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VIVOONT-274 (how to represent Clinical Trials)

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sjm222 2010-12-22 02:26:36 +00:00
parent 0ea6cd736a
commit 33ce4a7296
6 changed files with 2736 additions and 2508 deletions
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96
productMods/WEB-INF/ontologies/user/scirr-1.2-annotations.rdf
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@ -13,16 +13,17 @@
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" >
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#Instrument">
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">10</vitro:displayRankAnnot>
<rdfs:label xml:lang="en-US">Instrument</rdfs:label>
<vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGroupequipment"/>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#Protocol">
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">15</vitro:displayRankAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<rdfs:label xml:lang="en-US">Protocol</rdfs:label>
</rdf:Description>
@ -30,12 +31,36 @@
<vitro:ontologyPrefixAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">scirr</vitro:ontologyPrefixAnnot>
<rdfs:label xml:lang="en-US">scientific-research-resource</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#Phase2ClinicalTrial">
<vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGroupactivities"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">Phase 2 Clinical Trial</rdfs:label>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">5</vitro:displayRankAnnot>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#ClinicalTrial">
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">ClinicalTrial</rdfs:label>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">1</vitro:displayLimitAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#Phase0ClinicalTrial">
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
<rdfs:label xml:lang="en-US">Phase 0 Clinical Trial</rdfs:label>
<vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGroupactivities"/>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">6</vitro:displayLimitAnnot>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#Phase1ClinicalTrial">
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">4</vitro:displayRankAnnot>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<rdfs:label xml:lang="en-US">ClinicalTrial</rdfs:label>
<rdfs:label xml:lang="en-US">Phase 1 Clinical Trial</rdfs:label>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGroupactivities"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#providesAccessTo">
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
@ -44,6 +69,7 @@
<rdfs:label xml:lang="en-US">providesAccessTo</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#ResearchProject">
<vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGroupactivities"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
@ -51,34 +77,67 @@
<rdfs:label xml:lang="en-US">ResearchProject</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#StorageService">
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">20</vitro:displayRankAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
<vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGroupactivities"/>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<rdfs:label xml:lang="en-US">StorageService</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#hasDocumentation">
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupoverview"/>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">hasDocumentation</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#studyPopulationCount">
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">20</vitro:displayRankAnnot>
<rdfs:label xml:lang="en-US">study population count</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#Phase4ClinicalTrial">
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">4</vitro:displayRankAnnot>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">Phase 4 Clinical Trial</rdfs:label>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGroupactivities"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#protocolRealizedBy">
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">protocolRealizedBy</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#Phase3ClinicalTrial">
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<rdfs:label xml:lang="en-US">Phase 3 Clinical Trial</rdfs:label>
<vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGroupactivities"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#irbNumber">
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupidentifiers"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Internal Review Board (IRB) number for a Clinical Trial</vitro:publicDescriptionAnnot>
<rdfs:label xml:lang="en-US">Internal Review Board (IRB) number</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#documentationFor">
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupoverview"/>
<vitro:selectFromExistingAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#boolean">true</vitro:selectFromExistingAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">documentationFor</rdfs:label>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#AccessService">
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">20</vitro:displayRankAnnot>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
<vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGroupactivities"/>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<rdfs:label xml:lang="en-US">AccessService</rdfs:label>
</rdf:Description>
@ -94,18 +153,21 @@
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdfs:label xml:lang="en-US">realizesProtocol</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#HumanStudy">
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#nctId">
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">4</vitro:displayRankAnnot>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<rdfs:label xml:lang="en-US">HumanStudy</rdfs:label>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">1</vitro:displayLimitAnnot>
<vitro:publicDescriptionAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#string">ClinicalTrials.gov registry number</vitro:publicDescriptionAnnot>
<vitro:inPropertyGroupAnnot rdf:resource="http://vivoweb.org/ontology#vitroPropertyGroupidentifiers"/>
<rdfs:label xml:lang="en-US">National Clinical Trials (NCT) number</rdfs:label>
</rdf:Description>
<rdf:Description rdf:about="http://vivoweb.org/ontology/scientific-research-resource#ProductionService">
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayRankAnnot>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<vitro:inClassGroup rdf:resource="http://vivoweb.org/ontology#vitroClassGroupactivities"/>
<rdfs:label xml:lang="en-US">ProductionService</rdfs:label>
<vitro:hiddenFromDisplayBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:prohibitedFromUpdateBelowRoleLevelAnnot rdf:resource="http://vitro.mannlib.cornell.edu/ns/vitro/role#public"/>
<vitro:displayLimitAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">-1</vitro:displayLimitAnnot>
<vitro:displayRankAnnot rdf:datatype="http://www.w3.org/2001/XMLSchema#int">20</vitro:displayRankAnnot>
</rdf:Description>
</rdf:RDF>