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1. Complete fix for the short-url for visualization feature.

Browse source 
2. Refactored vis related code to make use of rebecca's isURIUsingDefaultNamespace function.
This commit is contained in:
cdtank 2011-04-29 22:30:21 +00:00
parent 87581aeefe
commit 692a94b44a
15 changed files with 116 additions and 92 deletions
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2
productMods/js/visualization/entitycomparison/util.js
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@ -763,7 +763,7 @@ function getVIVOURL(entityURI){
function getTemporalVisURL(entityURI) {
return temporalGraphCommonURL + "&uri=" + entityURI ;
return temporalGraphCommonURL + "?uri=" + entityURI ;
}
function getVIVOProfileURL(given_uri) {

8
productMods/templates/freemarker/visualization/entitycomparison/entityComparisonErrorCommonBody.ftl
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@ -1,9 +1,15 @@
<#-- $This file is distributed under the terms of the license in /doc/license.txt$ -->
<#assign standardVisualizationURLRoot ="/visualization">
<#assign shortVisualizationURLRoot ="/vis">
<#assign organizationVivoProfileURL = "${urls.base}/individual?uri=${organizationURI}">
<#assign temporalGraphURL = '${urls.base}${standardVisualizationURLRoot}?vis=${otherVisType}&uri=${organizationURI}&labelField=label'>
<#if organizationLocalName?has_content >
<#assign temporalGraphURL = '${urls.base}${shortVisualizationURLRoot}/${otherVisType}/${organizationLocalName}'>
<#else>
<#assign temporalGraphURL = '${urls.base}${shortVisualizationURLRoot}/${otherVisType}/?uri=${organizationURI}'>
</#if>
<div id="error-container">

21
productMods/templates/freemarker/visualization/entitycomparison/entityComparisonSetup.ftl
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@ -3,19 +3,30 @@
<#assign standardVisualizationURLRoot ="/visualization">
<#assign ajaxVisualizationURLRoot ="/visualizationAjax">
<#assign dataVisualizationURLRoot ="/visualizationData">
<#assign shortVisualizationURLRoot ="/vis">
<#assign organizationURI ="${organizationURI?url}">
<#assign organizationVivoProfileURL = "${urls.base}/individual?uri=${organizationURI}">
<#assign subOrganizationVivoProfileURL = "${urls.base}/individual?">
<#assign subOrganizationGrantTemporalGraphCommonURL = "${urls.base}${standardVisualizationURLRoot}?vis=entity_grant_count">
<#assign subOrganizationPublicationTemporalGraphCommonURL = "${urls.base}${standardVisualizationURLRoot}?vis=entity_comparison">
<#assign subOrganizationGrantTemporalGraphCommonURL = "${urls.base}${shortVisualizationURLRoot}/grant-graph/">
<#assign subOrganizationPublicationTemporalGraphCommonURL = "${urls.base}${shortVisualizationURLRoot}/publication-graph/">
<#if organizationLocalName?has_content >
<#assign organizationPublicationTemporalGraphURL = '${urls.base}${shortVisualizationURLRoot}/publication-graph/${organizationLocalName}'>
<#assign organizationGrantTemporalGraphURL = "${urls.base}${shortVisualizationURLRoot}/grant-graph/${organizationLocalName}">
<#else>
<#assign organizationPublicationTemporalGraphURL = '${urls.base}${shortVisualizationURLRoot}/publication-graph/?uri=${organizationURI}'>
<#assign organizationGrantTemporalGraphURL = "${urls.base}${shortVisualizationURLRoot}/grant-graph/?uri=${organizationURI}">
</#if>
<#assign organizationPublicationTemporalGraphURL = "${urls.base}${standardVisualizationURLRoot}?vis=entity_comparison&uri=${organizationURI}">
<#assign organizationPublicationTemporalGraphDataURL = "${urls.base}${dataVisualizationURLRoot}?vis=entity_comparison&uri=${organizationURI}&vis_mode=json">
<#assign organizationGrantTemporalGraphURL = "${urls.base}${standardVisualizationURLRoot}?vis=entity_grant_count&uri=${organizationURI}">
<#assign organizationGrantTemporalGraphDataURL = "${urls.base}${dataVisualizationURLRoot}?vis=entity_grant_count&uri=${organizationURI}&vis_mode=json">
<#assign temporalGraphSmallIcon = '${urls.images}/visualization/temporal_vis_small_icon.jpg'>

