From 6d77fc78711ae234005e85d1610cf50522c13dbe Mon Sep 17 00:00:00 2001 From: brianjlowe Date: Thu, 19 Sep 2013 14:18:49 -0400 Subject: [PATCH] various and sundry data migration changes --- .../WEB-INF/ontologies/update/diff.tab.txt | 2 +- .../additions/Editorship.sparql | 17 +++++++++++++++++ .../additions/{ => post}/Grant.sparql | 1 + .../additions/{ => post}/awardedDegree.sparql | 0 .../sparqlConstructs/additions/vcard2.sparql | 9 +++++++++ .../deletions/EditorshipDel.sparql | 14 ++++++++++++++ .../{ => post}/awardedDegreeDel.sparql | 4 +++- .../sparqlConstructs/deletions/vcardDel.sparql | 9 +++++++++ rdf/display/everytime/.PropertyConfig.n3.swp | Bin 0 -> 16384 bytes rdf/tbox/filegraph/contact-vcard.owl | 11 +++++++++++ rdf/tbox/filegraph/contact.owl | 12 ------------ rdf/tbox/filegraph/publication.owl | 10 ---------- 12 files changed, 65 insertions(+), 24 deletions(-) create mode 100644 productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/Editorship.sparql rename productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/{ => post}/Grant.sparql (85%) rename productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/{ => post}/awardedDegree.sparql (100%) create mode 100644 productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/EditorshipDel.sparql rename productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/{ => post}/awardedDegreeDel.sparql (76%) create mode 100644 rdf/display/everytime/.PropertyConfig.n3.swp diff --git a/productMods/WEB-INF/ontologies/update/diff.tab.txt b/productMods/WEB-INF/ontologies/update/diff.tab.txt index 23aee090..b88f01d0 100644 --- a/productMods/WEB-INF/ontologies/update/diff.tab.txt +++ b/productMods/WEB-INF/ontologies/update/diff.tab.txt @@ -1 +1 @@ -http://vivoweb.org/ontology/core#administeredBy complex construct with grant administrator role http://vivoweb.org/ontology/core#administers complex construct with grant administrator role http://vivoweb.org/ontology/core#advisee CC - advising relationship plus add advisee role http://vivoweb.org/ontology/core#adviseeIn CC - advising relationship plus add advisee role http://vivoweb.org/ontology/core#advisingContributionTo realizedIn? Come back to this. http://vivoweb.org/ontology/core#advisor CC - advising relationship plus add advisor role http://vivoweb.org/ontology/core#advisorIn CC - advising relationship plus add advisor role http://vivoweb.org/ontology/core#affiliatedOrganization construct Relationship node? http://vivoweb.org/ontology/core#assignedBy patent - come back to this http://vivoweb.org/ontology/core#assignee patent - come back to this http://vivoweb.org/ontology/core#associatedRole http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#associatedWithPosition http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#attendeeRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#authorInAuthorship http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#awardConferred http://vivoweb.org/ontology/core#assigns Yes z http://vivoweb.org/ontology/core#awardConferredBy http://vivoweb.org/ontology/core#assignedBy Yes z http://vivoweb.org/ontology/core#awardOrHonor http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#awardOrHonorFor http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#awardsGrant http://vivoweb.org/ontology/core#assigns Yes z http://vivoweb.org/ontology/core#clinicalRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#co-PrincipalInvestigatorRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#contributingAdvising come back to this http://vivoweb.org/ontology/core#contributingRole come back to this http://vivoweb.org/ontology/core#courseOfferedBy http://vivoweb.org/ontology/core#offeredBy Yes z http://vivoweb.org/ontology/core#credentialOf http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#currentMemberOf http://vivoweb.org/ontology/core#memberOf Yes z http://vivoweb.org/ontology/core#currentlyHeadOf CC or delete? http://vivoweb.org/ontology/core#currentlyHeadedBy CC or delete? http://vivoweb.org/ontology/core#degreeCandidacy revisit http://vivoweb.org/ontology/core#degreeEarned