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1. Refactored package structure for the java files to remove the work "freemarker".

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2. Did more work for setting up the backend for the science map visualziation.
This commit is contained in:
cdtank 2011-05-12 20:51:47 +00:00
parent 8713552eb5
commit 5f8e6e4172
37 changed files with 355 additions and 88 deletions
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2
src/edu/cornell/mannlib/vitro/webapp/controller/visualization/freemarker/AjaxVisualizationController.java → src/edu/cornell/mannlib/vitro/webapp/controller/visualization/AjaxVisualizationController.java
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@ -1,6 +1,6 @@
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
package edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker;
package edu.cornell.mannlib.vitro.webapp.controller.visualization;
import java.io.IOException;

2
src/edu/cornell/mannlib/vitro/webapp/controller/visualization/freemarker/DataVisualizationController.java → src/edu/cornell/mannlib/vitro/webapp/controller/visualization/DataVisualizationController.java
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@ -1,6 +1,6 @@
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
package edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker;
package edu.cornell.mannlib.vitro.webapp.controller.visualization;
import java.io.IOException;
import java.util.Map;

2
src/edu/cornell/mannlib/vitro/webapp/controller/visualization/freemarker/ShortURLVisualizationController.java → src/edu/cornell/mannlib/vitro/webapp/controller/visualization/ShortURLVisualizationController.java
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@ -1,6 +1,6 @@
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
package edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker;
package edu.cornell.mannlib.vitro.webapp.controller.visualization;
import java.util.ArrayList;
import java.util.HashMap;

2
src/edu/cornell/mannlib/vitro/webapp/controller/visualization/freemarker/StandardVisualizationController.java → src/edu/cornell/mannlib/vitro/webapp/controller/visualization/StandardVisualizationController.java
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@ -1,6 +1,6 @@
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
package edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker;
package edu.cornell.mannlib.vitro.webapp.controller.visualization;
import javax.servlet.ServletContext;

2
src/edu/cornell/mannlib/vitro/webapp/controller/visualization/freemarker/VisualizationFrameworkConstants.java → src/edu/cornell/mannlib/vitro/webapp/controller/visualization/VisualizationFrameworkConstants.java
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@ -1,6 +1,6 @@
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
package edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker;
package edu.cornell.mannlib.vitro.webapp.controller.visualization;
import java.util.regex.Pattern;

2
src/edu/cornell/mannlib/vitro/webapp/controller/visualization/freemarker/VisualizationInjector.java → src/edu/cornell/mannlib/vitro/webapp/controller/visualization/VisualizationInjector.java
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@ -1,5 +1,5 @@
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
package edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker;
package edu.cornell.mannlib.vitro.webapp.controller.visualization;
import java.util.Map;

2
src/edu/cornell/mannlib/vitro/webapp/controller/visualization/freemarker/VisualizationsDependencyInjector.java → src/edu/cornell/mannlib/vitro/webapp/controller/visualization/VisualizationsDependencyInjector.java
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@ -1,5 +1,5 @@
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
package edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker;
package edu.cornell.mannlib.vitro.webapp.controller.visualization;
import java.util.Map;

2
src/edu/cornell/mannlib/vitro/webapp/visualization/coauthorship/CoAuthorshipGraphMLWriter.java
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@ -10,7 +10,7 @@ import java.util.Set;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.UrlBuilder;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.UrlBuilder.ParamMap;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaborationComparator;
import edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaborationData;
import edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaboratorComparator;

4
src/edu/cornell/mannlib/vitro/webapp/visualization/coauthorship/CoAuthorshipRequestHandler.java
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@ -16,8 +16,8 @@ import com.hp.hpl.jena.query.Dataset;
import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaborationData;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaborator;

2
src/edu/cornell/mannlib/vitro/webapp/visualization/coauthorship/CoAuthorshipVisCodeGenerator.java
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@ -14,7 +14,7 @@ import java.util.Set;
import org.apache.commons.logging.Log;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VisConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaborator;