2
productMods/templates/freemarker/visualization/entitycomparison/entityGrantComparisonError.ftl
View file

@ -1,6 +1,6 @@
<#-- $This file is distributed under the terms of the license in /doc/license.txt$ -->
<#assign otherVisType = "entity_comparison">
<#assign otherVisType = "publication-graph">
<#assign textForOtherEntityComparisonType = "publications">
<#assign textForCurrentEntityComparisonType = "grants">

2
productMods/templates/freemarker/visualization/entitycomparison/entityPublicationComparisonError.ftl
View file

@ -1,6 +1,6 @@
<#-- $This file is distributed under the terms of the license in /doc/license.txt$ -->
<#assign otherVisType = "entity_grant_count">
<#assign otherVisType = "grant-graph">
<#assign textForOtherEntityComparisonType = "grants">
<#assign textForCurrentEntityComparisonType = "publications">

12
productMods/templates/freemarker/visualization/personlevel/coAuthorPersonLevel.ftl
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@ -8,7 +8,17 @@
<#assign egoURI ="${egoURIParam?url}">
<#assign egoCoAuthorshipDataFeederURL = '${urls.base}${dataVisualizationURLRoot}?vis=coauthorship&uri=${egoURI}&vis_mode=coauthor_network_stream&labelField=label'>
<#assign coprincipalinvestigatorURL = '${urls.base}${shortVisualizationURLRoot}/investigator-network/?uri=${egoURI}'>
<#if egoLocalName?has_content >
<#assign coprincipalinvestigatorURL = '${urls.base}${shortVisualizationURLRoot}/investigator-network/${egoLocalName}'>
<#else>
<#assign coprincipalinvestigatorURL = '${urls.base}${shortVisualizationURLRoot}/investigator-network/?uri=${egoURI}'>
</#if>
<#assign egoCoAuthorsListDataFileURL = '${urls.base}${dataVisualizationURLRoot}?vis=coauthorship&uri=${egoURI}&vis_mode=coauthors'>
<#assign egoCoAuthorshipNetworkDataFileURL = '${urls.base}${dataVisualizationURLRoot}?vis=coauthorship&uri=${egoURI}&vis_mode=coauthor_network_download'>

10
productMods/templates/freemarker/visualization/personlevel/coPIPersonLevel.ftl
View file

@ -10,6 +10,16 @@
<#assign coauthorshipURL = '${urls.base}${shortVisualizationURLRoot}/author-network/?uri=${egoURI}'>
<#if egoLocalName?has_content >
<#assign coauthorshipURL = '${urls.base}${shortVisualizationURLRoot}/author-network/${egoLocalName}'>
<#else>
<#assign coauthorshipURL = '${urls.base}${shortVisualizationURLRoot}/author-network/?uri=${egoURI}'>
</#if>
<#assign egoCoInvestigatorsListDataFileURL = '${urls.base}${dataVisualizationURLRoot}?vis=coprincipalinvestigator&uri=${egoURI}&vis_mode=copis'>
<#assign egoCoInvestigationNetworkDataFileURL = '${urls.base}${dataVisualizationURLRoot}?vis=coprincipalinvestigator&uri=${egoURI}&vis_mode=copi_network_download'>

1
src/edu/cornell/mannlib/vitro/webapp/visualization/freemarker/entitycomparison/EntityPublicationCountRequestHandler.java
View file

@ -261,6 +261,7 @@ public class EntityPublicationCountRequestHandler implements
body.put("portalBean", portal);
body.put("title", organizationLabel + " - Temporal Graph Visualization");
body.put("organizationURI", entityURI);
body.put("organizationLocalName", UtilityFunctions.getIndividualLocalName(entityURI, vreq));
body.put("organizationLabel", organizationLabel);
return new TemplateResponseValues(standaloneTemplate, body);