http://purl.obolibrary.org/obo/RO_0002234 Yes z http://vivoweb.org/ontology/core#degreeOfferedBy http://vivoweb.org/ontology/core#offeredBy Yes z http://vivoweb.org/ontology/core#degreeOutcomeOf http://purl.obolibrary.org/obo/RO_0002353 Yes z http://vivoweb.org/ontology/core#distributes revisit (distributor role?) http://vivoweb.org/ontology/core#distributesFundingFrom revisit http://vivoweb.org/ontology/core#domesticGeographicFocus http://vivoweb.org/ontology/core#geographicFocus Yes z http://vivoweb.org/ontology/core#domesticGeographicFocusOf http://vivoweb.org/ontology/core#geographicFocusOf Yes z http://vivoweb.org/ontology/core#editor CC editorship http://vivoweb.org/ontology/core#editorOf CC editorship http://vivoweb.org/ontology/core#editorRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#educationalTraining http://purl.obolibrary.org/obo/RO_0000056 Yes z http://vivoweb.org/ontology/core#educationalTrainingOf http://purl.obolibrary.org/obo/RO_0000057 Yes z http://vivoweb.org/ontology/core#eligibleFor revisit http://vivoweb.org/ontology/core#equipmentInFacility http://purl.obolibrary.org/obo/RO_0001025 Yes """located in""" http://vivoweb.org/ontology/core#eventWithin http://purl.obolibrary.org/obo/BFO_0000050 Yes """part of""" http://vivoweb.org/ontology/core#geographicLocationOf http://purl.obolibrary.org/obo/RO_0001015 Yes """location of""" http://vivoweb.org/ontology/core#geographicallyContains http://purl.obolibrary.org/obo/BFO_0000051 Yes """has part""" http://vivoweb.org/ontology/core#geographicallyWithin http://purl.obolibrary.org/obo/BFO_0000050 Yes z http://vivoweb.org/ontology/core#governingAuthorityFor revisit http://vivoweb.org/ontology/core#grantAwardedBy http://vivoweb.org/ontology/core#assignedBy Yes z http://vivoweb.org/ontology/core#hasAttendeeRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasAttendeeRoleContext http://vivoweb.org/ontology/core#hasClinicalRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasClinicalRoleContext http://vivoweb.org/ontology/core#hasCo-PrincipalInvestigatorRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasCo-PrincipalInvestigatorRoleContext http://vivoweb.org/ontology/core#hasCollaborator http://vivoweb.org/ontology/core#relatedBy Yes CC construct Relationship http://vivoweb.org/ontology/core#hasCredential http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#hasCurrentMember revisit - construct relationship? http://vivoweb.org/ontology/core#hasEditorRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasEditorRoleContext http://vivoweb.org/ontology/core#hasGeographicLocation http://purl.obolibrary.org/obo/RO_0001025 Yes """located in""" http://vivoweb.org/ontology/core#hasGoverningAuthority revisit http://vivoweb.org/ontology/core#hasInvestigatorRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasInvestigatorRoleContext http://vivoweb.org/ontology/core#hasLeaderRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasLeaderRoleContext http://vivoweb.org/ontology/core#hasMemberRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasMemberRoleContext http://vivoweb.org/ontology/core#hasOrganizerRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasOrganizerRoleContext http://vivoweb.org/ontology/core#hasOutreachProviderRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasOutreachProviderContext http://vivoweb.org/ontology/core#hasPart http://purl.obolibrary.org/obo/BFO_0000051 Yes z http://vivoweb.org/ontology/core#hasPredecessorOrganization revisit http://vivoweb.org/ontology/core#hasPresenterRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasPresenterRoleContext http://vivoweb.org/ontology/core#hasPrincipalInvestigatorRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasPrincipalInvestigatorRoleContext http://vivoweb.org/ontology/core#hasResearcherRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasResearcherRoleContext http://vivoweb.org/ontology/core#hasReviewerRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasReviewerRoleContext http://vivoweb.org/ontology/core#hasRole http://purl.obolibrary.org/obo/RO_0000053 Yes