Added licensing information to the files I created. Deleted freemarker files/folders that i've created inside src/edu/cornell/mannlib/vitro/webapp/visualization. Since chintan is working on Freemarker-ization, he's going to take care of it.

productMods/js/visualization/entityComparison/constants.js

@@ -1,3 +1,4 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
 
 //Hard coded color constants
 var	TURQUOISE = "#8DD3C7";

productMods/js/visualization/entityComparison/util.js

@@ -1,4 +1,7 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
+
 /**
+
  * init sets some initial options for the default graph. i.e for when the page
  * is initially loaded or when its refreshed or when all the checkboxes on the
  * page are unchecked.

src/edu/cornell/mannlib/vitro/webapp/controller/visualization/freemarker/VisualizationController.java

@@ -1,5 +0,0 @@
-package edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker;
-
-public class VisualizationController {
-
-}

src/edu/cornell/mannlib/vitro/webapp/visualization/coprincipalinvestigator/CoPIGrantCountQueryRunner.java

@@ -1,3 +1,5 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
+
 package edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator;
 
 import java.util.ArrayList;
@@ -33,7 +35,10 @@ import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Grant;
 import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.CoPINode;
 import edu.cornell.mannlib.vitro.webapp.visualization.visutils.QueryRunner;
 import edu.cornell.mannlib.vitro.webapp.visualization.visutils.UniqueIDGenerator;
-
+/**
+ * @author bkoniden
+ * Deepak Konidena
+ */
 public class CoPIGrantCountQueryRunner implements QueryRunner<CoPIData> {
 	
 	private static final int MAX_PI_PER_GRANT_ALLOWED = 100;

src/edu/cornell/mannlib/vitro/webapp/visualization/coprincipalinvestigator/CoPIGrantCountRequestHandler.java

@@ -1,3 +1,4 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
 package edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator;
 
 import java.io.IOException;
@@ -27,7 +28,10 @@ import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.CoPINode;
 import edu.cornell.mannlib.vitro.webapp.visualization.visutils.QueryRunner;
 import edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions;
 import edu.cornell.mannlib.vitro.webapp.visualization.visutils.VisualizationRequestHandler;
-
+/**
+ * @author bkoniden
+ * Deepak Konidena
+ */
 public class CoPIGrantCountRequestHandler implements VisualizationRequestHandler{
 	
 	public void generateVisualization(VitroRequest vitroRequest, HttpServletRequest request, HttpServletResponse response, Log log, DataSource dataSource){

src/edu/cornell/mannlib/vitro/webapp/visualization/coprincipalinvestigator/CoPIGraphMLWriter.java

@@ -1,3 +1,5 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
+
 package edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator;
 
 import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationController;
@@ -13,7 +15,10 @@ import java.util.Collections;
 import java.util.List;
 import java.util.Set;
 import java.util.Map;
-
+/**
+ * @author bkoniden
+ * Deepak Konidena
+ */
 public class CoPIGraphMLWriter {
 	
 	private StringBuilder coPIGraphMLContent;

src/edu/cornell/mannlib/vitro/webapp/visualization/coprincipalinvestigator/CoPINodeComparator.java

@@ -1,3 +1,5 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
+
 package edu.cornell.mannlib.vitro.webapp.visualization.coprincipalinvestigator;
 
 import java.util.Comparator;
@@ -7,6 +9,7 @@ import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.CoPINode;
 /**
  * This Comparator is used to sort the CoPINodes based on their IDs in ascending order.
  * @author bkoniden
+ * Deepak Konidena
  */
 
 public class CoPINodeComparator implements Comparator<CoPINode>{

src/edu/cornell/mannlib/vitro/webapp/visualization/entitycomparison/EntitySubOrganizationTypesQueryRunner.java

@@ -1,3 +1,4 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
 package edu.cornell.mannlib.vitro.webapp.visualization.entitycomparison;
 
 import java.util.HashMap;
@@ -27,6 +28,10 @@ import edu.cornell.mannlib.vitro.webapp.visualization.visutils.QueryRunner;
 import java.util.Set;
 import java.util.HashSet;
 
+/**
+ * @author bkoniden
+ * Deepak Konidena
+ */
 public class EntitySubOrganizationTypesQueryRunner implements QueryRunner<Map<String, Set<String>>> {
 	
 	protected static final Syntax SYNTAX = Syntax.syntaxARQ;

src/edu/cornell/mannlib/vitro/webapp/visualization/freemarker/VisTestController.java