2
src/edu/cornell/mannlib/vitro/webapp/visualization/constants/QueryFieldLabels.java
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@ -27,6 +27,8 @@ public class QueryFieldLabels {
public static final String DOCUMENT_PUBLICATION_YEAR_USING_1_1_PROPERTY = "publicationYearOldLit";
public static final String DOCUMENT_PUBLICATION_YEAR_MONTH = "publicationYearMonthLit";
public static final String DOCUMENT_PUBLICATION_DATE = "publicationDateLit";
public static final String DOCUMENT_JOURNAL_LABEL = "journalLabelLit";
/*
* Image related field labels

4
src/edu/cornell/mannlib/vitro/webapp/visualization/coprincipalinvestigator/CoPIGrantCountRequestHandler.java
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@ -15,8 +15,8 @@ import com.hp.hpl.jena.rdf.model.Model;
import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaborationData;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaborator;

2
src/edu/cornell/mannlib/vitro/webapp/visualization/coprincipalinvestigator/CoPIGraphMLWriter.java
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@ -10,7 +10,7 @@ import java.util.Set;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.UrlBuilder;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.UrlBuilder.ParamMap;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaborationComparator;
import edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaborationData;
import edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaboratorComparator;

2
src/edu/cornell/mannlib/vitro/webapp/visualization/coprincipalinvestigator/CoPIVisCodeGenerator.java
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@ -14,7 +14,7 @@ import java.util.Set;
import org.apache.commons.logging.Log;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VisConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Collaborator;

6
src/edu/cornell/mannlib/vitro/webapp/visualization/entitycomparison/EntityPublicationCountRequestHandler.java
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@ -20,13 +20,13 @@ import com.hp.hpl.jena.rdf.model.Model;
import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Entity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.JsonObject;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubEntity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject;
import edu.cornell.mannlib.vitro.webapp.visualization.visutils.ModelConstructor;
import edu.cornell.mannlib.vitro.webapp.visualization.visutils.QueryRunner;
import edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions;

8
src/edu/cornell/mannlib/vitro/webapp/visualization/entitycomparison/cached/TemporalGrantVisualizationRequestHandler.java
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@ -19,17 +19,17 @@ import com.hp.hpl.jena.query.Dataset;
import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VisConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.entitycomparison.OrganizationUtilityFunctions;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Activity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Entity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.JsonObject;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubEntity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubjectEntityJSON;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.SubjectEntityJSON;
import edu.cornell.mannlib.vitro.webapp.visualization.visutils.SelectOnModelUtilities;
import edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions;
import edu.cornell.mannlib.vitro.webapp.visualization.visutils.VisualizationRequestHandler;

8
src/edu/cornell/mannlib/vitro/webapp/visualization/entitycomparison/cached/TemporalPublicationVisualizationRequestHandler.java
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@ -19,17 +19,17 @@ import com.hp.hpl.jena.query.Dataset;
import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VisConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.entitycomparison.OrganizationUtilityFunctions;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Activity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Entity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.JsonObject;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubEntity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubjectEntityJSON;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.SubjectEntityJSON;
import edu.cornell.mannlib.vitro.webapp.visualization.visutils.SelectOnModelUtilities;
import edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions;
import edu.cornell.mannlib.vitro.webapp.visualization.visutils.VisualizationRequestHandler;

6
src/edu/cornell/mannlib/vitro/webapp/visualization/entitygrantcount/EntityGrantCountRequestHandler.java
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@ -20,14 +20,14 @@ import com.hp.hpl.jena.rdf.model.Model;
import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.entitycomparison.OrganizationUtilityFunctions;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Entity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.JsonObject;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubEntity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject;
import edu.cornell.mannlib.vitro.webapp.visualization.visutils.ModelConstructor;
import edu.cornell.mannlib.vitro.webapp.visualization.visutils.QueryRunner;
import edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions;

