. Politically independent territories. + Source of the Short Definition: http://www.thefreedictionary.com/country. This is also the same as geopolitical.owl:self_governing. + + + + + + + + County + + Alachua; Baker; Bradford; Kenora; Ottawa; Waterloo + Short Definition modified from the one found here: http://www.thefreedictionary.com/county. + The largest administrative division of most states or provinces. + + + + + + + + Course + + A course as taught in one time period (such as a semester; although note that a course could consist of only one meeting (teaching session)) by one or more instructors, normally but not always for credit. Does not represent either each meeting of the course or the course offering such as Biology 101 taught every semester from 1980 to 2010 + A course as taught in one time period by one or more instructors, normally but not always for credit. Does not represent either each meeting of the course or the course offering such as Biology 101 taught every semester from 1980 to 2010 + + + + + + + + Database + + A structured file of information or a set of logically related data stored and retrieved using computer-based means + PubMed + Short Definition is the Medical Subject Heading (MeSH) definition + + + + + + + + Dataset + A named collection of data, usually containing only one type of data + US Patent Data; US Job Data + + + + + + + + Date/Time Interval + a specific period or duration, defined by (optional) start and end date/times. + + + + + + + + Date/Time Value + A date and/or time + + + + + + + + Department + + A distinct, usually ongoing and specialized unit within a large organization. + Definition modified from the definition here: http://dictionary.reference.com/browse/department. It is difficult to tell the difference between and department and a division. + Legal (department within a company); Use for any non-academic department + + + + + + + + Division + + An area of corporate activity organized as an administrative or functional unit. + Cardiovascular Medicine (division within medicine) + Definition modified from http://www.thefreedictionary.com/division. It is difficult to tell the difference between a division and a department. + + + + + + + + Editor Role + + An ongoing editorial responsibility for a bibo:Collection, such as a Journal or Series + An ongoing editorial responsibility for a bibo:Collection, such as a Journal or Series + + + + + + + + Editorial Article + + An article of opinion, typically published in a newspaper. For academics, most commonly Op Ed pieces + + + + + + + + Equipment + A network server is one example. Medical schools and research laboratories can list professional equipment, such as microscopes. + A physical object provided for specific purpose, task or occupation. + server; Bruker Vector-33 FT-IR + + + + + + + + Event Series + A generic class which may include a conference series, a course section, a seminar series, or a workshop series. When possible, use one of these more specific classes. + Only use if no specific subclasses of core:EventSeries desribe the activity. + Two or more events that occur at different times and are connected to each other. + + + + + + + + Exhibit + + The showing of an object or a collection of objects, in an organized manner. + + + + + + + + Extension Unit + + A unit devoted primarily to extension activities, whether for outreach or research. + Alachua County Extension Office + + + + + + + + F1000 Link + + F1000, is a place where faculty go to critique papers published in PubMed. Any given record in F1000 might have anywhere from one to dozens of reviews. + + + + + + + + Facility + Distinct from the organization that runs it; e.g., a laboratory may be an organization but may be run by another organization and only consist of facilities housing equipment or services. Can be a building or place that provides a particular service or is used for a particular activity. Use the specific Building or Room whenever possible. Short definition from http://dictionary.reference.com/browse/facility. + Something designed, built, installed, etc., to serve a specific function or activity affording a convenience or service. + Use subclasses of core:Facility subclasses instead of this class if possible + + + + + + + + Faculty Administrative Position + + An academic administrative position (associate dean, etc.) as distinct from a professional administrative position (non-academic) + Associate Dean + That is a position held by an academic faculty member who works for administration. + + + + + + + + Faculty Mentoring Relationship + + An advisory relationship