diff --git a/model/init-data/initialSiteConfig.rdf b/modifications/WEB-INF/init-data/initialSiteConfig.rdf
similarity index 100%
rename from model/init-data/initialSiteConfig.rdf
rename to modifications/WEB-INF/init-data/initialSiteConfig.rdf
diff --git a/ontology/geopolitical-annotations.rdf b/modifications/WEB-INF/ontologies/user/geopolitical-annotations.rdf
similarity index 100%
rename from ontology/geopolitical-annotations.rdf
rename to modifications/WEB-INF/ontologies/user/geopolitical-annotations.rdf
diff --git a/ontology/geopolitical.flags.rdf b/modifications/WEB-INF/ontologies/user/geopolitical.flags.rdf
similarity index 100%
rename from ontology/geopolitical.flags.rdf
rename to modifications/WEB-INF/ontologies/user/geopolitical.flags.rdf
diff --git a/ontology/geopolitical.labels.rdf b/modifications/WEB-INF/ontologies/user/geopolitical.labels.rdf
similarity index 100%
rename from ontology/geopolitical.labels.rdf
rename to modifications/WEB-INF/ontologies/user/geopolitical.labels.rdf
diff --git a/ontology/groups.rdf b/modifications/WEB-INF/ontologies/user/groups.rdf
similarity index 100%
rename from ontology/groups.rdf
rename to modifications/WEB-INF/ontologies/user/groups.rdf
diff --git a/ontology/position.rdf b/modifications/WEB-INF/ontologies/user/position.rdf
similarity index 100%
rename from ontology/position.rdf
rename to modifications/WEB-INF/ontologies/user/position.rdf
diff --git a/ontology/vivo-core-0.9-annotations.rdf b/modifications/WEB-INF/ontologies/user/vivo-core-0.9-annotations.rdf
similarity index 100%
rename from ontology/vivo-core-0.9-annotations.rdf
rename to modifications/WEB-INF/ontologies/user/vivo-core-0.9-annotations.rdf
diff --git a/model/submodels/geo2vivo.n3 b/modifications/WEB-INF/submodels/geo2vivo.n3
similarity index 100%
rename from model/submodels/geo2vivo.n3
rename to modifications/WEB-INF/submodels/geo2vivo.n3
diff --git a/model/submodels/geopolitical.owl.rdf b/modifications/WEB-INF/submodels/geopolitical.owl.rdf
similarity index 100%
rename from model/submodels/geopolitical.owl.rdf
rename to modifications/WEB-INF/submodels/geopolitical.owl.rdf
diff --git a/model/submodels/vivo-core-0.9.owl b/modifications/WEB-INF/submodels/vivo-core-0.9.owl
similarity index 100%
rename from model/submodels/vivo-core-0.9.owl
rename to modifications/WEB-INF/submodels/vivo-core-0.9.owl