z http://vivoweb.org/ontology/core#hasRoom http://purl.obolibrary.org/obo/BFO_0000051 Yes """has part""" http://vivoweb.org/ontology/core#hasServiceProviderRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasServiceProviderRoleContext http://vivoweb.org/ontology/core#hasSubOrganization http://purl.obolibrary.org/obo/BFO_0000051 Yes z http://vivoweb.org/ontology/core#hasSuccessorOrganization revisit http://vivoweb.org/ontology/core#hasTeacherRole http://purl.obolibrary.org/obo/RO_0000053 Yes z http://vivoweb.org/ontology/core#inEventSeries http://purl.obolibrary.org/obo/BFO_0000050 Yes """part of""" http://vivoweb.org/ontology/core#includesEvent http://purl.obolibrary.org/obo/BFO_0000051 Yes z http://vivoweb.org/ontology/core#informationProduct revisit http://vivoweb.org/ontology/core#informationProductOf revisit http://vivoweb.org/ontology/core#informationResourceInAuthorship http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#internationalGeographicFocus http://vivoweb.org/ontology/core#geographicFocus Yes z http://vivoweb.org/ontology/core#internationalGeographicFocusOf http://vivoweb.org/ontology/core#geographicFocusOf Yes z http://vivoweb.org/ontology/core#investigatorRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes """inheres in""" http://vivoweb.org/ontology/core#issuanceOfCredential http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#issuedCredential http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#leaderRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#linkedAuthor http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#linkedInformationResource http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#locationOfEquipment http://purl.obolibrary.org/obo/RO_0001015 Yes z http://vivoweb.org/ontology/core#mailingAddress VCard http://vivoweb.org/ontology/core#mailingAddressFor VCard http://vivoweb.org/ontology/core#memberRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#offersCourse http://vivoweb.org/ontology/core#offers Yes z http://vivoweb.org/ontology/core#offersDegree http://vivoweb.org/ontology/core#offers Yes z http://vivoweb.org/ontology/core#organizationForPosition http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#organizationForTraining http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#organizerRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#outcome revisit: RO? http://vivoweb.org/ontology/core#outcomeOf revisit: RO? http://vivoweb.org/ontology/core#outreachProviderRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#partOf http://purl.obolibrary.org/obo/BFO_0000050 Yes z http://vivoweb.org/ontology/core#personInPosition http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#positionForPerson http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#positionInOrganization http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#presenterRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#principalInvestigatorRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#providesService http://vivoweb.org/ontology/core#offers Yes z http://vivoweb.org/ontology/core#realizedRole http://purl.obolibrary.org/obo/BFO_0000055 Yes """realizes""" http://vivoweb.org/ontology/core#receipt http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#receiptOf http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#relatedRole http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#researcherRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#reviewerRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#roleContributesTo http://vivoweb.org/ontology/core#relatedBy Yes may not apply in all situations http://vivoweb.org/ontology/core#roleIn http://purl.obolibrary.org/obo/BFO_0000054 Yes """realized in"" (or delete, since there should be subs?)" http://vivoweb.org/ontology/core#roleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#roleRealizedIn http://purl.obolibrary.org/obo/BFO_0000054 Yes z http://vivoweb.org/ontology/core#roomWithinBuilding http://purl.obolibrary.org/obo/RO_0001025 Yes double check this http://vivoweb.org/ontology/core#seriesForEvent