in which one faculty member mentors another faculty member. + + + + + + + + Faculty Position + + Academic position in a university or institution + Professor, associate professor and assistant professor are common positions for academic faculty. + Professor; Associate Professor; Assistant Professor + + + + + + + + Foundation + + An institution financed by a donation or legacy to aid research, education, the arts, etc. + Definition take from: http://dictionary.reference.com/browse/foundation. + The Ford Foundation + + + + + + + + Funding Organization + + A defined class of organizations that fund Grants. + National Institute of Health (NIH) + + + + + + + + Geographic Location + + A location having coordinates in geographic space. + Removed the word "stable" because disputed territories from geopolitical.owl are included. This could imply that the geographic coordinates could change. I've also copied this definition to core:Geographic Location. I think core:Geographic Location and core:Geographic Region are both the same and only one is needed. There is also geopolitical.owl:geographical_region which further causes confusion. + Use subclasses of core:Geographic Location subclasses instead of this class if possible. + + + + + + + + Geographic Region + A location having coordinates in geographic space. + Removed the word "stable" because disputed territories from geopolitical.owl are included. This could imply that the geographic coordinates could change. This definition was originally in core:Geographic Location. I simply copied the definition from there. I think core:Geographic Location and core:Geographic Region are both the same and only one is needed. There is also geopolitical.owl:geographical_region which further causes confusion. + Use subclasses of core:Geographic Region subclasses instead of this class if possible. + + + + + + + + Geopolitical Entity + + A geographical area which is associated with some sort of political structure. + Short definition obtained here: http://en.wiktionary.org/wiki/geopolitical_entity. + Use subclasses of core:GeopoliticalEntity subclasses instead of this class if possible. + + + + + + + + Government Agency + + A government agency is a permanent or semi-permanent organization in the machinery of government that is responsible for the oversight and administration of specific functions. + Definition take from: http://en.wikipedia.org/wiki/Government_agency. + United States Library of Congress + + + + + + + + Graduate Advising Relationship + + An advisory relationship in which a professor advises a graduate student. + + + + + + + + Graduate Student + + A person who has already received a bachelor's degree and is working toward a Master's or Doctoral degree. + + + + + + + + Grant + An intramural or extramural award to support scholarly work, such as UF09179 (VIVO) + Financial assistance mechanism providing money, property, or both to an eligible entity to carry out an approved project or activity + Short definition is from the Glossary of NIH Terms. + + + + + + + + Hospital + + An institution that provides medical, surgical, or psychiatric care and treatment for the sick or the injured. + Definition take from: http://dictionary.reference.com/browse/hospital. + Shands at the University of Florida + + + + + + + + Institute + + An Institute normally has a research focus but may also fulfill instructional or outreach roles. + Institute for Fundamental Theory + + + + + + + + Internship + Typically a student or a recent graduate undergoing supervised practical training. + + + + + + + + Investigator Role + + A role in an Agreement (for example, a grant) as a named investigator or key personnel. + + + + + + + + Invited Talk + + + + + + + + + Issued Credential + + + + + + + + Laboratory + + An organizational unit (as opposed to the physical facility) that performs research, provides services, or processes materials + + + + + + + + Leader Role + + A broad-ranging leader concept, from leading a small temporary committee to head of a large international organization. + A leadership role + + + + + + + + Librarian Position + + A position held by library and information science professionals, or academic or technical experts, in support of providing information services or materials + It is the common position in libraries. + Librarian; Library Systems Analyst; Music Bibliographer + + + + + + + + Library + + A collection of any materials, for study and enjoyment, which has been systematically arranged. + Marston Science Library + Used information from this definition: http://dictionary.reference.com/browse/library. + + + + + + + + Licensure + + A granted license, which gives a 'permission to practice.' + A granted license, which gives a 'permission to practice.' Such licenses are usually issued in order to regulate some activity that is deemed to be dangerous or a threat to the person or the public or which involves a high level of specialized skill. See also core:License. + + + + + + + + Location + It's anticipated that the subclasses will be used when classifying items. And, all locations can be viewable via this class. + Top level of all location classes. + Use subclasses of core:Location when classsifying items. + + + + + + + + Medical Residency + Residency is a stage of graduate medical training. + + + + + + + + Meeting + + A gathering of people for a defined purpose, not necessarily public or announced + + + + + + + + Member Role + + A role of being a member in a Process or an Organization + + + + + + + + Museum + + A building or place where works of art, scientific specimens, or other objects of permanent value are kept and displayed. + Definition was take from here: http://dictionary.reference.com/browse/museum + The Getty Museum + + + + + + + + News Release + + A short written piece focused on an event or announcement of note, having a defined publication time and of less enduring interest than a news feature. + + + + + + + + Newsletter + + The Ornithological Newsletter + Usually issued periodically, prepared by or for a group or institution to present information to a specific audience, often also made available to the press and public + + + + + + + + Non-Academic Position + + A position classified as professional, staff, support, or any other non-academic role + Accounting & Research Services Assistant; Director of Information Technology + Staff, support, and other non-academic positions. + + + + + + + + Non-Faculty Academic Position + + A position involving academic work but without faculty status + Researcher; Academic Extension Associate; Postdoctoral Associate + Those positions are held by people who do academic work but do not have faculty positions in universities or institutes. + + + + + + + + Organizer Role + + A role of organizing + + + + + + + + Outreach Provider Role + + An outreach or community service role directed outside a person's primary profession and institution + Communicating Astronomy to the Public + The example is one outreach role required by US space agency NASA, which is related with one project in NASA. Name of the outreach role should be put here. + + + + + + + + Peer Reviewer Role + + A role of peer reviewing + is a generic term for a process of self-regulation by a profession or a process of evaluation involving qualified individuals within the relevant field. Peer review methods are employed to maintain standards, improve performance and provide credibility. In academia the term is often used to denote a prepublication review of academic papers; reviewing an academic paper is often called refereeing. +Contents +[hide] + + + + + + + + Populated Place + + Either city or town - a thickly populated area having fixed boundaries and certain local powers of government. + + + + + + + + Position + An employment activity, whether compensated or not. Short definition comes from http://en.wikipedia.org/wiki/Position, and has been modified. + Director of Admissions and Placement; Associate University Librarian + Particular position in an organization, commonly identified by job title, and normally associated with a job description that details the tasks and responsibilities that go with the position. + + + + + + + + Postdoc or Fellow Advising Relationship + + An advisory relationship in which the advisee is a Postdoc or Fellow. + + + + + + + + Postdoctoral Position + + A postdoctoral training appointment (job) + + + + + + + + Postdoctoral Training + Postdoctoral research is academic or scholarly research conducted by a person who has completed his or her doctoral studies, normally within the following five years. It is intended to further deepen expertise in a specialist subject. + + + + + + + + Presentation + + Encompasses talk, speech, lecture, slide lecture, conference presentation + + + + + + + + Presenter Role + + A role of presenting information + Are we assuming that a PresenterRole is in a Presentation? Or could you have a PresenterRole in, say, a committee? + + + + + + + + Primary Position + + A position designated as primary by the organization or group where it is held. This designation may be applied to zero or more of an agent's positions and may be asserted in conjunction with other subclasses of