81
src/edu/cornell/mannlib/vitro/webapp/visualization/mapofscience/MapOfScienceVisualizationRequestHandler.java
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@ -19,17 +19,19 @@ import com.hp.hpl.jena.query.Dataset;
import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VisConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.entitycomparison.OrganizationUtilityFunctions;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Activity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Entity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.JsonObject;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.MapOfScienceActivity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubEntity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubjectEntityJSON;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.JsonObject;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.MapOfScience;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json.SubjectEntityJSON;
import edu.cornell.mannlib.vitro.webapp.visualization.visutils.SelectOnModelUtilities;
import edu.cornell.mannlib.vitro.webapp.visualization.visutils.UtilityFunctions;
import edu.cornell.mannlib.vitro.webapp.visualization.visutils.VisualizationRequestHandler;
@ -265,7 +267,7 @@ public class MapOfScienceVisualizationRequestHandler implements
fileData.put(DataVisualizationController.FILE_CONTENT_TYPE_KEY,
"application/octet-stream");
fileData.put(DataVisualizationController.FILE_CONTENT_KEY,
writePublicationsOverTimeJSON(vitroRequest,
writeMapOfScienceDataJSON(vitroRequest,
entity));
return fileData;
}
@ -295,58 +297,53 @@ public class MapOfScienceVisualizationRequestHandler implements
* @param subentities
* @param subOrganizationTypesResult
*/
private String writePublicationsOverTimeJSON(VitroRequest vreq,
Entity subjectEntity) {
private String writeMapOfScienceDataJSON(VitroRequest vreq,
Entity subjectEntity) {
Gson json = new Gson();
Set subEntitiesJson = new HashSet();
Set jsonContent = new HashSet();
for (SubEntity subentity : subjectEntity.getSubEntities()) {
JsonObject entityJson = new JsonObject(
subentity.getIndividualLabel());
List<List<Integer>> yearPubCount = new ArrayList<List<Integer>>();
for (Map.Entry<String, Integer> pubEntry : UtilityFunctions
.getYearToActivityCount(subentity.getActivities())
.entrySet()) {
List<Integer> currentPubYear = new ArrayList<Integer>();
if (pubEntry.getKey().equals(VOConstants.DEFAULT_PUBLICATION_YEAR)) {
currentPubYear.add(-1);
} else {
currentPubYear.add(Integer.parseInt(pubEntry.getKey()));
}
currentPubYear.add(pubEntry.getValue());
yearPubCount.add(currentPubYear);
}
MapOfScience entityJson = new MapOfScience(subentity.getIndividualURI());
entityJson.setYearToActivityCount(yearPubCount);
entityJson.setOrganizationTypes(subentity.getEntityTypeLabels());
entityJson.setEntityURI(subentity.getIndividualURI());
entityJson.setLabel(subentity.getIndividualLabel());
entityJson.setLastCachedAtDateTime(subentity.getLastCachedAtDateTime());
if (subentity.getEntityClass().equals(VOConstants.EntityClassType.PERSON)) {
entityJson.setVisMode("PERSON");
entityJson.setType("PERSON");
} else if (subentity.getEntityClass().equals(VOConstants.EntityClassType.ORGANIZATION)) {
entityJson.setVisMode("ORGANIZATION");
entityJson.setType("ORGANIZATION");
}
subEntitiesJson.add(entityJson);
Map<String, Integer> journalToPublicationCount = new HashMap<String, Integer>();
int i = 0;
for (Activity activity : subentity.getActivities()) {
System.out.println(i);
System.out.println(activity.getActivityURI());
System.out.println("------");
String journalName = ((MapOfScienceActivity) activity).getPublishedInJournal().trim();
if (journalToPublicationCount.containsKey(journalName)) {
journalToPublicationCount.put(journalName,
journalToPublicationCount.get(journalName) + 1);
} else {
journalToPublicationCount.put(journalName, 1);
}
i++;
}
entityJson.setSubdisciplineActivity(journalToPublicationCount);
jsonContent.add(entityJson);
}
SubjectEntityJSON subjectEntityJSON = new SubjectEntityJSON(subjectEntity.getEntityLabel(),
subjectEntity.getEntityURI(),
subjectEntity.getParents());
subEntitiesJson.add(subjectEntityJSON);
return json.toJson(subEntitiesJson);
return json.toJson(jsonContent);
}
private String getEntityPublicationsPerYearCSVContent(Entity entity) {