http://purl.obolibrary.org/obo/BFO_0000051 Yes z http://vivoweb.org/ontology/core#serviceProvidedBy http://vivoweb.org/ontology/core#offeredBy Yes z http://vivoweb.org/ontology/core#serviceProviderRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#subGrantOf http://purl.obolibrary.org/obo/BFO_0000050 Yes z http://vivoweb.org/ontology/core#subOrganizationWithin http://purl.obolibrary.org/obo/BFO_0000050 Yes z http://vivoweb.org/ontology/core#teacherRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#trainingAtOrganization http://vivoweb.org/ontology/core#relates Yes double check this http://vivoweb.org/ontology/core#EducationalTraining http://vivoweb.org/ontology/core#EducationalProcess Yes z \ No newline at end of file +http://vivoweb.org/ontology/core#administeredBy complex construct with grant administrator role http://vivoweb.org/ontology/core#administers complex construct with grant administrator role http://vivoweb.org/ontology/core#advisee CC - advising relationship plus add advisee role http://vivoweb.org/ontology/core#adviseeIn CC - advising relationship plus add advisee role http://vivoweb.org/ontology/core#advisingContributionTo realizedIn? Come back to this. http://vivoweb.org/ontology/core#advisor CC - advising relationship plus add advisor role http://vivoweb.org/ontology/core#advisorIn CC - advising relationship plus add advisor role http://vivoweb.org/ontology/core#affiliatedOrganization construct Relationship node? http://vivoweb.org/ontology/core#assignedBy patent - come back to this http://vivoweb.org/ontology/core#assignee patent - come back to this http://vivoweb.org/ontology/core#associatedRole http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#associatedWithPosition http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#attendeeRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#authorInAuthorship http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#awardConferred http://vivoweb.org/ontology/core#assigns Yes z http://vivoweb.org/ontology/core#awardConferredBy http://vivoweb.org/ontology/core#assignedBy Yes z http://vivoweb.org/ontology/core#awardOrHonor http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#awardOrHonorFor http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#awardsGrant http://vivoweb.org/ontology/core#assigns Yes z http://vivoweb.org/ontology/core#clinicalRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#co-PrincipalInvestigatorRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#contributingAdvising come back to this http://vivoweb.org/ontology/core#contributingRole come back to this http://vivoweb.org/ontology/core#courseOfferedBy http://vivoweb.org/ontology/core#offeredBy Yes z http://vivoweb.org/ontology/core#credentialOf http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#currentMemberOf http://vivoweb.org/ontology/core#memberOf Yes z http://vivoweb.org/ontology/core#currentlyHeadOf CC or delete? http://vivoweb.org/ontology/core#currentlyHeadedBy CC or delete? http://vivoweb.org/ontology/core#degreeCandidacy revisit http://vivoweb.org/ontology/core#degreeEarned http://purl.obolibrary.org/obo/RO_0002234 Yes z http://vivoweb.org/ontology/core#degreeOfferedBy http://vivoweb.org/ontology/core#offeredBy Yes z http://vivoweb.org/ontology/core#degreeOutcomeOf http://purl.obolibrary.org/obo/RO_0002353 Yes z http://vivoweb.org/ontology/core#distributes revisit (distributor role?) http://vivoweb.org/ontology/core#distributesFundingFrom revisit http://vivoweb.org/ontology/core#domesticGeographicFocus http://vivoweb.org/ontology/core#geographicFocus Yes z http://vivoweb.org/ontology/core#domesticGeographicFocusOf http://vivoweb.org/ontology/core#geographicFocusOf Yes z http://vivoweb.org/ontology/core#editor CC editorship http://vivoweb.org/ontology/core#editorOf CC editorship http://vivoweb.org/ontology/core#editorRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#educationalTraining http://purl.obolibrary.org/obo/RO_0000056 Yes z http://vivoweb.org/ontology/core#educationalTrainingOf http://purl.obolibrary.org/obo/RO_0000057 Yes z