position. + A position designated as primary by the organization where it is held. + + + + + + + + Principal Investigator Role + + Role of a person to direct a project or activity being supported by an Agreement (for example, a grant), and who is accountable to the grantee for the proper conduct of the project or activity. Also known as Program Director or Project Director. + + + + + + + + Private Company + + A private company is one that is privately-owned, and thus, is not publicly-traded in the stock market. Members of the general public cannot purchase stock in a private company unless that company chooses to go public and become a public company. + Definition obtained here: http://answers.ask.com/Business/Finance/what_is_a_private_company. Examples of private companies found here: http://www.forbes.com/2008/11/03/largest-private-companies-biz-privates08-cx_sr_1103private_land.html + Publix Super Markets; Ernst & Young; PricewaterhouseCoopers + + + + + + + + Program + + A Cornell graduate field (http://vivo.cornell.edu/index.jsp?home=65535&collection=820) + An ongoing academic initiative not formalized with department or division status. + + + + + + + + Project + An endeavor, frequently collaborative, that occurs over a finite period of time and is intended to achieve a particular aim. + An endeavor, frequently collaborative, that occurs over a finite period of time and is intended to achieve a particular aim. + + + + + + + + + Publisher + + A person or company whose business is the publishing of books, periodicals, engravings, computer software, etc. + Definition found here: http://dictionary.reference.com/browse/publisher + Elsevier; Harper & Row; Indiana University Press + + + + + + + + Relationship + a reified relationship + functions as an n-ary predicate + + + + + + + + Research Organization + + Any organization (likely also asserted as another class of Organization) with a primary, ongoing research function, not just through occasional roles + + + + + + + + Research Proposal + + A proposal for a research grant that has been submitted but not approved; does not represent an existing activity + + + + + + + + Researcher Role + + A role of conducting funded or unfunded research, sometimes linked to an Agreement. + Examples of research can be seen at: http://www.ufl.edu/research/products/index.html. Note these may have been funded, but the research doesn't have to be funded. Also, the research may be linked to an Agreement (for example, a Grant), but does not need to be. + + + + + + + + Review + + An article reviewing one or more other information resources (a book, one or more other articles, movies, etc) + + + + + + + + Reviewer Role + + A role that encompasses both ongoing reviewer responsibility for a bibo:Collection, such as a Journal or Series, and also a review performed for a bibo:Document, such as a book, academic article or conference paper. + A role that encompasses both ongoing reviewer responsibility for a bibo:Collection, such as a Journal or Series, and also a review performed for a bibo:Document, such as a book, academic article or conference paper. + + + + + + + + Room + + 100 Caldwell Hall; 114 Martha Van Rensselaer (Rushmore Conference Room) + Enter room number of name. + Room that provides a particular service or is used for a particular activity. + + + + + + + + School + + An institution for instruction in a particular skill or field. + Definition take from here: http://dictionary.reference.com/browse/school. + School of Architecture; School of Music + + + + + + + + Score + + Written musical composition for voice or instruments or both + + + + + + + + Screenplay + + Written script for a film production, including dialogue and descriptions of gestures, actions, shooting directions + + + + + + + + Seminar Series + + An organized series of a meeting for an exchange of ideas, typically put on by a department or center. + Applied Microeconomics Seminars; Future of Rural New York Seminar Series + For individual seminars, use seminar instead. core:ConferenceSeries and core:SeminarSeries are very similar. + + + + + + + + Service Providing Lab + + A laboratory that provides services + Ideally a defined class -- a Laboratory the provides some Service via the property + + + + + + + + Speech + + Text of a speech written in preparation for delivery of the speech. + + + + + + + + State Or Province + + Minnesota; Michigan; Indiana; New York; Quebec; Manitoba; Ontario + One of a number of areas or communities having their own governments and forming a federation under a sovereign government, as in the US. + Source of the