7
src/edu/cornell/mannlib/vitro/webapp/visualization/modelconstructor/OrganizationToPublicationsForSubOrganizationsModelConstructor.java
View file

@ -47,6 +47,8 @@ public class OrganizationToPublicationsForSubOrganizationsModelConstructor imple
+ " ?Document rdfs:label ?DocumentLabel . "
+ " ?Document core:dateTimeValue ?dateTimeValue . "
+ " ?dateTimeValue core:dateTime ?publicationDate . "
+ " ?Document core:hasPublicationVenue ?journal ."
+ " ?journal rdfs:label ?journalLabel . "
+ " } "
+ " WHERE { "
+ " <" + organizationURI + "> rdfs:label ?organizationLabel . "
@ -62,6 +64,11 @@ public class OrganizationToPublicationsForSubOrganizationsModelConstructor imple
+ " ?dateTimeValue core:dateTime ?publicationDate . "
+ " } "
+ " "
+ " OPTIONAL { "
+ " ?Document core:hasPublicationVenue ?journal ."
+ " ?journal rdfs:label ?journalLabel . "
+ " } "
+ " "
+ " LET(?now := afn:now()) "
+ " } ";

7
src/edu/cornell/mannlib/vitro/webapp/visualization/modelconstructor/PeopleToPublicationsModelConstructor.java
View file

@ -43,6 +43,8 @@ public class PeopleToPublicationsModelConstructor implements ModelConstructor {
+ " ?Document rdfs:label ?DocumentLabel . "
+ " ?Document core:dateTimeValue ?dateTimeValue . "
+ " ?dateTimeValue core:dateTime ?publicationDate . "
+ " ?Document core:hasPublicationVenue ?journal ."
+ " ?journal rdfs:label ?journalLabel . "
+ " } "
+ " WHERE { "
+ " ?person core:authorInAuthorship ?Resource . "
@ -54,6 +56,11 @@ public class PeopleToPublicationsModelConstructor implements ModelConstructor {
+ " ?dateTimeValue core:dateTime ?publicationDate . "
+ " } "
+ " "
+ " OPTIONAL { "
+ " ?Document core:hasPublicationVenue ?journal ."
+ " ?journal rdfs:label ?journalLabel . "
+ " } "
+ " "
+ " LET(?now := afn:now()) "
+ " } ";
}

7
src/edu/cornell/mannlib/vitro/webapp/visualization/modelconstructor/PersonToPublicationsModelConstructor.java
View file

@ -46,6 +46,8 @@ public class PersonToPublicationsModelConstructor implements ModelConstructor {
+ " ?Document rdfs:label ?DocumentLabel . "
+ " ?Document core:dateTimeValue ?dateTimeValue . "
+ " ?dateTimeValue core:dateTime ?publicationDate . "
+ " ?Document core:hasPublicationVenue ?journal ."
+ " ?journal rdfs:label ?journalLabel . "
+ " } "
+ " WHERE { "
+ " <" + personURI + "> core:authorInAuthorship ?Resource . "
@ -57,6 +59,11 @@ public class PersonToPublicationsModelConstructor implements ModelConstructor {
+ " ?dateTimeValue core:dateTime ?publicationDate . "
+ " } "
+ " "
+ " OPTIONAL { "
+ " ?Document core:hasPublicationVenue ?journal ."
+ " ?journal rdfs:label ?journalLabel . "
+ " } "
+ " "
+ " LET(?now := afn:now()) "
+ " } ";
}

4
src/edu/cornell/mannlib/vitro/webapp/visualization/persongrantcount/PersonGrantCountRequestHandler.java
View file

@ -16,8 +16,8 @@ import com.hp.hpl.jena.query.Dataset;
import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Activity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Individual;

2
src/edu/cornell/mannlib/vitro/webapp/visualization/persongrantcount/PersonGrantCountVisCodeGenerator.java
View file

@ -13,7 +13,7 @@ import java.util.Set;
import org.apache.commons.logging.Log;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VisConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData;

2
src/edu/cornell/mannlib/vitro/webapp/visualization/personlevel/PersonLevelRequestHandler.java
View file