http://vivoweb.org/ontology/core#eligibleFor revisit http://vivoweb.org/ontology/core#equipmentInFacility http://purl.obolibrary.org/obo/RO_0001025 Yes """located in""" http://vivoweb.org/ontology/core#eventWithin http://purl.obolibrary.org/obo/BFO_0000050 Yes """part of""" http://vivoweb.org/ontology/core#geographicLocationOf http://purl.obolibrary.org/obo/RO_0001015 Yes """location of""" http://vivoweb.org/ontology/core#geographicallyContains http://purl.obolibrary.org/obo/BFO_0000051 Yes """has part""" http://vivoweb.org/ontology/core#geographicallyWithin http://purl.obolibrary.org/obo/BFO_0000050 Yes z http://vivoweb.org/ontology/core#governingAuthorityFor revisit http://vivoweb.org/ontology/core#grantAwardedBy http://vivoweb.org/ontology/core#assignedBy Yes z http://vivoweb.org/ontology/core#hasAttendeeRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasAttendeeRoleContext http://vivoweb.org/ontology/core#hasClinicalRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasClinicalRoleContext http://vivoweb.org/ontology/core#hasCo-PrincipalInvestigatorRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasCo-PrincipalInvestigatorRoleContext http://vivoweb.org/ontology/core#hasCollaborator http://vivoweb.org/ontology/core#relatedBy Yes CC construct Relationship http://vivoweb.org/ontology/core#hasCredential http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#hasCurrentMember revisit - construct relationship? http://vivoweb.org/ontology/core#hasEditorRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasEditorRoleContext http://vivoweb.org/ontology/core#hasGeographicLocation http://purl.obolibrary.org/obo/RO_0001025 Yes """located in""" http://vivoweb.org/ontology/core#hasGoverningAuthority revisit http://vivoweb.org/ontology/core#hasInvestigatorRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasInvestigatorRoleContext http://vivoweb.org/ontology/core#hasLeaderRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasLeaderRoleContext http://vivoweb.org/ontology/core#hasMemberRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasMemberRoleContext http://vivoweb.org/ontology/core#hasOrganizerRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasOrganizerRoleContext http://vivoweb.org/ontology/core#hasOutreachProviderRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasOutreachProviderContext http://vivoweb.org/ontology/core#hasPart http://purl.obolibrary.org/obo/BFO_0000051 Yes z http://vivoweb.org/ontology/core#hasPredecessorOrganization revisit http://vivoweb.org/ontology/core#hasPresenterRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasPresenterRoleContext http://vivoweb.org/ontology/core#hasPrincipalInvestigatorRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasPrincipalInvestigatorRoleContext http://vivoweb.org/ontology/core#hasResearcherRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasResearcherRoleContext http://vivoweb.org/ontology/core#hasReviewerRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasReviewerRoleContext http://vivoweb.org/ontology/core#hasRole http://purl.obolibrary.org/obo/RO_0000053 Yes z http://vivoweb.org/ontology/core#hasRoom http://purl.obolibrary.org/obo/BFO_0000051 Yes """has part""" http://vivoweb.org/ontology/core#hasServiceProviderRole http://purl.obolibrary.org/obo/RO_0000053 Yes cc:hasServiceProviderRoleContext http://vivoweb.org/ontology/core#hasSubOrganization http://purl.obolibrary.org/obo/BFO_0000051 Yes z http://vivoweb.org/ontology/core#hasSuccessorOrganization revisit http://vivoweb.org/ontology/core#hasTeacherRole http://purl.obolibrary.org/obo/RO_0000053 Yes z http://vivoweb.org/ontology/core#inEventSeries http://purl.obolibrary.org/obo/BFO_0000050 Yes """part of""" http://vivoweb.org/ontology/core#includesEvent http://purl.obolibrary.org/obo/BFO_0000051 Yes z http://vivoweb.org/ontology/core#informationProduct revisit http://vivoweb.org/ontology/core#informationProductOf revisit http://vivoweb.org/ontology/core#informationResourceInAuthorship http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#internationalGeographicFocus