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III. Upgrade Instructions
BOGUS -- INSERT REAL STUFF HERE, EVENTUALLY
- IV. Knowledge Base Migration
-
+ IV .Knowledge Base Migration
+
+ Changes to the VIVO core ontology may require corresponding
+ modifications to the knowledge base instance data and ontology annotations.
+ When VIVO first starts up following the upgrade, it will
+ initiate a process to examine the knowledge base and apply necessary
+ changes. The knowledge base migration process for release 1.5 will make
+ the following types of changes:
+
+
+ -
+ The vivo:ResearchLaboratory class has been removed. All instances of vivo:ResearchLaboratory will be
+ retyped to its superclass vivo:Laboratory.
+
+
+
+ -
+ Annotation property default values
+
+ -
+ If a site has modified the value of a vitro annotation (such
+ as
+ displayRankAnnot or displayLimitAnnot) so that it is no longer using
+ the default, then that setting will be left unchanged.
+
+ If a site is using the default value of a vitro annotation, and the
+ default has been changed in the new version of the ontology, then the
+ new default value will be propagated to the knowledge base.
+
+
+
+ In addition to the logs described in step 8 of the previous section, the knowledge base migration
+ process will log copies of all additions and deletions that were made to the knowledge base in the following files:
+
+
+ -
+
webapps/vivo/WEB-INF/ontologies/update/changedData/removedData.n3
+
+ -
+ An N3 file containing all the statements that were removed from the knowledge base.
+
+
+
+ -
+
webapps/vivo/WEB-INF/ontologies/update/changedData/addedData.n3
+
+ -
+ An N3 file containing all the statements that were added to the knowledge base.
+
+
V. Review the VIVO Terms of Use
VIVO comes with a "Terms of Use" statement linked from the footer. The "Site Name"