@ -15,7 +15,7 @@ import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.UrlBuilder;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.coauthorship.CoAuthorshipQueryRunner;
import edu.cornell.mannlib.vitro.webapp.visualization.coauthorship.CoAuthorshipVisCodeGenerator;
import edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaborationData;

4
src/edu/cornell/mannlib/vitro/webapp/visualization/personpubcount/PersonPublicationCountRequestHandler.java
View file

@ -16,8 +16,8 @@ import com.hp.hpl.jena.query.Dataset;
import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.DataVisualizationController;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Activity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Individual;

2
src/edu/cornell/mannlib/vitro/webapp/visualization/personpubcount/PersonPublicationCountVisCodeGenerator.java
View file

@ -13,7 +13,7 @@ import java.util.Set;
import org.apache.commons.logging.Log;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VisConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SparklineData;

2
src/edu/cornell/mannlib/vitro/webapp/visualization/utilities/UtilitiesRequestHandler.java
View file

@ -22,7 +22,7 @@ import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.UrlBuilder;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.UrlBuilder.ParamMap;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.filestorage.FileServingHelper;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.QueryFieldLabels;
import edu.cornell.mannlib.vitro.webapp.visualization.exceptions.MalformedQueryParametersException;

19
src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/MapOfScienceActivity.java Normal file
View file

@ -0,0 +1,19 @@
package edu.cornell.mannlib.vitro.webapp.visualization.valueobjects;
public class MapOfScienceActivity extends Activity {
private String publishedInJournal = "NONE";
public MapOfScienceActivity(String activityURI) {
super(activityURI);
}
public void setPublishedInJournal(String publishedInJournal) {
this.publishedInJournal = publishedInJournal;
}
public String getPublishedInJournal() {
return publishedInJournal;
}
}

2
src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/JsonObject.java → src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/json/JsonObject.java
View file

@ -1,5 +1,5 @@
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
package edu.cornell.mannlib.vitro.webapp.visualization.valueobjects;
package edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json;
import java.util.ArrayList;
import java.util.List;

66
src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/json/MapOfScience.java Normal file
View file

@ -0,0 +1,66 @@
package edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json;
import java.util.HashMap;
import java.util.Map;
public class MapOfScience {
private String uri;
private String label;
private String type;
private int pubsMapped;
private int pubsUnmapped;
private String lastCachedAtDateTime;
private Map<String, Integer> subdisciplineActivity = new HashMap<String, Integer>();
public MapOfScience(String uri) {
this.uri = uri;
}
public void setType(String type) {
this.type = type;
}
public String getType() {
return type;
}
public void setUri(String uri) {
this.uri = uri;
}
public String getUri() {
return uri;
}
public void setLabel(String label) {
this.label = label;
}
public String getLabel() {
return label;
}
public void setPubsMapped(int pubsMapped) {
this.pubsMapped = pubsMapped;
}
public int getPubsMapped() {
return pubsMapped;
}
public void setPubsUnmapped(int pubsUnmapped) {
this.pubsUnmapped = pubsUnmapped;
}
public int getPubsUnmapped() {
return pubsUnmapped;
}
public void setSubdisciplineActivity(Map<String, Integer> subdisciplineActivity) {
this.subdisciplineActivity = subdisciplineActivity;
}
public Map<String, Integer> getSubdisciplineActivity() {
return subdisciplineActivity;
}
public void setLastCachedAtDateTime(String lastCachedAtDateTime) {
this.lastCachedAtDateTime = lastCachedAtDateTime;
}
public String getLastCachedAtDateTime() {
return lastCachedAtDateTime;
}
}

4
src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/SubjectEntityJSON.java → src/edu/cornell/mannlib/vitro/webapp/visualization/valueobjects/json/SubjectEntityJSON.java
View file

@ -1,10 +1,12 @@
/* $This file is distributed under the terms of the license in /doc/license.txt$ */
package edu.cornell.mannlib.vitro.webapp.visualization.valueobjects;
package edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.json;
import java.util.HashMap;
import java.util.Map;
import java.util.Set;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Individual;
public class SubjectEntityJSON {
private String subjectEntityLabel;