Short Definition: http://www.thefreedictionary.com/state. + + + + + + + + Student + + A person who is enrolled in an educational institution. + Use only if no specific subclasses of core:Student describe the person. + + + + + + + + Student Organization + + A student organization is an organization, operated by students at a university, whose membership normally consists only of students. + Dancin' Gators + Definition take from here: http://en.wikipedia.org/wiki/Student_society + + + + + + + + Subnational Region + + Boroughs; townships; districts; the Midwest + For example, the Midwest, northeast U.S. + Short definition was partially taken from http://en.wikipedia.org/wiki/Subnational_entity. + Smaller administrative division into which a country may be divided. + + + + + + + + Teacher Role + + A role of serving as an educator + + + + + + + + Team + + An informal organization brought together for the purposes of a project or event. + VIVO Outreach Team; VIVO Ontology Team + + + + + + + + Translation + + The result of rendering a work from one language to another + + + + + + + + Transnational Region + + Any region that goes beyond national boundaries and does not fit into any subclass of core:TransnationalRegion. + None as yet. + Not sure how to access the "Editor's Comments". But as North America is a continent, it would be placed directly into the continent subclass and viewable through this class along with any other subclass entities. + sub-Saharan Africa, North America + + + + + + + + URLLink + The full URL. + Uniform Resource Locator (URL) specifies where an identified resource is available and the mechanism for retrieving it. + http://info.slis.indiana.edu/~katy/ + + + + + + + + Undergraduate Advising Relationship + + An advisory relationship in which a professor advises an undergraduate student. + + + + + + + + Undergraduate Student + + A person registered in an undergraduate program leading to a bachelor's degree or an undergraduate diploma or certificate. + + + + + + + + University + + An institution of higher education and research, which grants academic degrees in a variety of subjects, and provides both undergraduate education and postgraduate education. + Definition taken from: http://en.wikipedia.org/wiki/University + University of Florida; Washington University in St. Louis + + + + + + + + Video + + Audiovisual recording in video format + + + + + + + + Working Paper + + A document created as a basis for discussion or a very early draft of a formal paper + + + + + + + + Workshop Series + + An organized series of workshop events, whether repetitions of the same workshop or multiple different workshops. + Use workshop for individual events. + + + + + + + + + + + + + diff --git a/productMods/WEB-INF/filegraph/tbox/vivo-dcelements-1.5.owl b/productMods/WEB-INF/filegraph/tbox/vivo-dcelements-1.5.owl deleted file mode 100644 index 5622f49d..00000000 --- a/productMods/WEB-INF/filegraph/tbox/vivo-dcelements-1.5.owl +++ /dev/null @@ -1,24 +0,0 @@ - - - This namespace - http://purl.org/dc/elements/1.1/ - does not appear to have this element. - - diff --git a/productMods/WEB-INF/filegraph/tbox/vivo-dcelements-public-1.5.owl b/productMods/WEB-INF/filegraph/tbox/vivo-dcelements-public-1.5.owl new file mode 100644 index 00000000..8f495252 --- /dev/null +++ b/productMods/WEB-INF/filegraph/tbox/vivo-dcelements-public-1.5.owl @@ -0,0 +1,41 @@ + + + + Dublin Core elements + + + + + + + + + + + + diff --git a/productMods/WEB-INF/filegraph/tbox/vivo-dcterms-1.5.owl b/productMods/WEB-INF/filegraph/tbox/vivo-dcterms-1.5.owl deleted file mode 100644 index 175d75aa..00000000 --- a/productMods/WEB-INF/filegraph/tbox/vivo-dcterms-1.5.owl +++ /dev/null @@ -1,47 +0,0 @@ - - - Used to link a bibliographic item to one of its contributor: can be an author, an editor, a publisher, etc. - - - This term is intended to be used with non-literal values as defined in the DCMI Abstract Model (http://dublincore.org/documents/abstract-model/). As of December 2007, the DCMI Usage Board is seeking a way to express this intention with a formal range declaration. - - - Document1 isVersionOf Document2 - This term is intended to be used with non-literal values as defined in the DCMI Abstract Model (http://dublincore.org/documents/abstract-model/). As of December 2007, the DCMI Usage Board is seeking a way to express this intention with a formal range declaration. - - - This term is intended to be used with non-literal values as defined in the DCMI Abstract Model (http://dublincore.org/documents/abstract-model/). As of December 2007, the DCMI Usage Board is seeking