@@ -1,53 +0,0 @@
-package edu.cornell.mannlib.vitro.webapp.visualization.freemarker;
-
-import java.util.ArrayList;
-import java.util.HashMap;
-import java.util.List;
-import java.util.Map;
-
-import javax.servlet.http.HttpServletRequest;
-import javax.servlet.http.HttpServletResponse;
-
-import org.apache.commons.logging.Log;
-
-import com.hp.hpl.jena.query.DataSource;
-
-import edu.cornell.mannlib.vitro.webapp.beans.Portal;
-import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
-import edu.cornell.mannlib.vitro.webapp.controller.freemarker.FreemarkerHttpServlet;
-import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
-import edu.cornell.mannlib.vitro.webapp.visualization.visutils.VisualizationRequestHandler;
-
-
-public class VisTestController extends FreemarkerHttpServlet implements VisualizationRequestHandler {
-	
-	private static final String TEMPLATE_DEFAULT = "vistest.ftl";
-	
-	public void generateVisualization(VitroRequest vitroRequest, HttpServletRequest request, HttpServletResponse response, Log log, DataSource dataSource){
-			
-			return;
-		}
-
-	@Override
-	protected ResponseValues processRequest(VitroRequest vitroRequest){
-		
-		Portal portal = vitroRequest.getPortal();
-		Map<String, Object> body = new HashMap<String, Object>();
-		
-		String egoURI = vitroRequest.getParameter(VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY);
-		String renderMode = vitroRequest.getParameter(VisualizationFrameworkConstants.RENDER_MODE_KEY);
-		String visMode = vitroRequest.getParameter(VisualizationFrameworkConstants.VIS_MODE_KEY);
-		
-		List<String> parameters = new ArrayList<String>();
-		
-		parameters.add(egoURI);
-		parameters.add(renderMode);
-		parameters.add(visMode);
-		
-		body.put("parameters", parameters);
-		body.put("title", getTitle("VIVO Vis"));
-		
-		return new TemplateResponseValues(TEMPLATE_DEFAULT, body);
-	}
-	
-}

src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/Child.java

@@ -1,8 +1,13 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
 package edu.cornell.mannlib.vitro.webapp.visualization.valueobjects;
 
 import java.util.Set;
 import java.util.HashSet;
-
+/**
+ * @author bkoniden
+ * Deepak Konidena
+ *
+ */
 public class Child extends Individual {
 
 	Set<BiboDocument> documents = new HashSet<BiboDocument>();

src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/CoPIEdge.java

@@ -1,3 +1,4 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
 package edu.cornell.mannlib.vitro.webapp.visualization.valueobjects;
 
 import java.util.Collections;
@@ -13,7 +14,7 @@ import edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions;
 /**
  * This stores edge information for Co-PI vis.
  * @author bkoniden
- *
+ * Deepak Konidena
  */
 public class CoPIEdge {
 	

src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/CoPINode.java

@@ -1,3 +1,4 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
 package edu.cornell.mannlib.vitro.webapp.visualization.valueobjects;
 
 import java.util.Collections;
@@ -13,6 +14,7 @@ import edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions;
 /**
  * CoPINode is the node in a CoPI vis.
  * @author bkoniden
+ * Deepak Konidena
  */
 public class CoPINode extends Individual {
 	

src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/Department.java

@@ -1,7 +1,13 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
 package edu.cornell.mannlib.vitro.webapp.visualization.valueobjects;
 
 import java.util.Set;
 
+/**
+ * @author bkoniden
+ * Deepak Konidena
+ *
+ */
 public class Department extends Individual{
 	
 	Set<BiboDocument> publication;

src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/Entity.java

@@ -1,9 +1,15 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
 package edu.cornell.mannlib.vitro.webapp.visualization.valueobjects;
 
 import java.util.HashSet;
 import java.util.Set;
 import java.util.LinkedHashSet;
 
+/**
+ * @author bkoniden
+ * Deepak Konidena
+ *
+ */
 public class Entity extends Individual{
 	
 	Set<BiboDocument> publications = new HashSet<BiboDocument>();

src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/Grant.java

@@ -1,7 +1,14 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
 package edu.cornell.mannlib.vitro.webapp.visualization.valueobjects;
 
 import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
 
+/**
+ * @author bkoniden
+ * Deepak Konidena
+ *
+ */
+
 public class Grant extends Individual {
 	
 	private String grantStartYear;

src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/JsonObject.java

@@ -1,3 +1,4 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
 package edu.cornell.mannlib.vitro.webapp.visualization.valueobjects;
 
 import java.util.ArrayList;
@@ -7,7 +8,7 @@ import java.util.List;
  * JsonObject is used for creating data in JSON format, 
  * by just using the fields that are required to be included.
  * @author bkoniden
- *
+ * Deepak Konidena
  */
 public class JsonObject {
 	

src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/Person.java

@@ -1,8 +1,13 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
 package edu.cornell.mannlib.vitro.webapp.visualization.valueobjects;
 
 import java.util.Set;
 import java.util.HashSet;
 
+/**
+ * @author bkoniden
+ * Deepak Konidena
+ */
 public class Person extends Individual {
 
 	Set<BiboDocument> documents = new HashSet<BiboDocument>();

src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/SubEntity.java

@@ -1,3 +1,4 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
 package edu.cornell.mannlib.vitro.webapp.visualization.valueobjects;
 
 import java.util.HashMap;
@@ -5,6 +6,10 @@ import java.util.Map;
 import java.util.Set;
 import java.util.HashSet;
 
+/**
+ * @author bkoniden
+ * Deepak Konidena
+ */
 public class SubEntity extends Individual {
 
 	Set<BiboDocument> publications = new HashSet<BiboDocument>();

themes/vivo-basic/css/visualization/entityComparison/layout.css

@@ -1,3 +1,4 @@
+/* $This file is distributed under the terms of the license in /doc/license.txt$ */
 @CHARSET "UTF-8";
 
 head,#body {