153
src/edu/cornell/mannlib/vitro/webapp/visualization/visutils/SelectOnModelUtilities.java
View file

@ -29,6 +29,7 @@ import edu.cornell.mannlib.vitro.webapp.visualization.modelconstructor.SubOrgani
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Activity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Entity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.Individual;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.MapOfScienceActivity;
import edu.cornell.mannlib.vitro.webapp.visualization.valueobjects.SubEntity;
public class SelectOnModelUtilities {
@ -317,6 +318,58 @@ public class SelectOnModelUtilities {
return allDocumentURIToVOs;
}
public static Map<String, Activity> getPublicationsWithJournalForAllSubOrganizations(
Dataset dataset, Entity organizationEntity)
throws MalformedQueryParametersException {
Map<String, Activity> allDocumentURIToVOs = new HashMap<String, Activity>();
for (SubEntity subOrganization : organizationEntity.getSubEntities()) {
Model subOrganizationPublicationsModel = ModelConstructorUtilities
.getOrConstructModel(
subOrganization.getIndividualURI(),
OrganizationToPublicationsForSubOrganizationsModelConstructor.MODEL_TYPE,
dataset);
// System.out.println("getting publications for " + subOrganization.getIndividualLabel());
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
fieldLabelToOutputFieldLabel.put("document", QueryFieldLabels.DOCUMENT_URL);
fieldLabelToOutputFieldLabel.put("documentLabel", QueryFieldLabels.DOCUMENT_LABEL);
fieldLabelToOutputFieldLabel.put("documentPublicationDate", QueryFieldLabels.DOCUMENT_PUBLICATION_DATE);
fieldLabelToOutputFieldLabel.put("journalLabel", QueryFieldLabels.DOCUMENT_JOURNAL_LABEL);
String whereClause = ""
+ " <" + subOrganization.getIndividualURI() + "> vivosocnet:hasPersonWithPublication ?document . "
+ " ?document rdfs:label ?documentLabel . "
+ " OPTIONAL { "
+ " ?document core:dateTimeValue ?dateTimeValue . "
+ " ?dateTimeValue core:dateTime ?documentPublicationDate } . "
+ " OPTIONAL { "
+ " ?document core:hasPublicationVenue ?journal . "
+ " ?journal rdfs:label ?journalLabel . } ";
QueryRunner<ResultSet> subOrganizationPublicationsQuery =
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
"",
whereClause,
"",
subOrganizationPublicationsModel);
getPublicationWithJournalForEntity(subOrganizationPublicationsQuery.getQueryResult(),
subOrganization,
allDocumentURIToVOs);
String lastCachedAtForEntity = getLastCachedAtDateTimeForEntityInModel(
subOrganization,
subOrganizationPublicationsModel);
subOrganization.setLastCachedAtDateTime(lastCachedAtForEntity);
}
return allDocumentURIToVOs;
}
private static void getPublicationForEntity(
ResultSet queryResult,
SubEntity subEntity, Map<String, Activity> allDocumentURIToVOs) {
@ -357,6 +410,54 @@ public class SelectOnModelUtilities {
subEntity.addActivities(currentEntityPublications);
}
private static void getPublicationWithJournalForEntity(
ResultSet queryResult,
SubEntity subEntity,
Map<String, Activity> allDocumentURIToVOs) {
Set<Activity> currentEntityPublications = new HashSet<Activity>();
while (queryResult.hasNext()) {
QuerySolution solution = queryResult.nextSolution();
if (StringUtils.isEmpty(subEntity.getLastCachedAtDateTime())) {
RDFNode lastCachedAtNode = solution.get(QueryFieldLabels.LAST_CACHED_AT_DATETIME);
if (lastCachedAtNode != null) {
subEntity.setLastCachedAtDateTime(lastCachedAtNode.toString());
}
}
RDFNode documentNode = solution.get(QueryFieldLabels.DOCUMENT_URL);
Activity biboDocument;
if (allDocumentURIToVOs.containsKey(documentNode.toString())) {
biboDocument = allDocumentURIToVOs.get(documentNode.toString());
} else {