1
src/edu/cornell/mannlib/vitro/webapp/visualization/freemarker/entitycomparison/cached/TemporalGrantVisualizationRequestHandler.java
View file

@ -292,6 +292,7 @@ public class TemporalGrantVisualizationRequestHandler implements
body.put("portalBean", portal);
body.put("title", organizationLabel + " - Temporal Graph Visualization");
body.put("organizationURI", entityURI);
body.put("organizationLocalName", UtilityFunctions.getIndividualLocalName(entityURI, vreq));
body.put("organizationLabel", organizationLabel);
return new TemplateResponseValues(standaloneTemplate, body);

1
src/edu/cornell/mannlib/vitro/webapp/visualization/freemarker/entitycomparison/cached/TemporalPublicationVisualizationRequestHandler.java
View file

@ -284,6 +284,7 @@ public class TemporalPublicationVisualizationRequestHandler implements
body.put("portalBean", portal);
body.put("title", organizationLabel + " - Temporal Graph Visualization");
body.put("organizationURI", entityURI);
body.put("organizationLocalName", UtilityFunctions.getIndividualLocalName(entityURI, vreq));
body.put("organizationLabel", organizationLabel);
return new TemplateResponseValues(standaloneTemplate, body);

1
src/edu/cornell/mannlib/vitro/webapp/visualization/freemarker/entitygrantcount/EntityGrantCountRequestHandler.java
View file

@ -259,6 +259,7 @@ public class EntityGrantCountRequestHandler implements
body.put("portalBean", portal);
body.put("title", organizationLabel + " - Temporal Graph Visualization");
body.put("organizationURI", entityURI);
body.put("organizationLocalName", UtilityFunctions.getIndividualLocalName(entityURI, vreq));
body.put("organizationLabel", organizationLabel);
return new TemplateResponseValues(standaloneTemplate, body);

5
src/edu/cornell/mannlib/vitro/webapp/visualization/freemarker/personlevel/PersonLevelRequestHandler.java
View file

@ -13,6 +13,7 @@ import com.hp.hpl.jena.rdf.model.Model;
import edu.cornell.mannlib.vitro.webapp.beans.Portal;
import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.UrlBuilder;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.ResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.responsevalues.TemplateResponseValues;
import edu.cornell.mannlib.vitro.webapp.controller.visualization.freemarker.VisualizationFrameworkConstants;
@ -234,6 +235,8 @@ public class PersonLevelRequestHandler implements VisualizationRequestHandler {
body.put("egoURIParam", egoURI);
body.put("egoLocalName", UtilityFunctions.getIndividualLocalName(egoURI, vitroRequest));
String title = "";
if (coAuthorshipVO.getCollaborators() != null
@ -270,6 +273,8 @@ public class PersonLevelRequestHandler implements VisualizationRequestHandler {
body.put("egoURIParam", egoURI);
body.put("egoLocalName", UtilityFunctions.getIndividualLocalName(egoURI, vitroRequest));
String title = "";
if (coPIVO.getCollaborators() != null && coPIVO.getCollaborators().size() > 0) {

