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1. Added download file in csv format for map of science info.

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This commit is contained in:
tankchintan 2011-05-18 22:02:00 +00:00
parent 2ab43d907a
commit 43a391a0ae
2 changed files with 1224 additions and 30 deletions
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1145
src/edu/cornell/mannlib/vitro/webapp/visualization/constants/MapOfScienceConstants.java Normal file
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109
src/edu/cornell/mannlib/vitro/webapp/visualization/mapofscience/MapOfScienceVisualizationRequestHandler.java
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@ -3,6 +3,7 @@
package edu.cornell.mannlib.vitro.webapp.visualization.mapofscience;
import java.io.IOException;
import java.text.DecimalFormat;
import java.util.HashMap;
import java.util.HashSet;
import java.util.Map;
@ -13,7 +14,9 @@ import mapping.ScienceMappingResult;
import org.apache.commons.lang.StringEscapeUtils;
import org.apache.commons.lang.StringUtils;
import org.apache.commons.lang.math.NumberUtils;
import org.apache.commons.logging.Log;
import org.jgrapht.util.MathUtil;
import com.google.gson.Gson;
import com.hp.hpl.jena.query.Dataset;
@ -23,6 +26,7 @@ import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.Res
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.MapOfScienceConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VisConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.entitycomparison.OrganizationUtilityFunctions;
@ -88,7 +92,7 @@ public class MapOfScienceVisualizationRequestHandler implements
private Map<String, String> getSubjectEntityAndGenerateDataResponse(
VitroRequest vitroRequest, Log log, Dataset dataset,
String subjectEntityURI, VisConstants.DataVisMode visMode)
String subjectEntityURI, VisConstants.DataVisMode dataOuputFormat)
throws MalformedQueryParametersException {
Entity organizationEntity = SelectOnModelUtilities
@ -96,7 +100,7 @@ public class MapOfScienceVisualizationRequestHandler implements
if (organizationEntity.getSubEntities() == null) {
if (VisConstants.DataVisMode.JSON.equals(visMode)) {
if (VisConstants.DataVisMode.JSON.equals(dataOuputFormat)) {
return prepareStandaloneDataErrorResponse();
} else {
return prepareDataErrorResponse();
@ -123,7 +127,7 @@ public class MapOfScienceVisualizationRequestHandler implements
if (allDocumentURIToVOs.isEmpty() && documentURIForAssociatedPeopleTOVO.isEmpty()) {
if (VisConstants.DataVisMode.JSON.equals(visMode)) {
if (VisConstants.DataVisMode.JSON.equals(dataOuputFormat)) {
return prepareStandaloneDataErrorResponse();
} else {
return prepareDataErrorResponse();
@ -131,7 +135,7 @@ public class MapOfScienceVisualizationRequestHandler implements
} else {
if (VisConstants.DataVisMode.JSON.equals(visMode)) {
if (VisConstants.DataVisMode.JSON.equals(dataOuputFormat)) {
return prepareStandaloneDataResponse(vitroRequest, organizationEntity);
} else {
return prepareDataResponse(vitroRequest, organizationEntity);
@ -160,7 +164,7 @@ public class MapOfScienceVisualizationRequestHandler implements
}
String outputFileName = UtilityFunctions.slugify(entityLabel)
+ "_publications-per-year" + ".csv";
+ "_discipline-to-publications" + ".csv";
Map<String, String> fileData = new HashMap<String, String>();
@ -170,7 +174,7 @@ public class MapOfScienceVisualizationRequestHandler implements
fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
"application/octet-stream");
fileData.put(DataVisualizationController.FILE_CONTENT_KEY,
getEntityPublicationsPerYearCSVContent(entity));
getDisciplineToPublicationsCSVContent(entity));
return fileData;
}
@ -368,26 +372,14 @@ public class MapOfScienceVisualizationRequestHandler implements
int mappedPublicationCount = 0;
int publicationsWithInvalidJournalCount = 0;
ScienceMappingResult result = null;
Map<Integer, Float> subdisciplineToActivity = new HashMap<Integer, Float>();
try {
result = (new ScienceMapping()).generateScienceMappingResult(journalToPublicationCount);