http://vivoweb.org/ontology/core#geographicFocus Yes z http://vivoweb.org/ontology/core#internationalGeographicFocusOf http://vivoweb.org/ontology/core#geographicFocusOf Yes z http://vivoweb.org/ontology/core#investigatorRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes """inheres in""" http://vivoweb.org/ontology/core#issuanceOfCredential http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#issuedCredential http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#leaderRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#linkedAuthor http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#linkedInformationResource http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#locationOfEquipment http://purl.obolibrary.org/obo/RO_0001015 Yes z http://vivoweb.org/ontology/core#mailingAddress VCard http://vivoweb.org/ontology/core#mailingAddressFor VCard http://vivoweb.org/ontology/core#memberRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#offersCourse http://vivoweb.org/ontology/core#offers Yes z http://vivoweb.org/ontology/core#offersDegree http://vivoweb.org/ontology/core#offers Yes z http://vivoweb.org/ontology/core#organizationForPosition http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#organizationForTraining http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#organizerRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#outcome revisit: RO? http://vivoweb.org/ontology/core#outcomeOf revisit: RO? http://vivoweb.org/ontology/core#outreachProviderRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#partOf http://purl.obolibrary.org/obo/BFO_0000050 Yes z http://vivoweb.org/ontology/core#personInPosition http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#positionForPerson http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#positionInOrganization http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#presenterRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#principalInvestigatorRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#providesService http://vivoweb.org/ontology/core#offers Yes z http://vivoweb.org/ontology/core#realizedRole http://purl.obolibrary.org/obo/BFO_0000055 Yes """realizes""" http://vivoweb.org/ontology/core#receipt http://vivoweb.org/ontology/core#relatedBy Yes z http://vivoweb.org/ontology/core#receiptOf http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#relatedRole http://vivoweb.org/ontology/core#relates Yes z http://vivoweb.org/ontology/core#researcherRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#reviewerRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#roleContributesTo http://vivoweb.org/ontology/core#relatedBy Yes may not apply in all situations http://vivoweb.org/ontology/core#roleIn http://purl.obolibrary.org/obo/BFO_0000054 Yes """realized in"" (or delete, since there should be subs?)" http://vivoweb.org/ontology/core#roleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#roleRealizedIn http://purl.obolibrary.org/obo/BFO_0000054 Yes z http://vivoweb.org/ontology/core#roomWithinBuilding http://purl.obolibrary.org/obo/RO_0001025 Yes double check this http://vivoweb.org/ontology/core#seriesForEvent http://purl.obolibrary.org/obo/BFO_0000051 Yes z http://vivoweb.org/ontology/core#serviceProvidedBy http://vivoweb.org/ontology/core#offeredBy Yes z http://vivoweb.org/ontology/core#serviceProviderRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#subGrantOf http://purl.obolibrary.org/obo/BFO_0000050 Yes z http://vivoweb.org/ontology/core#subOrganizationWithin http://purl.obolibrary.org/obo/BFO_0000050 Yes z http://vivoweb.org/ontology/core#teacherRoleOf http://purl.obolibrary.org/obo/RO_0000052 Yes z http://vivoweb.org/ontology/core#trainingAtOrganization http://vivoweb.org/ontology/core#relates Yes double check this http://vivoweb.org/ontology/core#EducationalTraining http://vivoweb.org/ontology/core#EducationalProcess Yes z http://vivoweb.org/ontology/core#URLLink http://www.w3.org/2006/vcard/ns#URL Yes \ No newline at end of file diff --git a/productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/Editorship.sparql