a way to express this intention with a formal range declaration. - Used to relate a reference citation to a bibliographic resource. - - - Public definition source: http://dublincore.org/2008/01/14/dcterms.rdf# . -Examples of a Publisher include a person, an organization, or a service. Typically, the name of a Publisher should be used to indicate the entity. - Used to link a bibliographic item to its publisher. - - - - - diff --git a/productMods/WEB-INF/filegraph/tbox/vivo-dcterms-public-1.5.owl b/productMods/WEB-INF/filegraph/tbox/vivo-dcterms-public-1.5.owl new file mode 100644 index 00000000..22dfa0f0 --- /dev/null +++ b/productMods/WEB-INF/filegraph/tbox/vivo-dcterms-public-1.5.owl @@ -0,0 +1,47 @@ + + + + Dublin Core terms + + + + + + + + + + + + + + + + + diff --git a/productMods/WEB-INF/filegraph/tbox/vivo-event-1.5.owl b/productMods/WEB-INF/filegraph/tbox/vivo-event-1.5.owl deleted file mode 100644 index 48a3a4c3..00000000 --- a/productMods/WEB-INF/filegraph/tbox/vivo-event-1.5.owl +++ /dev/null @@ -1,112 +0,0 @@ - - - - - - - - - - - - - - - Only use if no specific subclasses of event:Event are appropriate. - This class will also display instances of subclasses under Event, e.g. Philosophy Department Discussion Club; 2009 Racker Lecture; screening of a documentary. In addition to a location in space and time, an event may have any or all the following qualities: actively participating agents, passive factors, work products. Also, it may be in a virtual space or part of a series such as a lecture series. - -The previous short definition was: "An arbitrary classification of a space/time region, by a cognitive agent." - - - - - - - - - - - - - - - - - - - Something that happens at a given place and time. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/productMods/WEB-INF/filegraph/tbox/vivo-event-public-1.5.owl b/productMods/WEB-INF/filegraph/tbox/vivo-event-public-1.5.owl new file mode 100644 index 00000000..5506ce2b --- /dev/null +++ b/productMods/WEB-INF/filegraph/tbox/vivo-event-public-1.5.owl @@ -0,0 +1,165 @@ + + + + Event Ontology + + + + + + + + + + + + + + + + + + + + + + + + + is agent in + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Event + Only use if no specific subclasses of event:Event are appropriate. + Something that happens at a given place and time. + This class will also display instances of subclasses under Event, e.g. Philosophy Department Discussion Club; 2009 Racker Lecture; screening of a documentary. In addition to a location in space and time, an event may have any or all the following qualities: actively participating agents, passive factors, work products. Also, it may be in a virtual space or part of a series such as a lecture series. + +The previous short definition was: "An arbitrary classification of a space/time region, by a cognitive agent." + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + diff --git a/productMods/WEB-INF/filegraph/tbox/vivo-fabio-1.5.owl b/productMods/WEB-INF/filegraph/tbox/vivo-fabio-public-1.5.owl similarity index 86% rename from productMods/WEB-INF/filegraph/tbox/vivo-fabio-1.5.owl rename to productMods/WEB-INF/filegraph/tbox/vivo-fabio-public-1.5.owl index f3a8da67..aaab5b05 100644 --- a/productMods/WEB-INF/filegraph/tbox/vivo-fabio-1.5.owl +++ b/productMods/WEB-INF/filegraph/tbox/vivo-fabio-public-1.5.owl @@ -1,4 +1,6 @@ + + FRBR-aligned Bibiographic Ontology + A recommendation on the appropriate treatment and care of people with a specific disease or condition, based on the best available evidence, designed to help healthcare professionals in their work. + Clinical Guideline A recommendation on the appropriate treatment and care of people with a specific disease or condition, based on the best available evidence, designed to help healthcare professionals in their work. - A verbal or written remark concerning some entity. In written form, a comment is often appended to that entity and termed an annotation. Within computer programs or ontologies, comments are added to enhance human understanding, and are usually prefaced by + + Comment A verbal or written remark concerning some entity. In written form, a comment is often appended to that entity and termed an annotation. Within computer programs or ontologies, comments are added to enhance human understanding, and are usually prefaced by a special syntactic symbol that ensures they are ignored during execution of the program. has super-classes + A formal correction to an error introduced by the publisher into a previously published document. - + Erratum A formal correction to an error introduced by the