} catch (NumberFormatException e) {
System.err.println("NumberFormatException coming from Map Of Science Vis");
e.printStackTrace();
} catch (IOException e) {
System.err.println("IOException coming from Map Of Science Vis");
e.printStackTrace();
} finally {
if (result != null) {
subdisciplineToActivity = result.getMappedResult();
publicationsWithInvalidJournalCount = Math.round(result.getUnMappedPublications());
mappedPublicationCount = Math.round(result.getMappedPublications());
}
ScienceMappingResult result = getScienceMappingResult(journalToPublicationCount);
if (result != null) {
subdisciplineToActivity = result.getMappedResult();
publicationsWithInvalidJournalCount = Math.round(result.getUnMappedPublications());
mappedPublicationCount = Math.round(result.getMappedPublications());
}
// System.out.println("subdisciplineToActivity " + subdisciplineToActivity);
@ -398,24 +390,81 @@ public class MapOfScienceVisualizationRequestHandler implements
entityJson.setSubdisciplineActivity(subdisciplineToActivity);
}
private String getEntityPublicationsPerYearCSVContent(Entity entity) {
private ScienceMappingResult getScienceMappingResult(
Map<String, Integer> journalToPublicationCount) {
ScienceMappingResult result = null;
try {
result = (new ScienceMapping()).generateScienceMappingResult(journalToPublicationCount);
} catch (NumberFormatException e) {
System.err.println("NumberFormatException coming from Map Of Science Vis");
e.printStackTrace();
} catch (IOException e) {
System.err.println("IOException coming from Map Of Science Vis");
e.printStackTrace();
}
return result;
}
private String getDisciplineToPublicationsCSVContent(Entity subjectEntity) {
StringBuilder csvFileContent = new StringBuilder();
csvFileContent.append("Entity Name, Publication Count, Entity Type\n");
csvFileContent.append("Discipline, Publication Count, % Activity\n");
for (SubEntity subEntity : entity.getSubEntities()) {
Set<Activity> publicationsForEntity = new HashSet<Activity>();
for (SubEntity subEntity : subjectEntity.getSubEntities()) {
csvFileContent.append(StringEscapeUtils.escapeCsv(subEntity.getIndividualLabel()));
publicationsForEntity.addAll(subEntity.getActivities());
}
PublicationJournalStats publicationStats = getPublicationJournalStats(publicationsForEntity);
ScienceMappingResult result = getScienceMappingResult(publicationStats.journalToPublicationCount);
Map<Integer, Float> disciplineToPublicationCount = new HashMap<Integer, Float>();
Float totalMappedPublications = new Float(0);
if (result != null) {
for (Map.Entry<Integer, Float> currentMappedSubdiscipline : result.getMappedResult().entrySet()) {
float updatedPublicationCount = currentMappedSubdiscipline.getValue();
Integer lookedUpDisciplineID = MapOfScienceConstants.SUB_DISCIPLINE_ID_TO_DISCIPLINE_ID
.get(currentMappedSubdiscipline.getKey());
if (disciplineToPublicationCount.containsKey(lookedUpDisciplineID)) {
updatedPublicationCount += disciplineToPublicationCount.get(lookedUpDisciplineID);
}
disciplineToPublicationCount.put(lookedUpDisciplineID, updatedPublicationCount);
}
totalMappedPublications = result.getMappedPublications();
}
DecimalFormat percentageActivityFormat = new DecimalFormat("#.###");
for (Map.Entry<Integer, Float> currentMappedDiscipline : disciplineToPublicationCount.entrySet()) {
csvFileContent.append(StringEscapeUtils.escapeCsv(MapOfScienceConstants.DISCIPLINE_ID_TO_LABEL.get(currentMappedDiscipline.getKey())));
csvFileContent.append(", ");
csvFileContent.append(subEntity.getActivities().size());
csvFileContent.append(percentageActivityFormat.format(currentMappedDiscipline.getValue()));
csvFileContent.append(", ");
String allTypes = StringUtils.join(subEntity.getEntityTypeLabels(), "; ");
if (totalMappedPublications > 0) {
csvFileContent.append(percentageActivityFormat.format(100 * currentMappedDiscipline.getValue() / totalMappedPublications));
} else {
csvFileContent.append("Not Available");
}
csvFileContent.append(StringEscapeUtils.escapeCsv(allTypes));
csvFileContent.append("\n");
}
return csvFileContent.toString();
}