b/productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/Editorship.sparql new file mode 100644 index 00000000..0720c346 --- /dev/null +++ b/productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/Editorship.sparql @@ -0,0 +1,17 @@ +PREFIX vivo: +PREFIX owl: +PREFIX foaf: + +CONSTRUCT { + ?person vivo:relatedBy _:Editorship . + _:Editorship a vivo:Editorship . + _:Editorship vivo:relates ?person . + _:Editorship vivo:relates ?document . + ?document vivo:relatedBy _:Editorship . +} WHERE { + { + ?person vivo:editorOf ?document + } UNION { + ?document vivo:editor ?person + } +} diff --git a/productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/Grant.sparql b/productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/post/Grant.sparql similarity index 85% rename from productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/Grant.sparql rename to productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/post/Grant.sparql index 8b34b1b5..f0a2a4a8 100644 --- a/productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/Grant.sparql +++ b/productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/post/Grant.sparql @@ -8,4 +8,5 @@ CONSTRUCT { } WHERE { ?agent ?role . ?role vivo:relatedBy ?grant + FILTER NOT EXISTS { ?grant vivo:relates ?agent } } diff --git a/productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/awardedDegree.sparql b/productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/post/awardedDegree.sparql similarity index 100% rename from productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/awardedDegree.sparql rename to productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/post/awardedDegree.sparql diff --git a/productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/vcard2.sparql b/productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/vcard2.sparql index ae21fbab..499d0bbb 100644 --- a/productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/vcard2.sparql +++ b/productMods/WEB-INF/ontologies/update/sparqlConstructs/additions/vcard2.sparql @@ -2,6 +2,7 @@ PREFIX arg: PREFIX foaf: PREFIX v: PREFIX vivo: +PREFIX bibo: CONSTRUCT { ?vcard v:hasName _:name . @@ -9,6 +10,8 @@ CONSTRUCT { _:name v:givenName ?firstName . _:name vivo:middleName ?middleName . _:name v:familyName ?lastName . + _:name v:honorificPrefix ?prefix . + _:name v:honorificSuffix ?suffix . } WHERE { ?s arg:ARG_2000028 ?vcard . OPTIONAL { @@ -23,5 +26,11 @@ CONSTRUCT { ?s vivo:middleName ?middleName BIND("yes" as ?test) } + OPTIONAL { + ?s bibo:prefixName ?prefix + } + OPTIONAL { + ?s bibo:suffixName ?suffix + } FILTER(bound(?test)) } diff --git a/productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/EditorshipDel.sparql b/productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/EditorshipDel.sparql new file mode 100644 index 00000000..dd934496 --- /dev/null +++ b/productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/EditorshipDel.sparql @@ -0,0 +1,14 @@ +PREFIX vivo: +PREFIX owl: +PREFIX foaf: + +CONSTRUCT { + ?person vivo:editorOf ?document . + ?document vivo:editor ?person +} WHERE { + { + ?person vivo:editorOf ?document + } UNION { + ?document vivo:editor ?person + } +} diff --git a/productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/awardedDegreeDel.sparql b/productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/post/awardedDegreeDel.sparql similarity index 76% rename from productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/awardedDegreeDel.sparql rename to productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/post/awardedDegreeDel.sparql index faafb687..6d169b25 100644 --- a/productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/awardedDegreeDel.sparql +++ b/productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/post/awardedDegreeDel.sparql @@ -8,11 +8,13 @@ CONSTRUCT { ?educationalProcess vivo:relates ?org . ?org vivo:relatedBy ?educationalProcess . } WHERE { + ?educationalProcess ?degree . + ?person ?educationalProcess . + ?educationalProcess a vivo:EducationalProcess . ?educationalProcess ?degree . OPTIONAL { ?degree ?educationalProcess } OPTIONAL { ?educationalProcess vivo:relates ?org . ?org a foaf:Organization . } - ?degree a vivo:AcademicDegree . } diff --git a/productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/vcardDel.sparql b/productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/vcardDel.sparql index 7df305a2..439b7599 100644 --- a/productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/vcardDel.sparql +++ b/productMods/WEB-INF/ontologies/update/sparqlConstructs/deletions/vcardDel.sparql @@ -2,11 +2,14 @@ PREFIX arg: PREFIX foaf: PREFIX v: PREFIX vivo: +PREFIX bibo: CONSTRUCT { ?s foaf:firstName ?firstName . ?s foaf:lastName ?lastName . ?s vivo:middleName ?middleName . + ?s bibo:prefixName ?prefix . + ?s bibo:suffixName ?suffix . ?s vivo:email ?email . ?s vivo:primaryEmail ?primaryEmail . ?s vivo:phoneNumber ?phoneNumber . @@ -25,6 +28,12 @@ CONSTRUCT { } UNION { ?s vivo:middleName ?middleName + } + UNION { + ?s bibo:prefixName ?prefix + } + UNION { + ?s bibo:suffixName ?suffix } UNION { ?s vivo:email ?email diff --git a/rdf/display/everytime/.PropertyConfig.n3.swp b/rdf/display/everytime/.PropertyConfig.n3.swp new file mode 100644 index 0000000000000000000000000000000000000000..17d5e92c1175828959d726802aaeee5ac1529a00 GIT binary patch literal 16384 zcmeHOON1+qMXF+pmkYi1gIy4vcVnH^0a z@j!@2^?*cf8Zq%=yqFk`i3u?gOgs>c9yGy&Ui2V(67Z|8>e-puX?9o;2&qoK^iI9& ztN*Y1|G#UCxqaIv$O?PR!t;=2o%t?5*;;dI=-eX9DjxDjlXRJPg~#`bBS~2se+epD zc8QCC`M%BEdPlv(Ng*c^C8tt#8eW4t!YwGHFkl!k3>XFs1BQXy zlz}*0XdS`a?$GnwqTlm+-k0^WR;O?6$-kuY*Xi`5J^2@V>Ywh(|5xWfr_&ec0i@%Y zuhW<6_lBN)oorr)0mFb{z%XDKFbo(53GHFkl!k4D?}ux|a1A(sxLI8sGm@ z|NrcRmUR+%9=P~`Wqk=816Bh6;BLSt!0W&SupPL3zhzwlE&?9{r+_A~9(WS?`990~ z0{9#_0vrS$0lvD|vfcwKz}b6n{{VO!*bn4^Kkv4zZ-KMGF~A3&0KUEp{Qy32W}#($ z0~`k^PyjC7X<0u3KLRI!?Z6UXK5%-0WgP|nKv3ZX@D5M}mICJy2zehk2)qb94x9rw z9{_IvlBWrv|3e6Ac(LGxs^_{a*erN$qq^O&p832v$$hpR*Bt!uAmA|(_*n?+Mc*rt z)mFQ%z7H`;gO^pge3Dtv={snRk)eo*hF4-F<|M8%5(-{sQRMMpNHtaPy(r%2v8K91 zvDx!csXJ|?N+UTUd#dIS9XK!*xrHbeUQj^`J}*(ffC9T!Ke&<6@LVQjdDSAJq_DGi zh?U~>wuYXm&Q8Wm}HPtu{3yu@kg>UmBPw$OzQE~9o*)+NH zrJQ{7qicz6$ts?%q$5~9)@}oIsL9m@jX^aTfTdZfl;e?Hs+RQtF={nwtZQ-;W{cqUusvpZb*9OR zc0yMWbDvjQ!-?RfYmt;MdJrvM5j3oNCGeu)2DTqZ2Y}AyX4dK2{`|eJS z1_9Q^PRiTpj)oyF^msAu+VVfJ0WThSF5olEzm1& za)H&jFyX3K^kU{p<=Gp$G-dRkybl0h~Ck9T;*b0 zFrK`lsuyOf;LNg0P-a&@B|x33C&i{P-D$RBrRq5cwMzOB%*V1xZCAU1+(^{0yEP|s za;etzEpSDRxgpZMQ&ec+y_&52RvPW%5!8VPTe0PG(aMl=wT-Fq&Fy%|l+xvz=4;w5 zXu0h9UNWclj@Nx)^gTqd2erAtPLgubPokxkcdJs!c<3{!J8CP7$)?~|P=+ry+uMF69tKwKUyjY&OXr0By)CINR@v^uea^$AXDNb*sT zMY3qAE(8l=zeS>Y7;+KIvNanv{JJ7VGwFG!Or6y5>A1w~1QG5l!?1V8!w}|rvP-H} z(kGfUQ>}HOU}bL#`!o*Pj#g({YYrM`!--9nR#KwSuEnNk4SQo^ z_Wa11uGl>(w;WAV*K9WJ=2*hPD7*nDmzOujN1_szk9Lg%$$hKkSFKv*1RwKsFKB@};@$G0Z^UThH71uGR)=W>$IXYLPen=|;Ob8Fg|i9OQSE zm#$oUQM=3Mo&6KrcTe*t{eS5vzXhLJ`u|I{WBZx*{}1Cm4$K2K!1w8lBbDIZ`4 zZ~c5JWg+XnG{19qm84{37)j4MjS>|uto~u$O)5%#qtG4g%pqcyN`-V9dV{*kO=ySH zQo+cIr}d>Kb+%??X1Q9!!^0$*zx=9z<%wbJ5+q)akTl2tcsB4=BIWajs3z7>M?LrO zZ9y5~?!1?*b=+#DGJ(aWB^j3X{ zl3$ @@ -2086,6 +2087,16 @@ Was called IMPP in vCard. + + + + f1000 link + + F1000 is a place where faculty go to critique papers published in PubMed. Any given record in F1000 might have anywhere from one to dozens of reviews. + + + + diff --git a/rdf/tbox/filegraph/contact.owl b/rdf/tbox/filegraph/contact.owl index d4b9e122..1670a0b9 100644 --- a/rdf/tbox/filegraph/contact.owl +++ b/rdf/tbox/filegraph/contact.owl @@ -78,18 +78,6 @@ - - - - urllink - - The full URL. - Uniform Resource Locator (URL) specifies where an identified resource is available and the mechanism for retrieving it. - http://info.slis.indiana.edu/~katy/ - - - - diff --git a/rdf/tbox/filegraph/publication.owl b/rdf/tbox/filegraph/publication.owl index 776e541f..e73e84a3 100644 --- a/rdf/tbox/filegraph/publication.owl +++ b/rdf/tbox/filegraph/publication.owl @@ -1017,16 +1017,6 @@ This class allows for linking an author to a publication while indicating inform - - - - f1000 link - - F1000, is a place where faculty go to critique papers published in PubMed. Any given record in F1000 might have anywhere from one to dozens of reviews. - - - -