93
src/edu/cornell/mannlib/vitro/webapp/visualization/freemarker/utilities/UtilitiesRequestHandler.java
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@ -7,8 +7,6 @@ import java.util.Map;
import org.apache.commons.lang.StringUtils;
import org.apache.commons.logging.Log;
import org.openrdf.model.URI;
import org.openrdf.model.impl.URIImpl;
import com.google.gson.Gson;
import com.hp.hpl.jena.iri.IRI;
@ -19,7 +17,6 @@ import com.hp.hpl.jena.query.QuerySolution;
import com.hp.hpl.jena.query.ResultSet;
import com.hp.hpl.jena.rdf.model.RDFNode;
import edu.cornell.mannlib.vitro.webapp.beans.Individual;
import edu.cornell.mannlib.vitro.webapp.config.ConfigurationProperties;
import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.UrlBuilder;
@ -33,6 +30,7 @@ import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.valueobjects.Ge
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.AllPropertiesQueryRunner;
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.GenericQueryRunner;
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.QueryRunner;
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.UtilityFunctions;
import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.VisualizationRequestHandler;
/**
@ -47,24 +45,6 @@ import edu.cornell.mannlib.vitro.webapp.visualization.freemarker.visutils.Visual
*/
public class UtilitiesRequestHandler implements VisualizationRequestHandler {
/**
* TODO: Remove this method once Rebecca creates one. Right now it is the exact copy of the method found in
* BaseIndividualTemplateModel.getRdfUrl
* @return
*/
private boolean isIndividualURIBasedOnDefaultNamespace(String givenURI, VitroRequest vitroRequest) {
URI uri = new URIImpl(givenURI);
String namespace = uri.getNamespace();
// Individuals in the default namespace
// e.g., http://vivo.cornell.edu/individual/n2345/n2345.rdf
// where default namespace = http://vivo.cornell.edu/individual/
// Other individuals: http://some.other.namespace/n2345?format=rdfxml
String defaultNamespace = vitroRequest.getWebappDaoFactory().getDefaultNamespace();
return (defaultNamespace.equals(namespace)) ? true : false;
}
public Object generateAjaxVisualization(VitroRequest vitroRequest,
Log log,
Dataset dataset)
@ -193,23 +173,19 @@ public class UtilitiesRequestHandler implements VisualizationRequestHandler {
.equalsIgnoreCase(visMode)) {
if (isIndividualURIBasedOnDefaultNamespace(individualURI, vitroRequest)) {
try {
Individual individual = vitroRequest.getWebappDaoFactory().getIndividualDao().getIndividualByURI(individualURI);
String individualLocalName = UtilityFunctions.getIndividualLocalName(
individualURI,
vitroRequest);
return UrlBuilder.getUrl(VisualizationFrameworkConstants.SHORT_URL_VISUALIZATION_REQUEST_PREFIX)
+ "/" + VisualizationFrameworkConstants.COAUTHORSHIP_VIS_SHORT_URL
+ "/" + individual.getLocalName();
} catch(Exception e) {
/*
* In case of exception dont do anything let it create long form urls.
* */
}
}
if (StringUtils.isNotBlank(individualLocalName)) {
return UrlBuilder.getUrl(VisualizationFrameworkConstants.SHORT_URL_VISUALIZATION_REQUEST_PREFIX)
+ "/" + VisualizationFrameworkConstants.COAUTHORSHIP_VIS_SHORT_URL
+ "/" + individualLocalName;
}
ParamMap coAuthorProfileURLParams = new ParamMap(
VisualizationFrameworkConstants.INDIVIDUAL_URI_KEY,
individualURI,
@ -226,21 +202,16 @@ public class UtilitiesRequestHandler implements VisualizationRequestHandler {
.equalsIgnoreCase(visMode)) {
if (isIndividualURIBasedOnDefaultNamespace(individualURI, vitroRequest)) {
try {
Individual individual = vitroRequest.getWebappDaoFactory().getIndividualDao().getIndividualByURI(individualURI);
String individualLocalName = UtilityFunctions.getIndividualLocalName(
individualURI,
vitroRequest);
return UrlBuilder.getUrl(VisualizationFrameworkConstants.SHORT_URL_VISUALIZATION_REQUEST_PREFIX)
+ "/" + VisualizationFrameworkConstants.COINVESTIGATOR_VIS_SHORT_URL
+ "/" + individual.getLocalName();
} catch(Exception e) {
/*
* In case of exception dont do anything let it create long form urls.
* */
}
if (StringUtils.isNotBlank(individualLocalName)) {
return UrlBuilder.getUrl(VisualizationFrameworkConstants.SHORT_URL_VISUALIZATION_REQUEST_PREFIX)
+ "/" + VisualizationFrameworkConstants.COINVESTIGATOR_VIS_SHORT_URL
+ "/" + individualLocalName;
}
/*
@ -376,21 +347,15 @@ public class UtilitiesRequestHandler implements VisualizationRequestHandler {
queryResult.addEntry(fieldLabelToOutputFieldLabel.get("organization"),
organizationNode.toString());
if (isIndividualURIBasedOnDefaultNamespace(organizationNode.toString(), vitroRequest)) {
String individualLocalName = UtilityFunctions.getIndividualLocalName(
organizationNode.toString(),
vitroRequest);
if (StringUtils.isNotBlank(individualLocalName)) {
try {
Individual individual = vitroRequest.getWebappDaoFactory().getIndividualDao().getIndividualByURI(organizationNode.toString());
return UrlBuilder.getUrl(VisualizationFrameworkConstants.SHORT_URL_VISUALIZATION_REQUEST_PREFIX)
+ "/" + VisualizationFrameworkConstants.PUBLICATION_TEMPORAL_VIS_SHORT_URL
+ "/" + individual.getLocalName();
} catch(Exception e) {
/*
* In case of exception dont do anything let it create long form urls.
* */
}
return UrlBuilder.getUrl(VisualizationFrameworkConstants.SHORT_URL_VISUALIZATION_REQUEST_PREFIX)
+ "/" + VisualizationFrameworkConstants.PUBLICATION_TEMPORAL_VIS_SHORT_URL
+ "/" + individualLocalName;
}
ParamMap highestLevelOrganizationTemporalGraphVisURLParams = new ParamMap(

