litvinovg/vivo
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity Actions

Remove release notes, and update all references from 1.3 (or earlier) to 1.4

Browse source
This commit is contained in:
j2blake 2011-12-09 15:50:53 +00:00
parent ab065973c3
commit 710407376a
1 changed files with 9 additions and 126 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

135
doc/install.html
View file

@ -3,7 +3,7 @@
<head> <head>
<meta http-equiv="content-type" content="text/html; charset=UTF-8"> <meta http-equiv="content-type" content="text/html; charset=UTF-8">
<meta charset="utf-8"> <meta charset="utf-8">
<title>VIVO Release 1 V1.3 Installation Guide</title> <title>VIVO Release 1 V1.4 Installation Guide</title>
<link rel="stylesheet" href="./css/doc.css" media="screen"> <link rel="stylesheet" href="./css/doc.css" media="screen">
</head> </head>
<body> <body>
@ -12,129 +12,12 @@
</div> </div>
<!-- Start of content --> <!-- Start of content -->
<div id="wrapper-content" role="main"> <div id="wrapper-content" role="main">
<h1>VIVO Release 1 V1.3 Installation Guide</h1> <h1>VIVO Release 1 V4 Installation Guide</h1>
<small> <small>
July 29, 2011 December 9, 2011
</small> </small>
<toc>
<ul>
<li>
<a href="#announcement">Release announcement for V1.3</a>
</li>
<li>
<a href="#installation">Installation process for V1.3</a>
</li>
</ul>
</toc>
<!-- Release Announcement --><h2 id="announcement">Release anouncement for V1.3</h2>
<!-- Release Announcement -->VIVO Release 1.3 incorporates changes to the search
indexing, user accounts, menu management, ontology, and visualizations, and begins
integration of VIVO Harvester functions with VIVO's own ingest tools.
<br> <br>
<h4>Search</h4> <hr><!-- Page break --><!-- Installation process for V1.4 --><h2 id="installation">Installation process for V1.4</h2>
<p>
VIVO 1.3 will feature notable improvements to the local search, primarily to
improve relevance ranking but also to boost the influence of semantic relationships
in the search. This will improve recall by including text from related resources
(e.g., adding a person's grant and publication titles to his or her search entry)
and by boosting overall relevance ranking based on the number and nature of
connections from one individual to others.
</p>
<p>
VIVO is now using Apache Solr (http://lucene.apache.org/solr/) in place of
Apache Lucene to improve indexing and faceting of search results. The migration
to Solr also aligns the local search with the VIVO multi-site search site under
development for release prior to the 2011 VIVO Conference.
</p>
<h4>Authorization</h4>
<p>
Release 1.3 provides an entirely new model of authorization within the
VIVO application to allow more granular control over system
configuration and editing. The first phase of the new user account
interface is included in V1.3. This interface provides a user search, a
root acount, and password reset functionality where the password gets
emailed to the user. The next phase will provide the ability to create
new roles.
</p>
<h4>Menu management</h4>
<p>
The menus across the top of the site (Home, People, Organizations,
Research, Events) can now be managed in a web form instead of editing
an RDF file. In addition to making site management much easier,
form-based editing also allows more control over what classes of data
are displayed and provides a mechanism to limit certain menu pages to
content identified as internal to the institution.
</p>
<h4>FreeMaker template improvements</h4>
<p>
While less directly visible to the public, version 1.3 also includes
additional changes focused directly on supporting open source community
involvement in extending and customizing VIVO. The development team
began a year ago to transition VIVO&#39;s code base away from Java Server
Pages to the FreeMarker page templating system that much more cleanly
separates internal application programming logic from page display.
</p>
<h4>Visualization</h4>
<p>
The visualization team has implemented a Map of Science visualization,
which allows users to visually explore the scientific strengths of a
university, school, department, or person in the VIVO instance. Users
will be able to see where an organization or person&#39;s interests lay
across 13 major scientific disciplines or 554 sub-disciplines, and will
be able to see how these disciplines and sub-disciplines interrelate
with one another on the map of science. Wireframes and design
documentation for upcoming enhanced versions of the Map of Science
visualization have already been developed; the Map of Science
visualization will most likely be in the form of a PDF that a user can
download.
</p>
<p>
Several visualization also now provide a caching feature that improves
performance after the initial processing.
</p>
<h4>QR Codes</h4>
<p>
Pages for people in VIVO now have an icon for displaying QR codes to allow
capturing names and available contact information on mobile devices.
</p>
<h4>Harvester Integration</h4>
<p>
VIVO sites have the option with Release 1.3 of coordinating the configuration
of VIVO and the Harvester to enable many Harvester functions to be initiated
from the VIVO Ingest Tools menu in support of more unified and centralized
management for data ingest.
</p>
<h4>Ontology changes</h4>
<ul>
<li>
support for certifications and licenses
</li>
<li>
expanded support for intellectual property (patents) (it was
there as stub before but didn't allow common things such as assignee
and issuer)
</li>
<li>
support for editorial, reviewing and organizing activities
</li>
<li>
expanded shared geographical instance data vocabulary to include
the 50 U.S. states
</li>
<li>
representing specific types of EducationalTraining:
PostdoctoralTraining, Internship, MedicalResidency
</li>
</ul>
<h4>Linked open data</h4>
<p>
Responses to linked data requests have been enhanced to include
additional context about any individual, in working toward a goal of
being able to provide all the data in a person's profile available as
RDF via a single web request.
</p>
<br>
<hr><!-- Page break --><!-- Installation process for V1.2 --><h2 id="installation">Installation process for V1.3</h2>
<p> <p>
This document is a summary of the VIVO installation process. This This document is a summary of the VIVO installation process. This
and other documentation can be found on the <a href="http://vivoweb.org/support">support page</a> and other documentation can be found on the <a href="http://vivoweb.org/support">support page</a>
@ -274,8 +157,8 @@
support websites. support websites.
</p> </p>
<p> <p>
* Note that VIVO V1.2 or V1.3 will not run on older versions of MySQL that * Note that VIVO V1.4 will not run on older versions of MySQL that
may have worked with 1.1.1. Be sure to run VIVO 1.2 with MySQL 5.1 or may have worked with 1.1.1. Be sure to run VIVO 1.4 with MySQL 5.1 or
higher. Using unsupported versions may result in strange error messages higher. Using unsupported versions may result in strange error messages
related to table formatting or other unexpected problems. related to table formatting or other unexpected problems.
</p> </p>
@ -308,8 +191,8 @@
<br> <br>
</h3> </h3>
<p> <p>
Download the VIVO application source as either <code>rel-1.3.zip</code> Download the VIVO application source as either <code>rel-4.zip</code>
or <code>rel-1.3.gz</code> or <code>rel-1.4.gz</code>
file and unpack it on your web server: file and unpack it on your web server:
<br> <br>
<a href="http://vivoweb.org/download">http://vivoweb.org/download</a> <a href="http://vivoweb.org/download">http://vivoweb.org/download</a>
@ -701,7 +584,7 @@
The number of grants and publications is large. The number of grants and publications is large.
</li> </li>
</ul> </ul>
VIVO V1.3 mitigates this problem by the way of a caching VIVO V1.4 mitigates this problem by the way of a caching
mechanism and hence we can safely set this to be enabled by default. mechanism and hence we can safely set this to be enabled by default.
</td> </td>
</tr> </tr>