biboDocument = new MapOfScienceActivity(documentNode.toString());
allDocumentURIToVOs.put(documentNode.toString(), biboDocument);
RDFNode publicationDateNode = solution.get(QueryFieldLabels
.DOCUMENT_PUBLICATION_DATE);
if (publicationDateNode != null) {
biboDocument.setActivityDate(publicationDateNode.toString());
}
RDFNode publicationJournalNode = solution.get(QueryFieldLabels
.DOCUMENT_JOURNAL_LABEL);
if (publicationJournalNode != null) {
((MapOfScienceActivity) biboDocument).setPublishedInJournal(publicationJournalNode.toString());
}
}
currentEntityPublications.add(biboDocument);
}
subEntity.addActivities(currentEntityPublications);
}
public static String getLastCachedAtForEntity(ResultSet queryResult) {
String lastCachedAtDateTime = null;
@ -638,5 +739,57 @@ public class SelectOnModelUtilities {
}
return allDocumentURIToVOs;
}
public static Map<String, Activity> getPublicationsWithJournalForAssociatedPeople(
Dataset dataset, Collection<SubEntity> people)
throws MalformedQueryParametersException {
Map<String, Activity> allDocumentURIToVOs = new HashMap<String, Activity>();
Model peoplePublicationsModel = ModelConstructorUtilities
.getOrConstructModel(
null,
PeopleToPublicationsModelConstructor.MODEL_TYPE,
dataset);
for (SubEntity person : people) {
// System.out.println("getting publications for " + person.getIndividualLabel());
Map<String, String> fieldLabelToOutputFieldLabel = new HashMap<String, String>();
fieldLabelToOutputFieldLabel.put("document", QueryFieldLabels.DOCUMENT_URL);
fieldLabelToOutputFieldLabel.put("documentLabel", QueryFieldLabels.DOCUMENT_LABEL);
fieldLabelToOutputFieldLabel.put("documentPublicationDate", QueryFieldLabels.DOCUMENT_PUBLICATION_DATE);
fieldLabelToOutputFieldLabel.put("journalLabel", QueryFieldLabels.DOCUMENT_JOURNAL_LABEL);
String whereClause = ""
+ " <" + person.getIndividualURI() + "> vivosocnet:hasPublication ?document . "
+ " ?document rdfs:label ?documentLabel . "
+ " OPTIONAL { "
+ " ?document core:dateTimeValue ?dateTimeValue . "
+ " ?dateTimeValue core:dateTime ?documentPublicationDate } . "
+ " OPTIONAL { "
+ " ?document core:hasPublicationVenue ?journal . "
+ " ?journal rdfs:label ?journalLabel . } ";
QueryRunner<ResultSet> personPublicationsQuery =
new GenericQueryRunnerOnModel(fieldLabelToOutputFieldLabel,
"",
whereClause,
"",
peoplePublicationsModel);
getPublicationWithJournalForEntity(personPublicationsQuery.getQueryResult(),
person,
allDocumentURIToVOs);
String lastCachedAtForEntity = getLastCachedAtDateTimeForEntityInModel(
person,
peoplePublicationsModel);
person.setLastCachedAtDateTime(lastCachedAtForEntity);
}
return allDocumentURIToVOs;
}
}

2
src/edu/cornell/mannlib/vitro/webapp/visualization/visutils/UtilityFunctions.java
View file

@ -24,7 +24,7 @@ import edu.cornell.mannlib.vitro.webapp.controller.freemarker.UrlBuilder;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.UrlBuilder.ParamMap;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.collaborationutils.CollaborationData;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VOConstants;
import edu.cornell.mannlib.vitro.webapp.visualization.constants.VisConstants;

2
src/edu/cornell/mannlib/vitro/webapp/web/templatemodels/individual/IndividualTemplateModel.java
View file

@ -19,7 +19,7 @@ import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.UrlBuilder;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.UrlBuilder.ParamMap;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.UrlBuilder.Route;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.VisualizationFrameworkConstants;
import edu.cornell.mannlib.vitro.webapp.dao.WebappDaoFactory;
public class IndividualTemplateModel extends BaseIndividualTemplateModel {