publisher into a previously published document. diff --git a/productMods/WEB-INF/filegraph/tbox/vivo-foaf-1.5.owl b/productMods/WEB-INF/filegraph/tbox/vivo-foaf-1.5.owl deleted file mode 100644 index 011838f8..00000000 --- a/productMods/WEB-INF/filegraph/tbox/vivo-foaf-1.5.owl +++ /dev/null @@ -1,208 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - The most general classification of a person - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - This class will display all the instances in the subclasses below it, as well as any organizations that were added as part of this generic class because there wasn't a specific class available. - Only use if no specific subclasses of foaf:organization desribe the organization. - A generic class encompassing several types of organizations. - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Ued to describe an organization related to bibliographic items such as a publishing company, etc. - - - - - - - - - - - - - - - - - - - - - Agents are things that do stuff - - - - - - - see: http://xmlns.com/foaf/spec/#term_Agent - - - - - - - - - - - - - - - - - - - - - - - - - Used to describe any "agent" related to bibliographic items. Such agents can be persons, organizations or groups of any kind. - - - - - - - - - - A group can also be an organization but need not be; typically used for looser associations of people or organizations acting together in some fashion, not necessarily through formal agreement or on a long-term basis. Added to the VIVO ontology to be able to support informal and perhaps even private groups of people around an idea, funding opportunity, or event. - -see: http://xmlns.com/foaf/spec/#term_Group - A collection of individual agents (and may itself play the role of a Agent, ie. something that can perform actions). - - - Definition take from: http://xmlns.com/foaf/spec/#term_based_near . foaf indicates that the status of this term is "unstable". "The based_near relationship relates two "spatial things" (anything that can be somewhere), the latter typically described using the geo:lat / geo:long geo-positioning vocabulary (http://www.w3.org/2003/01/geo/wgs84_pos#). This allows us to say describe the typical latitute and longitude of, say, a Person (people are spatial things - they can be places) without implying that a precise location has been given." - Used to link an agent, related to bibliographic things, to a place where it is based near: can be a city, a monument, a building, etc. - - - - - http://xmlns.com/foaf/spec/#term_lastName. Note from foaf: "The lastName property is provided (alongside firstName) as a mechanism to support legacy data that cannot be easily interpreted in terms of the (otherwise preferred) familyName and givenName properties. The concepts of 'first' and 'last' names do not work well across cultural and linguistic boundaries; however they are widely used in addressbooks and databases." - - - http://xmlns.com/foaf/spec/#term_firstName. Note from foaf: "The lastName property is provided (alongside firstName) as a mechanism to support legacy data that cannot be easily interpreted in terms of the (otherwise preferred) familyName and givenName properties. The concepts of 'first' and 'last' names do not work well across cultural and linguistic boundaries; however they are widely used in addressbooks and databases." - - - - diff --git a/productMods/WEB-INF/filegraph/tbox/vivo-foaf-public-1.5.owl b/productMods/WEB-INF/filegraph/tbox/vivo-foaf-public-1.5.owl new file mode 100644 index 00000000..8d856433 --- /dev/null +++ b/productMods/WEB-INF/filegraph/tbox/vivo-foaf-public-1.5.owl @@ -0,0 +1,196 @@ + + + + FOAF + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + Agent + Agents are things that do stuff + see: http://xmlns.com/foaf/spec/#term_Agent + Used to describe any "agent" related to bibliographic items. Such agents can be persons, organizations or groups of any kind. + + + + + + + + Group + + A collection of individual agents (and may itself play the role of a Agent, ie. something that can perform actions). + A group can also be an organization but need not be; typically used for looser associations of people or organizations acting together in some fashion, not necessarily through formal agreement or on a long-term basis. Added to the VIVO ontology to be able to support informal and perhaps even private groups of people around an idea, funding opportunity, or event. + +see: http://xmlns.com/foaf/spec/#term_Group + + + + + + + + Organization + + A generic class encompassing several types of organizations. + Only use if no specific subclasses