28
src/edu/cornell/mannlib/vitro/webapp/visualization/freemarker/visutils/UtilityFunctions.java
View file

@ -18,6 +18,7 @@ import org.joda.time.format.DateTimeFormatter;
import com.google.gson.Gson;
import edu.cornell.mannlib.vitro.webapp.beans.Individual;
import edu.cornell.mannlib.vitro.webapp.beans.Portal;
import edu.cornell.mannlib.vitro.webapp.controller.VitroRequest;
import edu.cornell.mannlib.vitro.webapp.controller.freemarker.UrlBuilder;
@ -260,5 +261,32 @@ public class UtilityFunctions {
.getIndividualByURI(subentity.getIndividualURI())
.isVClass("http://xmlns.com/foaf/0.1/Person");
}
/**
*
* This method will test whether the current uri is based off of default namespace. If so,
* go ahead & provide local name.
* @param givenURI
* @param vitroRequest
* @return
*/
public static String getIndividualLocalName(String givenURI, VitroRequest vitroRequest) {
if (UrlBuilder.isUriInDefaultNamespace(givenURI, vitroRequest)) {
try {
Individual individual = vitroRequest.getWebappDaoFactory().getIndividualDao()
.getIndividualByURI(givenURI);
return individual.getLocalName();
} catch (Exception e) {
}
}
return "";
}
}

21
src/edu/cornell/mannlib/vitro/webapp/web/templatemodels/individual/IndividualTemplateModel.java
View file

@ -52,23 +52,6 @@ public class IndividualTemplateModel extends BaseIndividualTemplateModel {
return getVisUrl(coauthorVisURL);
}
/**
* TODO: Remove this method once Rebecca creates one. Right now it is the exact copy of the method found in
* BaseIndividualTemplateModel.getRdfUrl
* @return
*/
private boolean isIndividualURIBasedOnDefaultNamespace() {
URI uri = new URIImpl(getUri());
String namespace = uri.getNamespace();
// Individuals in the default namespace
// e.g., http://vivo.cornell.edu/individual/n2345/n2345.rdf
// where default namespace = http://vivo.cornell.edu/individual/
// Other individuals: http://some.other.namespace/n2345?format=rdfxml
String defaultNamespace = vreq.getWebappDaoFactory().getDefaultNamespace();
return (defaultNamespace.equals(namespace)) ? true : false;
}
public String getCoInvestigatorVisUrl() {
String coinvestigatorVisURL = getBaseVisUrl() + "/" + VisualizationFrameworkConstants.COINVESTIGATOR_VIS_SHORT_URL + "/";
@ -77,7 +60,9 @@ public class IndividualTemplateModel extends BaseIndividualTemplateModel {
}
private String getVisUrl(String coinvestigatorVisURL) {
boolean isUsingDefaultNameSpace = isIndividualURIBasedOnDefaultNamespace();
boolean isUsingDefaultNameSpace = UrlBuilder.isUriInDefaultNamespace(
getUri(),
vreq);
if (isUsingDefaultNameSpace) {