of foaf:organization desribe the organization. + This class will display all the instances in the subclasses below it, as well as any organizations that were added as part of this generic class because there wasn't a specific class available. + Ued to describe an organization related to bibliographic items such as a publishing company, etc. + + + + + + + + Person + + The most general classification of a person + + + + + + + diff --git a/productMods/WEB-INF/filegraph/tbox/vivo-pws-1.5.owl b/productMods/WEB-INF/filegraph/tbox/vivo-pws-1.5.owl deleted file mode 100644 index c4f46b89..00000000 --- a/productMods/WEB-INF/filegraph/tbox/vivo-pws-1.5.owl +++ /dev/null @@ -1,39 +0,0 @@ - - - - For data ingest from authoritative sources to record the actual way a person was listed, as potentially valuable information for provenance and person disambiguation. Represents one person's information from one source at one particular time. - For data ingest from authoritative sources to record the actual way a person was listed, as potentially valuable information for provenance and person disambiguation. - - - - - - - - - - - - - - diff --git a/productMods/WEB-INF/filegraph/tbox/vivo-pws-public-1.5.owl b/productMods/WEB-INF/filegraph/tbox/vivo-pws-public-1.5.owl new file mode 100644 index 00000000..c1dfc4e8 --- /dev/null +++ b/productMods/WEB-INF/filegraph/tbox/vivo-pws-public-1.5.owl @@ -0,0 +1,41 @@ + + + + provenance support + + + + + + + + + + + + diff --git a/productMods/WEB-INF/filegraph/tbox/vivo-skos-1.5.owl b/productMods/WEB-INF/filegraph/tbox/vivo-skos-public-1.5.owl similarity index 83% rename from productMods/WEB-INF/filegraph/tbox/vivo-skos-1.5.owl rename to productMods/WEB-INF/filegraph/tbox/vivo-skos-public-1.5.owl index 0dda4227..107038a6 100644 --- a/productMods/WEB-INF/filegraph/tbox/vivo-skos-1.5.owl +++ b/productMods/WEB-INF/filegraph/tbox/vivo-skos-public-1.5.owl @@ -1,4 +1,6 @@ + + SKOS (Simple Knowledge Organization System) + + Concept An idea or notion; a unit of thought. + Public description modified from the information on this page: http://www.w3.org/TR/2005/WD-swbp-skos-core-guide-20050510/#sechierarchy . - + narrower term + - + related + broader term + + + + + + + + + + + + + + + + + + + + + + + + + + + + part_of (RO) + + + + + + + + has_part (RO) + + + + + + + + inheres in + + + + + + + + bearer of + + + + + + + + + participates in + + + + + + + + has participant + + + + + + + + is about + + + + + + + + location of + + + + + + + + + located in + + + + + + + + has input + + + + + + + + + has output + + + + + + + + + member of + + + + + + + + + has member + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + assigned by + Relates a Relationship (as a predicate or n-ary relation over one or more Thing) to an Agent that defined or instantiated the predicate instance. + + + + + + + + + + + assigns + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + related by + Relates a Thing to a Relationship as a Thing that is somehow related to other Thing in the same Relationship instance. A Relationship instnace is a predicate over Thing and is created by an Agent. + + + + + + + + + relates + Relates a Relationship instance to the one or more Thing of the Relationship. There is a separate property (assigned by) to relate to the Agent that defines the Relationship. + + + + + + + + + + + + + + + + + + + + + + + + + + + + + has_monetary_amount + + + + + + + + has_value + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + self governing + + + + + + + + + service + + + + + + + + + software + + + + + + + + + data + + + + + + + + + journal article (IAO) + + + + + + + + + information content entity (IAO) + + + + + + + + + scalar measurement datum + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + document (IAO) + + + + + + + + + global citation count + + + + + + + + + administrator role + + + + + + + + + advising process + + + + + + + + + + + + + + + + + attending process + + + + + + + + + + + + + + + + + awarded degree + + The awarding of a degree by an agent to another agent. It is mostly for academic degrees. + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + editorship + + A relationship that represents the recognition of an agent as an editor. + + + + + + + + educational process + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + organizing process + + + + + + + + + + + + + + + + + + + + + + + + + presenting process + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + has_global_citation_frequency + + + geographic_location_of + + + geographical region + + + reviewed_in + + + geographically_within + + + + + + +